Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000008

Orthogroup ID

OG0002059

Physical Location & Seq

Genomic Coordinates Reverse (-)

86154 .. 87659

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RorugPtG0003900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTAGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACTATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGAGATATAGTAATATGGAGAAGACAAAATTGTTTCAAGCACCTACAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTGAACCAGAAAAGTTTGGGTAAAGCCGGAGCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0009504 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

334

Amino Acids

36.44

Weight (kDa)

10.34

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	28 - 116	4.8e-34	Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C	PF03947	192 - 309	2.4e-49	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05570 AT1G05570 AT1G05570 AT1G05570 AT2G31960 AT2G31960 AT2G31960 AT2G31960 AT2G31960 AT3G32050 AT5G36870 AT5G36870 AT5G36870 AT5G36870 AT5G36870
fragaria_vesca	FvH4_7g00110 FvH4_7g00110
malus_domestica	MD02G1319100.v1.1 MD07G1001800.v1.1
prunus_persica	Prupe.2G003400_v2.0.a1 Prupe.2G003400_v2.0.a1 Prupe.2G003400_v2.0.a1 Prupe.2G003400_v2.0.a1
pyrus_communis	pycom02g26730 pycom07g00210
rosa_chinensis	RchiOBHm_Chr1g0313311 RchiOBHm_Chr1g0313331 RchiOBHm_Chr1g0313341
rosa_laevigata	RLG00000030802 RLG00000030803 RLG00000030805 RLG00000030806
rosa_multiflora	Rmu_co8187780.1_g000001 Rmu_sc0000035.1_g000021
rosa_roxburghii	Rroxscaffold_4G00332260
rosa_rugosa	RorugPtG0003800.1 RorugPtG0003900 RorugPtG0004000.1
rosa_samantha	Rh1AG002600 Rh1CG001700 Rh1CG007400 Rh1DG002500
rosa_wichuraiana	Rw1G000170 Rw1G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	638
AccI	GTMKAC	2 cut(s)	54, 858
AciI	CCGC	2 cut(s)	144, 912
AcoI	YGGCCR	2 cut(s)	591, 687
AfaI	GTAC	2 cut(s)	352, 523
AfiI	CCNNNNNNNGG	2 cut(s)	872, 938
AgsI	TTSAA	3 cut(s)	431, 459, 570
AjuI	GAANNNNNNNTTGG	2 cut(s)	600, 632
AluBI	AGCT	3 cut(s)	518, 638, 803
AluI	AGCT	3 cut(s)	518, 638, 803
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	591, 687, 888
ApaI	GGGCCC	1 cut(s)	892
ApeKI	GCWGC	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	3 cut(s)	715, 888, 889
AsuHPI	GGTGA	3 cut(s)	302, 784, 890
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	715
AxyI	CCTNAGG	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	892
BaeI	ACNNNNGTAYC	4 cut(s)	327, 342, 360, 375
BanII	GRGCYC	1 cut(s)	892
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	2 cut(s)	281, 870
BceAI	ACGGC	4 cut(s)	35, 484, 606, 978
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	639, 815
BfmI	CTRYAG	5 cut(s)	234, 438, 654, 828, 855
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	638
BisI	GCNGC	1 cut(s)	645
BlpI	GCTNAGC	1 cut(s)	739
BlsI	GCNGC	1 cut(s)	646
Bme18I	GGWCC	1 cut(s)	715
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	715, 888, 889
BmiI	GGNNCC	3 cut(s)	49, 890, 891
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	422
Bpu1102I	GCTNAGC	1 cut(s)	739
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	868, 920
Bsc4I	CCNNNNNNNGG	2 cut(s)	872, 938
Bse21I	CCTNAGG	1 cut(s)	583
Bse3DI	GCAATG	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	868, 920
BseGI	GGATG	4 cut(s)	292, 310, 488, 862
BseLI	CCNNNNNNNGG	2 cut(s)	872, 938
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	753
BseRI	GAGGAG	2 cut(s)	480, 852
BseSI	GKGCMC	1 cut(s)	892
BseXI	GCAGC	1 cut(s)	656
BsgI	GTGCAG	1 cut(s)	918
BshFI	GGCC	3 cut(s)	593, 689, 890
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	798
BslI	CCNNNNNNNGG	2 cut(s)	872, 938
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	593, 689, 890
BsoBI	CYCGRG	1 cut(s)	31
Bsp120I	GGGCCC	1 cut(s)	888
Bsp1286I	GDGCHC	2 cut(s)	38, 892
Bsp1407I	TGTACA	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	90, 547
Bsp1720I	GCTNAGC	1 cut(s)	739
Bsp19I	CCATGG	1 cut(s)	868
BspACI	CCGC	2 cut(s)	144, 912
BspANI	GGCC	3 cut(s)	593, 689, 890
BspCNI	CTCAG	1 cut(s)	752
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	49, 890, 891
BspMI	ACCTGC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	868, 920
BssMI	GATC	2 cut(s)	90, 547
BssT1I	CCWWGG	2 cut(s)	868, 920
Bst4CI	ACNGT	4 cut(s)	59, 182, 526, 748
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	583, 739
BstDSI	CCRYGG	1 cut(s)	868
BstF5I	GGATG	4 cut(s)	292, 310, 488, 862
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	2 cut(s)	93, 550
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	90, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	644, 650, 820
BstSFI	CTRYAG	5 cut(s)	234, 438, 654, 828, 855
BstSLI	GKGCMC	1 cut(s)	892
BstV1I	GCAGC	1 cut(s)	656
BstV2I	GAAGAC	1 cut(s)	422
BstXI	CCANNNNNNTGG	2 cut(s)	869, 875
Bsu15I	ATCGAT	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	583
BsuRI	GGCC	3 cut(s)	593, 689, 890
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	868
BtsCI	GGATG	4 cut(s)	292, 310, 488, 862
BveI	ACCTGC	1 cut(s)	638
CaiI	CAGNNNCTG	1 cut(s)	653
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	3 cut(s)	715, 888, 889
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	2 cut(s)	161, 812
Csp6I	GTAC	2 cut(s)	351, 522
CviAII	CATG	1 cut(s)	869
CviQI	GTAC	2 cut(s)	351, 522
DdeI	CTNAG	2 cut(s)	583, 739
DpnI	GATC	2 cut(s)	92, 549
DpnII	GATC	2 cut(s)	90, 547
EaeI	YGGCCR	2 cut(s)	591, 687
Eco130I	CCWWGG	2 cut(s)	868, 920
Eco24I	GRGCYC	1 cut(s)	892
Eco32I	GATATC	2 cut(s)	477, 726
Eco47I	GGWCC	1 cut(s)	715
Eco81I	CCTNAGG	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	888, 889
EcoRV	GATATC	2 cut(s)	477, 726
EcoT14I	CCWWGG	2 cut(s)	868, 920
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	892
ErhI	CCWWGG	2 cut(s)	868, 920
FaeI	CATG	1 cut(s)	872
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	1 cut(s)	868
FauI	CCCGC	1 cut(s)	919
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	2 cut(s)	54, 858
Fnu4HI	GCNGC	1 cut(s)	645
FokI	GGATG	4 cut(s)	297, 299, 475, 849
FriOI	GRGCYC	1 cut(s)	892
Fsp4HI	GCNGC	1 cut(s)	645
FspBI	CTAG	2 cut(s)	639, 815
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	1 cut(s)	645
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	593, 689, 890
HapII	CCGG	1 cut(s)	798
HgaI	GACGC	2 cut(s)	161, 812
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	1 cut(s)	872
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	4 cut(s)	135, 225, 560, 982
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	3 cut(s)	302, 784, 890
Hpy166II	GTNNAC	4 cut(s)	55, 629, 775, 859
Hpy188I	TCNGA	1 cut(s)	752
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	4 cut(s)	55, 629, 775, 859
Hpy99I	CGWCG	2 cut(s)	201, 993
HpyAV	CCTTC	3 cut(s)	527, 714, 875
HpyCH4III	ACNGT	4 cut(s)	59, 182, 526, 748
HpyCH4V	TGCA	3 cut(s)	260, 671, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	644, 650, 820
HpyF3I	CTNAG	2 cut(s)	583, 739
Hsp92II	CATG	1 cut(s)	872
HspAI	GCGC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	90, 547
LmnI	GCTCC	2 cut(s)	47, 800
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	639, 815
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	92, 549
MboI	GATC	2 cut(s)	90, 547
MboII	GAAGA	6 cut(s)	427, 524, 569, 954, 957, 977
MfeI	CAATTG	1 cut(s)	894
MhlI	GDGCHC	2 cut(s)	38, 892
MluCI	AATT	7 cut(s)	85, 327, 422, 632, 698, 894, 976
MmeI	TCCRAC	1 cut(s)	730
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	1 cut(s)	695
MslI	CAYNNNNRTG	2 cut(s)	867, 873
MspI	CCGG	1 cut(s)	798
MunI	CAATTG	1 cut(s)	894
MwoI	GCNNNNNNNGC	3 cut(s)	644, 650, 820
NcoI	CCATGG	1 cut(s)	868
NdeII	GATC	2 cut(s)	90, 547
NlaIII	CATG	1 cut(s)	872
NlaIV	GGNNCC	3 cut(s)	49, 890, 891
NsiI	ATGCAT	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	638
PfeI	GAWTC	4 cut(s)	135, 225, 560, 982
PkrI	GCNGC	1 cut(s)	646
PspN4I	GGNNCC	3 cut(s)	49, 890, 891
PspOMI	GGGCCC	1 cut(s)	888
PspPI	GGNCC	3 cut(s)	715, 888, 889
PstNI	CAGNNNCTG	1 cut(s)	653
RsaI	GTAC	2 cut(s)	352, 523
RsaNI	GTAC	2 cut(s)	351, 522
RseI	CAYNNNNRTG	2 cut(s)	867, 873
SaqAI	TTAA	1 cut(s)	695
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	2 cut(s)	90, 547
Sau96I	GGNCC	3 cut(s)	715, 888, 889
SduI	GDGCHC	2 cut(s)	38, 892
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	5 cut(s)	234, 438, 654, 828, 855
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	2 cut(s)	867, 873
Sse9I	AATT	7 cut(s)	85, 327, 422, 632, 698, 894, 976
SsiI	CCGC	2 cut(s)	144, 912
SspMI	CTAG	2 cut(s)	639, 815
StyI	CCWWGG	2 cut(s)	868, 920
TaaI	ACNGT	4 cut(s)	59, 182, 526, 748
TaqI	TCGA	3 cut(s)	189, 196, 253
TasI	AATT	7 cut(s)	85, 327, 422, 632, 698, 894, 976
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	4 cut(s)	135, 225, 560, 982
Tru1I	TTAA	1 cut(s)	695
Tru9I	TTAA	1 cut(s)	695
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	2 cut(s)	219, 863
TspGWI	ACGGA	3 cut(s)	214, 487, 707
VpaK11BI	GGWCC	1 cut(s)	715
XmiI	GTMKAC	2 cut(s)	54, 858
XspI	CTAG	2 cut(s)	639, 815
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.