Rh1AG002600

Callose synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002059
Physical Location & Seq
Forward (+)
427917 .. 431816
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG002600.1

Sequence Viewer

Length: 1179 bp
ATGGCATATAGAAGGGGCTTCGACCAGCAGCAACCGCAGAGGCGGATTCTGCGGACTCAGACTGCCGGAAGTTTTGGAGAGCCTATGTTGGATAGTGATGTTGTGCCTTCTTCTCTGGTTGATATTGCTCCTATTCTCCGTGTTGCAAATGAAGTCGAATCTAGGAATGCAAGAGTTGCCTATCTCTGTGAGTTGCATCTTCTAACATTATTCCACCTGTTTTCCATGTACATGACATCAACTGCTGTGTCTCACATTTGTGTTTATTTTCTATTTTATATGAAGGAACTCTATCAGGAAATTGGCATTCGTGCTACTGTTTCTGCACTCCGAAACACCAGAGGTTTACCCTGGTCGAAGGACTACGAAAAGAAAGAAGATGAAGACATTCTTGATTGGCTTCAAGCTATGTTTGGTTTTCAGAAGGATAATGTTGCTTGTCAAAGGGAGCGCTTGATTCTTTTGATCGCTAGTGTTCACATATGGCAATTACCAAAATCTGATCAGCAGCCCAAGTTGGATGATCGTGCTTTAACAGTAGTGATGAAGAAACTTTTCAAAAATTACAAAAAATGGTGCAAGTACTTGGGTCGCAAAAGCAGCCTTTGGTTGCCAACTATTCAGCAGGAAGTACAGCAGCGGAAATTACTATACATGGGTTTATATCTTCTTATATGGGGAGAGGCTGCCAACTTGAGATTCATGCCGGAATGCCTTTGCTACATTTATCATCATATGGCATTTGAATTATATGGAATGCTAACTGGGAGTGTTAGTCCAATTACGGGTGAGCACATAAAGCCAGCCTATGGTGGTGAAGAGGGGGCCTTTTCGGGGAAAGTAGTAACTCCAATATATAATACTATACCAAAGGAGGCTGAAAGGAGCAAAAGAGGAAAATCAAAGCATTCTCAATGGAGAAATTATGATGACTTGAATGAATACTTTTGGTCAGTTGATTGTTTTAAGCTAGGCTGGCCTATGCGTGCTGATGCTGATTTCTTTTACCAGCCTAGTAAAGAGCTTGAAGTTGACAAAGAGAAGACTTCGACGGGGAGACCTCGACGGCAGGAGTGGAGAGTTCGAGGGCTGGGGAGGAGATGGAAAAGACTTTTGAGGAACAAGCTAACACAGCCAGTTTTATGGTGGTTGCAGTGGAGAAGGCAGCGGCAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0009504 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

392

Amino Acids

46.39

Weight (kDa)

9.52

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKS1_dom1 PF14288 215 - 327 1.7e-41 1,3-beta-glucan synthase subunit FKS1, domain-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1162
Acc36I ACCTGC 1 cut(s) 1162
AccB7I CCANNNNNTGG 1 cut(s) 809
AciI CCGC 5 cut(s) 35, 43, 52, 640, 1168
AfaI GTAC 3 cut(s) 230, 584, 633
AfeI AGCGCT 1 cut(s) 452
AfiI CCNNNNNNNGG 3 cut(s) 785, 809, 834
AgsI TTSAA 5 cut(s) 404, 559, 746, 937, 1028
AjnI CCWGG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 4 cut(s) 407, 970, 1024, 1126
AluI AGCT 4 cut(s) 407, 970, 1024, 1126
Alw21I GWGCWC 1 cut(s) 795
Alw26I GTCTC 2 cut(s) 255, 1051
Aor51HI AGCGCT 1 cut(s) 452
AoxI GGCC 2 cut(s) 825, 977
ApeKI GCWGC 6 cut(s) 28, 508, 600, 637, 686, 1165
Asp700I GAANNNNTTC 2 cut(s) 387, 554
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 825
AsuHPI GGTGA 2 cut(s) 800, 827
BbsI GAAGAC 2 cut(s) 390, 1049
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 5 cut(s) 40, 520, 612, 649, 673
BccI CCATC 1 cut(s) 1095
BceAI ACGGC 1 cut(s) 1082
BciT130I CCWGG 1 cut(s) 352
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 255, 1051
BfaI CTAG 4 cut(s) 162, 471, 971, 1014
BfoI RGCGCY 1 cut(s) 454
BfuAI ACCTGC 1 cut(s) 1162
BisI GCNGC 7 cut(s) 29, 509, 601, 638, 687, 1166, 1169
BlsI GCNGC 7 cut(s) 30, 510, 602, 639, 688, 1167, 1170
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 825
BmiI GGNNCC 1 cut(s) 826
BmrFI CCNGG 1 cut(s) 352
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 2 cut(s) 205, 982
BmuI ACTGGG 1 cut(s) 774
BpiI GAAGAC 2 cut(s) 390, 1049
BpuEI CTTGAG 1 cut(s) 715
BsaI GGTCTC 1 cut(s) 1051
BsaJI CCNNGG 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 760, 790
Bsc4I CCNNNNNNNGG 3 cut(s) 785, 809, 834
Bse1I ACTGG 2 cut(s) 769, 1136
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 3 cut(s) 785, 809, 834
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 769, 1136
BseRI GAGGAG 1 cut(s) 1111
BseXI GCAGC 5 cut(s) 40, 520, 612, 649, 673
BseYI CCCAGC 1 cut(s) 1090
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 2 cut(s) 827, 979
BsiHKAI GWGCWC 1 cut(s) 795
BsiSI CCGG 2 cut(s) 66, 707
BslI CCNNNNNNNGG 3 cut(s) 785, 809, 834
BsmAI GTCTC 2 cut(s) 255, 1051
BsmI GAATGC 5 cut(s) 172, 306, 716, 762, 907
BsnI GGCC 2 cut(s) 827, 979
Bso31I GGTCTC 1 cut(s) 1051
Bsp1286I GDGCHC 1 cut(s) 795
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 3 cut(s) 465, 502, 523
BspACI CCGC 5 cut(s) 35, 43, 52, 640, 1168
BspANI GGCC 2 cut(s) 827, 979
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 826
BspMI ACCTGC 1 cut(s) 1162
BspTNI GGTCTC 1 cut(s) 1051
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 2 cut(s) 769, 1136
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 3 cut(s) 465, 502, 523
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 2 cut(s) 319, 538
Bst6I CTCTTC 1 cut(s) 813
BstAPI GCANNNNNTGC 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 804, 977, 987
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 526
BstH2I RGCGCY 1 cut(s) 454
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 3 cut(s) 468, 505, 526
BstMAI GTCTC 2 cut(s) 255, 1051
BstMBI GATC 3 cut(s) 465, 502, 523
BstMWI GCNNNNNNNGC 7 cut(s) 34, 49, 176, 600, 799, 976, 1132
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 5 cut(s) 40, 520, 612, 649, 673
BstV2I GAAGAC 2 cut(s) 390, 1049
BstXI CCANNNNNNTGG 1 cut(s) 1143
BsuRI GGCC 2 cut(s) 827, 979
BtsCI GGATG 1 cut(s) 526
BtsI GCAGTG 1 cut(s) 1160
BtsIMutI CAGTG 1 cut(s) 1160
BveI ACCTGC 1 cut(s) 1162
Cac8I GCNNGC 3 cut(s) 804, 977, 987
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 825
Csp6I GTAC 3 cut(s) 229, 583, 632
CviAII CATG 4 cut(s) 226, 232, 655, 703
CviQI GTAC 3 cut(s) 229, 583, 632
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 467, 504, 525
DpnII GATC 3 cut(s) 465, 502, 523
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
EciI GGCGGA 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 1051
Eco47III AGCGCT 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 350
FaeI CATG 4 cut(s) 229, 235, 658, 706
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FatI CATG 4 cut(s) 225, 231, 654, 702
FauNDI CATATG 2 cut(s) 482, 735
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 7 cut(s) 29, 509, 601, 638, 687, 1166, 1169
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 7 cut(s) 29, 509, 601, 638, 687, 1166, 1169
FspBI CTAG 4 cut(s) 162, 471, 971, 1014
GlaI GCGC 1 cut(s) 452
GluI GCNGC 7 cut(s) 29, 509, 601, 638, 687, 1166, 1169
GsaI CCCAGC 1 cut(s) 1094
HaeII RGCGCY 1 cut(s) 454
HaeIII GGCC 2 cut(s) 827, 979
HapII CCGG 2 cut(s) 66, 707
HhaI GCGC 1 cut(s) 453
Hin1II CATG 4 cut(s) 229, 235, 658, 706
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HinfI GANTC 5 cut(s) 46, 55, 158, 457, 699
HpaII CCGG 2 cut(s) 66, 707
HphI GGTGA 2 cut(s) 800, 827
Hpy166II GTNNAC 3 cut(s) 347, 478, 1033
Hpy188I TCNGA 4 cut(s) 60, 332, 423, 502
Hpy188III TCNNGA 2 cut(s) 296, 392
Hpy8I GTNNAC 3 cut(s) 347, 478, 1033
Hpy99I CGWCG 2 cut(s) 1054, 1068
HpyAV CCTTC 6 cut(s) 6, 117, 277, 352, 418, 1155
HpyCH4III ACNGT 2 cut(s) 319, 538
HpyCH4V TGCA 6 cut(s) 146, 170, 196, 326, 579, 1153
HpyF10VI GCNNNNNNNGC 7 cut(s) 34, 49, 176, 600, 799, 976, 1132
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 4 cut(s) 229, 235, 658, 706
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 3 cut(s) 465, 502, 523
LmnI GCTCC 3 cut(s) 133, 448, 885
Lsp1109I GCAGC 5 cut(s) 40, 520, 612, 649, 673
LweI GCATC 2 cut(s) 205, 982
MaeI CTAG 4 cut(s) 162, 471, 971, 1014
MaeIII GTNAC 1 cut(s) 844
MalI GATC 3 cut(s) 467, 504, 525
MboI GATC 3 cut(s) 465, 502, 523
MboII GAAGA 8 cut(s) 102, 191, 389, 395, 559, 659, 830, 1054
MhlI GDGCHC 1 cut(s) 795
MluCI AATT 7 cut(s) 300, 488, 562, 644, 746, 780, 922
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 2 cut(s) 69, 498
MroXI GAANNNNTTC 2 cut(s) 387, 554
MseI TTAA 2 cut(s) 533, 966
MslI CAYNNNNRTG 2 cut(s) 230, 258
MspA1I CMGCKG 2 cut(s) 640, 1168
MspI CCGG 2 cut(s) 66, 707
MspR9I CCNGG 1 cut(s) 352
Mva1269I GAATGC 5 cut(s) 172, 306, 716, 762, 907
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 7 cut(s) 34, 49, 176, 600, 799, 976, 1132
NdeI CATATG 2 cut(s) 482, 735
NdeII GATC 3 cut(s) 465, 502, 523
NlaIII CATG 4 cut(s) 229, 235, 658, 706
NlaIV GGNNCC 1 cut(s) 826
OliI CACNNNNGTG 1 cut(s) 258
PaqCI CACCTGC 1 cut(s) 1162
PctI GAATGC 5 cut(s) 172, 306, 716, 762, 907
PdmI GAANNNNTTC 2 cut(s) 387, 554
PfeI GAWTC 4 cut(s) 46, 158, 457, 699
PflMI CCANNNNNTGG 1 cut(s) 809
PkrI GCNGC 7 cut(s) 30, 510, 602, 639, 688, 1167, 1170
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 1090
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 826
PspPI GGNCC 1 cut(s) 825
RsaI GTAC 3 cut(s) 230, 584, 633
RsaNI GTAC 3 cut(s) 229, 583, 632
RseI CAYNNNNRTG 2 cut(s) 230, 258
SaqAI TTAA 2 cut(s) 533, 966
SatI GCNGC 7 cut(s) 29, 509, 601, 638, 687, 1166, 1169
Sau3AI GATC 3 cut(s) 465, 502, 523
Sau96I GGNCC 1 cut(s) 825
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 795
SetI ASST 8 cut(s) 219, 346, 409, 972, 1026, 1063, 1128, 1176
SfaNI GCATC 2 cut(s) 205, 982
SmiMI CAYNNNNRTG 2 cut(s) 230, 258
SmlI CTYRAG 1 cut(s) 694
SmoI CTYRAG 1 cut(s) 694
Sse9I AATT 7 cut(s) 300, 488, 562, 644, 746, 780, 922
SsiI CCGC 5 cut(s) 35, 43, 52, 640, 1168
SspMI CTAG 4 cut(s) 162, 471, 971, 1014
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 319, 538
TaqI TCGA 6 cut(s) 21, 156, 356, 1049, 1063, 1084
TasI AATT 7 cut(s) 300, 488, 562, 644, 746, 780, 922
TatI WGTACW 3 cut(s) 228, 582, 631
TauI GCSGC 1 cut(s) 1171
TfiI GAWTC 4 cut(s) 46, 158, 457, 699
Tru1I TTAA 2 cut(s) 533, 966
Tru9I TTAA 2 cut(s) 533, 966
TscAI CASTG 1 cut(s) 1160
TseI GCWGC 6 cut(s) 28, 508, 600, 637, 686, 1165
TspDTI ATGAA 6 cut(s) 165, 296, 396, 560, 691, 954
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 1 cut(s) 1160
Van91I CCANNNNNTGG 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 1143
XmnI GAANNNNTTC 2 cut(s) 387, 554
XspI CTAG 4 cut(s) 162, 471, 971, 1014
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.