Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8187780.1

Orthogroup ID

OG0002059

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 411

Gene Structure 410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8187780.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 289 bp

atggcgtacagaaggggcttcgaccagcagcaaccgcagaggcggattctgcggactcagtctgccggaagttttggacagcctatgttggatagtgaggctgtgccttcttctctggttgatattgctcctattctccgtgttgcaaatgaagtcgaatctaggaatgcaagagttgcctttctctgtcgcttctatgcatttgagaaagctcacagactagatcccacatccagtggctgtggtgttcgccagcttaaaaccgcacttcttcaacgtctagagaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0009504 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

96

Amino Acids

10.88

Weight (kDa)

10.36

Isoelectric Point (pI)

70.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05570 AT1G05570 AT1G05570 AT1G05570 AT2G31960 AT2G31960 AT2G31960 AT2G31960 AT2G31960 AT3G32050 AT5G36870 AT5G36870 AT5G36870 AT5G36870 AT5G36870
fragaria_vesca	FvH4_7g00110 FvH4_7g00110
malus_domestica	MD02G1319100.v1.1 MD07G1001800.v1.1
prunus_persica	Prupe.2G003400_v2.0.a1 Prupe.2G003400_v2.0.a1 Prupe.2G003400_v2.0.a1 Prupe.2G003400_v2.0.a1
pyrus_communis	pycom02g26730 pycom07g00210
rosa_chinensis	RchiOBHm_Chr1g0313311 RchiOBHm_Chr1g0313331 RchiOBHm_Chr1g0313341
rosa_laevigata	RLG00000030802 RLG00000030803 RLG00000030805 RLG00000030806
rosa_multiflora	Rmu_co8187780.1_g000001 Rmu_sc0000035.1_g000021
rosa_roxburghii	Rroxscaffold_4G00332260
rosa_rugosa	RorugPtG0003800.1 RorugPtG0003900 RorugPtG0004000.1
rosa_samantha	Rh1AG002600 Rh1CG001700 Rh1CG007400 Rh1DG002500
rosa_wichuraiana	Rw1G000170 Rw1G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	35, 43, 52, 264
AclWI	GGATC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	275
AluBI	AGCT	2 cut(s)	212, 256
AluI	AGCT	2 cut(s)	212, 256
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	40
BfaI	CTAG	3 cut(s)	162, 221, 281
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	4 cut(s)	35, 43, 52, 264
BspCNI	CTCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 49, 176
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	254
CaiI	CAGNNNCTG	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	7
CviJI	RGCY	6 cut(s)	18, 82, 101, 212, 240, 256
CviKI_1	RGCY	6 cut(s)	18, 82, 101, 212, 240, 256
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	202
FaiI	YATR	2 cut(s)	86, 198
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	3 cut(s)	162, 221, 281
GluI	GCNGC	1 cut(s)	29
HapII	CCGG	1 cut(s)	66
HinfI	GANTC	3 cut(s)	46, 55, 158
HpaII	CCGG	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	6, 117
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	146, 170, 200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 49, 176
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	5 cut(s)	38, 79, 101, 247, 266
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	3 cut(s)	162, 221, 281
MaeII	ACGT	1 cut(s)	277
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	2 cut(s)	102, 263
MflI	RGATCY	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	3 cut(s)	33, 91, 279
Mph1103I	ATGCAT	1 cut(s)	202
MseI	TTAA	1 cut(s)	258
MspI	CCGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	34, 49, 176
NdeII	GATC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	202
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	46, 158
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	223
SchI	GAGTC	1 cut(s)	49
SetI	ASST	3 cut(s)	214, 258, 280
SgeI	CNNG	9 cut(s)	37, 78, 128, 152, 174, 183, 233, 246, 265
SsiI	CCGC	4 cut(s)	35, 43, 52, 264
SspMI	CTAG	3 cut(s)	162, 221, 281
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	2 cut(s)	21, 156
TfiI	GAWTC	2 cut(s)	46, 158
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	58
XbaI	TCTAGA	1 cut(s)	280
XspI	CTAG	3 cut(s)	162, 221, 281
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.