AT3G51100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003134
Physical Location & Seq
Reverse (-)
18980217 .. 18982407
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51100.1

Sequence Viewer

Length: 636 bp
ATGAACGAAGGCTCGAGCGAAGAAGTAACGAGGACGGTAATGGAAGAGAAACCAGAACAGAAACAAAGAGGATCTCTGGAGAAAGGAAGATCGTGCAAAGGCTATTTATATTACTCTTCCACTCTCAAATCCAAGTCTAAGAACCCTCGCTGCGTCGGAATCCCTCGTACTCTCCGTCAAGTTCCTGATTATGTTGTTGGACAATCTGAAGCTGAAGCTTCTAAAGAAGGAAGGACCTTAGCTGATTTTTACTATGGATGTTTGGGTTATTCCGTCTACATGACTGATAAAGACTCATCTGCCATTAAGCAACATACAAAGACTCAACTTCCCGTTTGTGTCGGTCTTGAGATATTAGCAGATAGAAGAGCAGCTTCTGGCAATACTTCATCTGTTCCAGCCCGTGTCCAAAATAGAAAAGATTCTCGGGAGGTGCCTGTGCCTCAGCACCAGAACAATAAACCAGCCTCTGCCACTGCCACTGCCACAAACACAGAAAACGGCTTCTTAACCAGGTTCACAAGAAACGCAAACCTGGTTGCAGCAGGGGTGATGAAGAACATGAAGAGAGTTGGTAACTATGTGAAAGAAACTGTGGATGATTCCTTGGACCCATATCGCAAGCGACCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.45

Weight (kDa)

9.58

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8204 PF26631 28 - 119 4e-43 Domain of unknown function (DUF8204)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 433
AccI GTMKAC 1 cut(s) 276
AclWI GGATC 1 cut(s) 79
AcuI CTGAAG 2 cut(s) 228, 234
AfaI GTAC 1 cut(s) 169
AjnI CCWGG 2 cut(s) 512, 534
AluBI AGCT 4 cut(s) 212, 218, 242, 374
AluI AGCT 4 cut(s) 212, 218, 242, 374
AlwI GGATC 1 cut(s) 79
AlwNI CAGNNNCTG 2 cut(s) 377, 470
Ama87I CYCGRG 2 cut(s) 13, 426
ApeKI GCWGC 3 cut(s) 150, 371, 542
Asp700I GAANNNNTTC 1 cut(s) 421
AspS9I GGNCC 2 cut(s) 234, 610
AsuHPI GGTGA 1 cut(s) 562
AvaI CYCGRG 2 cut(s) 13, 426
AvaII GGWCC 2 cut(s) 234, 610
BanI GGYRCC 1 cut(s) 433
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 3 cut(s) 137, 383, 554
BceAI ACGGC 1 cut(s) 517
BciT130I CCWGG 2 cut(s) 514, 536
BisI GCNGC 3 cut(s) 151, 372, 543
BlsI GCNGC 3 cut(s) 152, 373, 544
Bme1390I CCNGG 2 cut(s) 514, 536
Bme18I GGWCC 2 cut(s) 234, 610
BmeT110I CYCGRG 2 cut(s) 13, 426
BmgT120I GGNCC 2 cut(s) 234, 610
BmiI GGNNCC 2 cut(s) 435, 612
BmrFI CCNGG 2 cut(s) 514, 536
BpmI CTGGAG 1 cut(s) 98
Bpu10I CCTNAGC 2 cut(s) 238, 444
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 606
BseBI CCWGG 2 cut(s) 514, 536
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 2 cut(s) 263, 604
BseMII CTCAG 1 cut(s) 458
BseXI GCAGC 3 cut(s) 137, 383, 554
BshNI GGYRCC 1 cut(s) 433
BsiHKCI CYCGRG 2 cut(s) 13, 426
BsoBI CYCGRG 2 cut(s) 13, 426
Bsp143I GATC 2 cut(s) 71, 89
BspCNI CTCAG 1 cut(s) 457
BspLI GGNNCC 2 cut(s) 435, 612
BspPI GGATC 1 cut(s) 79
BspQI GCTCTTC 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 2 cut(s) 71, 89
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 514, 536
Bst4CI ACNGT 2 cut(s) 37, 595
Bst6I CTCTTC 4 cut(s) 39, 121, 361, 560
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 3 cut(s) 138, 238, 444
BstF5I GGATG 2 cut(s) 263, 604
BstKTI GATC 2 cut(s) 74, 92
BstMBI GATC 2 cut(s) 71, 89
BstNI CCWGG 2 cut(s) 514, 536
BstSCI CCNGG 2 cut(s) 512, 534
BstV1I GCAGC 3 cut(s) 137, 383, 554
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtsCI GGATG 2 cut(s) 263, 604
BtsI GCAGTG 2 cut(s) 474, 480
BtsIMutI CAGTG 2 cut(s) 474, 480
Cac8I GCNNGC 1 cut(s) 623
CaiI CAGNNNCTG 2 cut(s) 377, 470
Cfr13I GGNCC 2 cut(s) 234, 610
CseI GACGC 1 cut(s) 142
CsiI ACCWGGT 2 cut(s) 512, 534
Csp6I GTAC 1 cut(s) 168
CviAII CATG 2 cut(s) 280, 562
CviJI RGCY 9 cut(s) 12, 102, 212, 218, 242, 374, 401, 467, 504
CviKI_1 RGCY 9 cut(s) 12, 102, 212, 218, 242, 374, 401, 467, 504
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 3 cut(s) 138, 238, 444
DpnI GATC 2 cut(s) 73, 91
DpnII GATC 2 cut(s) 71, 89
Eam1104I CTCTTC 4 cut(s) 39, 121, 361, 560
EarI CTCTTC 4 cut(s) 39, 121, 361, 560
Eco130I CCWWGG 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 234, 610
Eco57I CTGAAG 2 cut(s) 228, 234
Eco88I CYCGRG 2 cut(s) 13, 426
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 512, 534
EcoT14I CCWWGG 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 2 cut(s) 283, 565
FaiI YATR 8 cut(s) 109, 192, 255, 281, 315, 563, 582, 616
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FatI CATG 2 cut(s) 279, 561
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 151, 372, 543
FokI GGATG 2 cut(s) 270, 611
Fsp4HI GCNGC 3 cut(s) 151, 372, 543
GluI GCNGC 3 cut(s) 151, 372, 543
GsuI CTGGAG 1 cut(s) 98
HgaI GACGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 283, 565
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 5 cut(s) 159, 293, 322, 422, 602
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 2 cut(s) 277, 519
Hpy188I TCNGA 2 cut(s) 158, 208
Hpy188III TCNNGA 4 cut(s) 77, 185, 347, 428
Hpy8I GTNNAC 2 cut(s) 277, 519
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 221, 225
HpyCH4III ACNGT 2 cut(s) 37, 595
HpyCH4V TGCA 2 cut(s) 96, 542
HpyF3I CTNAG 3 cut(s) 138, 238, 444
Hsp92II CATG 2 cut(s) 283, 565
Kzo9I GATC 2 cut(s) 71, 89
LguI GCTCTTC 1 cut(s) 361
Lsp1109I GCAGC 3 cut(s) 137, 383, 554
MabI ACCWGGT 2 cut(s) 512, 534
MaeIII GTNAC 2 cut(s) 25, 575
MalI GATC 2 cut(s) 73, 91
MboI GATC 2 cut(s) 71, 89
MboII GAAGA 7 cut(s) 32, 56, 99, 108, 378, 568, 577
MflI RGATCY 1 cut(s) 71
MlyI GAGTC 2 cut(s) 287, 316
MmeI TCCRAC 2 cut(s) 136, 178
MnlI CCTC 7 cut(s) 24, 62, 156, 174, 424, 453, 478
MroXI GAANNNNTTC 1 cut(s) 421
MseI TTAA 2 cut(s) 306, 509
MspR9I CCNGG 2 cut(s) 514, 536
MvaI CCWGG 2 cut(s) 514, 536
NdeII GATC 2 cut(s) 71, 89
NlaIII CATG 2 cut(s) 283, 565
NlaIV GGNNCC 2 cut(s) 435, 612
PaeR7I CTCGAG 1 cut(s) 13
PciSI GCTCTTC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 421
PfeI GAWTC 3 cut(s) 159, 422, 602
PkrI GCNGC 3 cut(s) 152, 373, 544
PleI GAGTC 2 cut(s) 287, 316
PpsI GAGTC 2 cut(s) 287, 316
PpuMI RGGWCCY 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 512, 534
PspGI CCWGG 2 cut(s) 512, 534
PspN4I GGNNCC 2 cut(s) 435, 612
PspPI GGNCC 2 cut(s) 234, 610
PspPPI RGGWCCY 1 cut(s) 234
PspXI VCTCGAGB 1 cut(s) 13
PstNI CAGNNNCTG 2 cut(s) 377, 470
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 361
SaqAI TTAA 2 cut(s) 306, 509
SatI GCNGC 3 cut(s) 151, 372, 543
Sau3AI GATC 2 cut(s) 71, 89
Sau96I GGNCC 2 cut(s) 234, 610
SchI GAGTC 2 cut(s) 287, 316
ScrFI CCNGG 2 cut(s) 514, 536
SetI ASST 8 cut(s) 214, 220, 239, 244, 376, 435, 518, 537
SexAI ACCWGGT 2 cut(s) 512, 534
Sfr274I CTCGAG 1 cut(s) 13
SinI GGWCC 2 cut(s) 234, 610
SlaI CTCGAG 1 cut(s) 13
SmlI CTYRAG 2 cut(s) 13, 347
SmoI CTYRAG 2 cut(s) 13, 347
StyD4I CCNGG 2 cut(s) 512, 534
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 2 cut(s) 37, 595
TaqI TCGA 1 cut(s) 14
TaqII GACCGA 1 cut(s) 332
TfiI GAWTC 3 cut(s) 159, 422, 602
Tru1I TTAA 2 cut(s) 306, 509
Tru9I TTAA 2 cut(s) 306, 509
TscAI CASTG 2 cut(s) 481, 487
TseI GCWGC 3 cut(s) 150, 371, 542
TspDTI ATGAA 4 cut(s) 17, 378, 569, 578
TspGWI ACGGA 2 cut(s) 164, 262
TspRI CASTG 2 cut(s) 481, 487
VpaK11BI GGWCC 2 cut(s) 234, 610
XhoI CTCGAG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.