Rh6CG150600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003134
Physical Location & Seq
Reverse (-)
19684971 .. 19690529
5559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG150600.1

Sequence Viewer

Length: 435 bp
ATGGATAAGGAACGCGAAGACGGAGACGAACGATTTCAAAATCAAAACCAAAACCAAAACCAAAACCCTAACCCTAATCAGAGCAGAGGTTCAACAAGGGGAAGATCCTGCAAGGGTTGCCTCTATTACTCTTCTCTACACAAATCCAAATCCAAGTACCCCACCTGCGTTGGCTTCTACAGAACTCTCAATCAAGTACCCAGCTACATTGTGGGAGAAACGGAGTTGGAAGCTTCAAAAGCCGATCGCAGCCTTACGGATTTTAAGTACGGGTGTGTCGGTTACTCGGTGTTCTTGGACAGGAAAGATTCAAGTGATCCACATAAAAAACAGGCGGAATTGCCATTTTGTGTTGGTCTTGAGATATTATATGACAAAAGACCCGCAGACCAGGCTCATGCTCCTACTCCTGCTCATAAAAGTGGAGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.24

Weight (kDa)

8.56

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8204 PF26631 34 - 123 5.4e-42 Domain of unknown function (DUF8204)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 173
AccII CGCG 1 cut(s) 15
AciI CCGC 2 cut(s) 335, 384
AclWI GGATC 2 cut(s) 99, 311
AfaI GTAC 3 cut(s) 158, 198, 269
AgsI TTSAA 4 cut(s) 38, 93, 237, 312
AjnI CCWGG 1 cut(s) 390
AluBI AGCT 2 cut(s) 204, 233
AluI AGCT 2 cut(s) 204, 233
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 2 cut(s) 99, 311
ApeKI GCWGC 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 247
BsiEI CGRYCG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 104, 244, 316
BspACI CCGC 2 cut(s) 335, 384
BspFNI CGCG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 2 cut(s) 99, 311
BssMI GATC 3 cut(s) 104, 244, 316
Bst2UI CCWGG 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 117
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 3 cut(s) 107, 247, 319
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 3 cut(s) 104, 244, 316
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 117, 239, 392
BstNI CCWGG 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 390
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BveI ACCTGC 1 cut(s) 173
Csp6I GTAC 3 cut(s) 157, 197, 268
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 1 cut(s) 398
CviJI RGCY 6 cut(s) 174, 204, 233, 242, 252, 395
CviKI_1 RGCY 6 cut(s) 174, 204, 233, 242, 252, 395
CviQI GTAC 3 cut(s) 157, 197, 268
DpnI GATC 3 cut(s) 106, 246, 318
DpnII GATC 3 cut(s) 104, 244, 316
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
EciI GGCGGA 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 1 cut(s) 401
FaiI YATR 6 cut(s) 324, 370, 372, 399, 417, 431
FatI CATG 1 cut(s) 397
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 250
GsaI CCCAGC 1 cut(s) 204
Hin1II CATG 1 cut(s) 401
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 359
HpyCH4V TGCA 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 239, 392
Hsp92II CATG 1 cut(s) 401
Kzo9I GATC 3 cut(s) 104, 244, 316
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 8 cut(s) 121, 178, 214, 286, 317, 377, 404, 423
Lsp1109I GCAGC 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 281
MalI GATC 3 cut(s) 106, 246, 318
MboI GATC 3 cut(s) 104, 244, 316
MboII GAAGA 3 cut(s) 29, 114, 123
MflI RGATCY 1 cut(s) 104
MluCI AATT 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 3 cut(s) 80, 131, 419
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 392
MvaI CCWGG 1 cut(s) 392
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 3 cut(s) 117, 239, 392
NdeII GATC 3 cut(s) 104, 244, 316
NlaIII CATG 1 cut(s) 401
PaqCI CACCTGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 251
Ple19I CGATCG 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 390
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 1 cut(s) 390
PsuI RGATCY 1 cut(s) 104
PvuI CGATCG 1 cut(s) 247
RsaI GTAC 3 cut(s) 158, 198, 269
RsaNI GTAC 3 cut(s) 157, 197, 268
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 3 cut(s) 104, 244, 316
ScrFI CCNGG 1 cut(s) 392
SetI ASST 5 cut(s) 91, 167, 206, 235, 430
SfcI CTRYAG 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 1 cut(s) 338
SsiI CCGC 2 cut(s) 335, 384
StyD4I CCNGG 1 cut(s) 390
TasI AATT 1 cut(s) 338
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 1 cut(s) 249
TspGWI ACGGA 3 cut(s) 36, 236, 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.