Rroxscaffold_7G00200670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003134
Physical Location & Seq
Forward (+)
48037761 .. 48042272
4512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00200670.1

Sequence Viewer

Length: 501 bp
ATGGATAGGGAAGGCGAAGACGGAGACGAAAGATTTCAAAACCAAAACCAAAACCAAAACCCTAACCCTAACCCTAATCAGAGCAGAGGTTCAACAAGGGGAAGATCCTGCAAGGGTTGCCTCTATTACTCTTCTGTACACAAATCCAAATCCAAGTACCCCACCTGCGTTGGCTTCTACAGAACTCTCAATCAAGTACCCAGCTACATTGTGGGAGAAACGGAGTTGGAAGCTTCAAAAGCCGATCGCAGCCTTACGGATTTTAAGTACGGGTGTGTGGGTTACTCGGTGTTCTTAGACAGGAAAGATTCAAGTGATCCACATAAAAAACAGGCGGAATTGCCATTTTGTGTTGGTCTTGAGATATTATATGACAAAAGACCCGCAGACCAGGCTCATGCTCCTACTCCTGCTCATAAAAGTGGAGACCATGTTCGACCTCTACCTCAACCTCGAAGCTATAAACCACATTCAACCGGAGATGAGTACCTGACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.77

Weight (kDa)

8.54

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8204 PF26631 34 - 123 6.3e-42 Domain of unknown function (DUF8204)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 173
AciI CCGC 2 cut(s) 335, 384
AclWI GGATC 2 cut(s) 99, 311
AfaI GTAC 5 cut(s) 138, 158, 198, 269, 488
AgsI TTSAA 5 cut(s) 38, 93, 237, 312, 474
AjnI CCWGG 2 cut(s) 390, 494
AloI GAACNNNNNNTCC 2 cut(s) 417, 449
AluBI AGCT 3 cut(s) 204, 233, 459
AluI AGCT 3 cut(s) 204, 233, 459
Alw26I GTCTC 2 cut(s) 18, 420
AlwI GGATC 2 cut(s) 99, 311
ApeKI GCWGC 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 261
BciT130I CCWGG 2 cut(s) 392, 496
BcoDI GTCTC 2 cut(s) 18, 420
BfmI CTRYAG 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 392, 496
BmrFI CCNGG 2 cut(s) 392, 496
BpiI GAAGAC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 420
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
BseBI CCWGG 2 cut(s) 392, 496
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 247
BsiEI CGRYCG 1 cut(s) 247
BsiSI CCGG 1 cut(s) 477
BsmAI GTCTC 2 cut(s) 18, 420
BsmBI CGTCTC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 420
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 3 cut(s) 104, 244, 316
BspACI CCGC 2 cut(s) 335, 384
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 2 cut(s) 99, 311
BspTNI GGTCTC 1 cut(s) 420
BsrGI TGTACA 1 cut(s) 136
BssMI GATC 3 cut(s) 104, 244, 316
Bst2UI CCWGG 2 cut(s) 392, 496
Bst6I CTCTTC 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 295
BstKTI GATC 3 cut(s) 107, 247, 319
BstMAI GTCTC 2 cut(s) 18, 420
BstMBI GATC 3 cut(s) 104, 244, 316
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 117, 239, 392
BstNI CCWGG 2 cut(s) 392, 496
BstSCI CCNGG 2 cut(s) 390, 494
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BveI ACCTGC 1 cut(s) 173
CsiI ACCWGGT 1 cut(s) 494
Csp6I GTAC 5 cut(s) 137, 157, 197, 268, 487
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 2 cut(s) 398, 431
CviJI RGCY 7 cut(s) 174, 204, 233, 242, 252, 395, 459
CviKI_1 RGCY 7 cut(s) 174, 204, 233, 242, 252, 395, 459
CviQI GTAC 5 cut(s) 137, 157, 197, 268, 487
DdeI CTNAG 1 cut(s) 295
DpnI GATC 3 cut(s) 106, 246, 318
DpnII GATC 3 cut(s) 104, 244, 316
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
EciI GGCGGA 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 390, 494
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 2 cut(s) 401, 434
FaiI YATR 7 cut(s) 324, 370, 372, 399, 417, 432, 462
FatI CATG 2 cut(s) 397, 430
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 250
GsaI CCCAGC 1 cut(s) 204
HapII CCGG 1 cut(s) 477
Hin1II CATG 2 cut(s) 401, 434
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 1 cut(s) 308
HpaII CCGG 1 cut(s) 477
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 5
HpyCH4V TGCA 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 239, 392
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 2 cut(s) 401, 434
Kzo9I GATC 3 cut(s) 104, 244, 316
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 1 cut(s) 261
MabI ACCWGGT 1 cut(s) 494
MaeIII GTNAC 1 cut(s) 281
MalI GATC 3 cut(s) 106, 246, 318
MboI GATC 3 cut(s) 104, 244, 316
MboII GAAGA 3 cut(s) 29, 114, 123
MflI RGATCY 1 cut(s) 104
MluCI AATT 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 5 cut(s) 80, 131, 450, 456, 462
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 420
MspI CCGG 1 cut(s) 477
MspR9I CCNGG 2 cut(s) 392, 496
MvaI CCWGG 2 cut(s) 392, 496
MwoI GCNNNNNNNGC 3 cut(s) 117, 239, 392
NdeII GATC 3 cut(s) 104, 244, 316
NlaIII CATG 2 cut(s) 401, 434
PaqCI CACCTGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 251
Ple19I CGATCG 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 390, 494
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 2 cut(s) 390, 494
PsuI RGATCY 1 cut(s) 104
PvuI CGATCG 1 cut(s) 247
RsaI GTAC 5 cut(s) 138, 158, 198, 269, 488
RsaNI GTAC 5 cut(s) 137, 157, 197, 268, 487
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 3 cut(s) 104, 244, 316
ScrFI CCNGG 2 cut(s) 392, 496
SexAI ACCWGGT 1 cut(s) 494
SfcI CTRYAG 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 1 cut(s) 338
SsiI CCGC 2 cut(s) 335, 384
StyD4I CCNGG 2 cut(s) 390, 494
TaqI TCGA 2 cut(s) 436, 454
TasI AATT 1 cut(s) 338
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 1 cut(s) 249
TspGWI ACGGA 3 cut(s) 36, 236, 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.