RchiOBHm_Chr2g0099951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003134
Physical Location & Seq
Forward (+)
11959839 .. 11962222
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47464

Sequence Viewer

Length: 588 bp
ATGAATACAAACAGAGACGACGGCAAGAATCCGATAAAAATGTCAAAGAAGGGTAAATCATGCAAAGGCACCCTTTACTATTCCTCCGCCCTCCAATCCAAAGCCAAGAATCCTCGCTGCATCGGCATCCCCCGCACCCTTCCTCAAGTGCCTAACTCAATAGTTGAAGAATCGAAGGCCGATGCTTCTAAAGATGAGCGACATCTTAAAGATTTTTATTATGCCTGTGCCGGGTACTCGGTCTACTTGGATCAAATTGGAAAAGAGTCTTCCGGTGATAAGCGAACGGCAAAAGAATTGCCTGTTTGTGTTGGCCTGGAGTTTTTGGTTGGCAAAAAAGCTCATACTAGTGCACCTGCGGTCGCTCCTACTGCGGCTCATGCTCTCAACAAAGACGATGCTCGCGAAGTCCGTCAACCTCAGAGACCTAAACCCATTCAATCTGCAGGGAGTGATTTCTTGACCAGGTTTTCAAGAAATGCAGATCTTGTCGCATCAGGGGTTTGGAAGAACATGGGTAAAGTTGGGAACTACATGAAAGAAAGTGTTTCTGATATTTTGTACCCCTACAGAGGGCGACCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.47

Weight (kDa)

9.66

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8204 PF26631 17 - 109 1.3e-39 Domain of unknown function (DUF8204)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 405
AciI CCGC 4 cut(s) 87, 133, 359, 374
AclWI GGATC 1 cut(s) 258
AfaI GTAC 2 cut(s) 236, 563
AfiI CCNNNNNNNGG 3 cut(s) 231, 572, 573
AgsI TTSAA 3 cut(s) 167, 440, 474
AhlI ACTAGT 1 cut(s) 347
AjnI CCWGG 2 cut(s) 315, 464
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 2 cut(s) 9, 418
Alw44I GTGCAC 1 cut(s) 351
AlwI GGATC 1 cut(s) 258
AoxI GGCC 2 cut(s) 177, 313
ApaLI GTGCAC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 355
BanI GGYRCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 104
BceAI ACGGC 2 cut(s) 37, 303
BciT130I CCWGG 2 cut(s) 317, 466
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 9, 418
BcuI ACTAGT 1 cut(s) 347
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 2 cut(s) 444, 568
BfuAI ACCTGC 1 cut(s) 364
BglII AGATCT 1 cut(s) 484
BisI GCNGC 2 cut(s) 118, 375
BlsI GCNGC 2 cut(s) 119, 376
Bme1390I CCNGG 3 cut(s) 232, 317, 466
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 3 cut(s) 232, 317, 466
BmsI GCATC 5 cut(s) 129, 135, 172, 388, 503
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 418
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 572, 573
BseBI CCWGG 2 cut(s) 317, 466
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 3 cut(s) 231, 572, 573
BseMII CTCAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 2 cut(s) 179, 315
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 355
BsiSI CCGG 2 cut(s) 231, 273
BslI CCNNNNNNNGG 3 cut(s) 231, 572, 573
BsmAI GTCTC 2 cut(s) 9, 418
BsmBI CGTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 179, 315
Bso31I GGTCTC 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 2 cut(s) 250, 484
Bsp68I TCGCGA 1 cut(s) 405
BspACI CCGC 4 cut(s) 87, 133, 359, 374
BspANI GGCC 2 cut(s) 179, 315
BspCNI CTCAG 1 cut(s) 433
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 364
BspPI GGATC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 418
BssMI GATC 2 cut(s) 250, 484
Bst2UI CCWGG 2 cut(s) 317, 466
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 2 cut(s) 253, 487
BstMAI GTCTC 2 cut(s) 9, 418
BstMBI GATC 2 cut(s) 250, 484
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 4 cut(s) 123, 132, 371, 380
BstNI CCWGG 2 cut(s) 317, 466
BstSCI CCNGG 3 cut(s) 230, 315, 464
BstSFI CTRYAG 2 cut(s) 444, 568
BstSLI GKGCMC 1 cut(s) 355
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 2 cut(s) 179, 315
BtsCI GGATG 1 cut(s) 126
BtuMI TCGCGA 1 cut(s) 405
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 403
CsiI ACCWGGT 1 cut(s) 464
Csp6I GTAC 2 cut(s) 235, 562
CviAII CATG 4 cut(s) 60, 380, 514, 535
CviJI RGCY 5 cut(s) 104, 179, 315, 341, 377
CviKI_1 RGCY 5 cut(s) 104, 179, 315, 341, 377
CviQI GTAC 2 cut(s) 235, 562
DdeI CTNAG 1 cut(s) 420
DpnI GATC 2 cut(s) 252, 486
DpnII GATC 2 cut(s) 250, 484
EciI GGCGGA 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 418
EcoRII CCWGG 2 cut(s) 315, 464
Esp3I CGTCTC 1 cut(s) 9
FaeI CATG 4 cut(s) 63, 383, 517, 538
FaiI YATR 6 cut(s) 61, 222, 345, 381, 515, 536
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 4 cut(s) 59, 379, 513, 534
FauI CCCGC 1 cut(s) 140
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 118, 375
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 118, 375
FspBI CTAG 1 cut(s) 348
GluI GCNGC 2 cut(s) 118, 375
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 2 cut(s) 179, 315
HapII CCGG 2 cut(s) 231, 273
Hin1II CATG 4 cut(s) 63, 383, 517, 538
HincII GTYRAC 1 cut(s) 416
HindII GTYRAC 1 cut(s) 416
HinfI GANTC 4 cut(s) 28, 109, 170, 266
HpaII CCGG 2 cut(s) 231, 273
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 3 cut(s) 244, 353, 416
Hpy188I TCNGA 3 cut(s) 33, 423, 553
Hpy188III TCNNGA 3 cut(s) 404, 460, 474
Hpy8I GTNNAC 3 cut(s) 244, 353, 416
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 43, 149, 169
HpyCH4V TGCA 5 cut(s) 63, 120, 353, 446, 482
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 132, 371, 380
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 4 cut(s) 63, 383, 517, 538
Kzo9I GATC 2 cut(s) 250, 484
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 5 cut(s) 129, 135, 172, 388, 503
MabI ACCWGGT 1 cut(s) 464
MaeI CTAG 1 cut(s) 348
MalI GATC 2 cut(s) 252, 486
MboI GATC 2 cut(s) 250, 484
MboII GAAGA 3 cut(s) 179, 261, 520
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 2 cut(s) 255, 296
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 6 cut(s) 94, 101, 123, 153, 429, 566
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 348
MspI CCGG 2 cut(s) 231, 273
MspR9I CCNGG 3 cut(s) 232, 317, 466
MvaI CCWGG 2 cut(s) 317, 466
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 4 cut(s) 123, 132, 371, 380
NciI CCSGG 1 cut(s) 232
NdeII GATC 2 cut(s) 250, 484
NlaIII CATG 4 cut(s) 63, 383, 517, 538
NlaIV GGNNCC 1 cut(s) 70
NruI TCGCGA 1 cut(s) 405
PaqCI CACCTGC 1 cut(s) 364
PcsI WCGNNNNNNNCGW 2 cut(s) 402, 409
PfeI GAWTC 3 cut(s) 28, 109, 170
PkrI GCNGC 2 cut(s) 119, 376
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 315, 464
PspGI CCWGG 2 cut(s) 315, 464
PspN4I GGNNCC 1 cut(s) 70
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 484
RruI TCGCGA 1 cut(s) 405
RsaI GTAC 2 cut(s) 236, 563
RsaNI GTAC 2 cut(s) 235, 562
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 118, 375
Sau3AI GATC 2 cut(s) 250, 484
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 3 cut(s) 232, 317, 466
SduI GDGCHC 1 cut(s) 355
SetI ASST 5 cut(s) 343, 358, 421, 430, 470
SexAI ACCWGGT 1 cut(s) 464
SfaNI GCATC 5 cut(s) 129, 135, 172, 388, 503
SfcI CTRYAG 2 cut(s) 444, 568
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
SpeI ACTAGT 1 cut(s) 347
Sse9I AATT 2 cut(s) 255, 296
SsiI CCGC 4 cut(s) 87, 133, 359, 374
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 3 cut(s) 230, 315, 464
TaqI TCGA 1 cut(s) 173
TaqII GACCGA 1 cut(s) 229
TasI AATT 2 cut(s) 255, 296
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 3 cut(s) 28, 109, 170
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 17, 551
TspGWI ACGGA 1 cut(s) 401
VneI GTGCAC 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.