Rmu_sc0013563.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013563.1
Physical Location & Seq
Forward (+)
2359 .. 7256
4898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013563.1_g000002.1.cds

Sequence Viewer

Length: 1314 bp
atgacagcaccgcctgactctagagccttccgacttcctcatcgtctaacgccatcttttccgatctcgcacccaacacagaagcgaggtaggatctactccacagttcgaccactcgaaactcggcacgggccgcacaacgcggtacaggtaccacccatcaaaaccttcagcaaagaccccatagggctagaccatgtgtcgcccttccggcagcatccccacgacgtcagggagacacaggagagccaccgaacgaggctggagatgccttcgccgccgcaaagctttaggtccccacttgttaccttgttaaccaagtgtgacgcagaccgagcaaaaggggcttctatacaattacaaaatgagagagcaccaccagtagacgacgacgccatggccatgaatacaaacagagacgacggcaagaatccgataaaaatgtcaaagaagggtaaatcatgcaaaggcaccgtttactattcctccgccctccaatccaaagccaagaatcctcgctgcatcggcatcccccgcacccttcctcaagtgcctaactcaatagttgaagaatcgaaggccgatgcttctaaagatgagcgacatcttaaagatttttattatgcctgtgccgggtactcggtctacttggatcaaatcggaaaagagtcttccggtgataagcgaacggcaaaagaattgcctgtttgtgttggcctggagtttttggttggcaaaaaagctcatactagtgcatctgctgttactcctactgcggctcatgctctaaacaaagacgatgctcgtgaagtccgtcaacctcagagacctaaacccattcaatctgcagggagtgatttcttgaccaggttttcaagaaatgcagatcttgtcgcatcaggggtttggaagaacatgggtaaagttgggaactacatgaaagaaagtgtttctgatattttgtacccctacagagggcgaccaaaaaacttatcaaaacttaagagcttgcgtggccgtggtgttatcactgttatgggactagacttcaagattagctctagcgctagagctagctctgtcaagcagttgcttctcaagtatcaccaagaagtgcaacaacttctctctgacagtactatctgctttgtgggtaagggaatgacatcgaaacttcattcttatcagcagtatctgcttgatcatagatgtaagacaagtgttgacattggtcatttggctactagggttctgaagaaaccgatattggagaagagcagcctggtggagttggcatggctatcgagccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

437

Amino Acids

48.63

Weight (kDa)

9.83

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
Acc65I GGTACC 1 cut(s) 151
AccB1I GGYRCC 2 cut(s) 151, 470
AccI GTMKAC 2 cut(s) 384, 645
AccII CGCG 1 cut(s) 143
AciI CCGC 8 cut(s) 11, 134, 143, 278, 281, 489, 535, 776
AclWI GGATC 2 cut(s) 101, 660
AcoI YGGCCR 2 cut(s) 399, 1015
AcuI CTGAAG 2 cut(s) 154, 1274
AcyI GRCGYC 2 cut(s) 228, 393
AfaI GTAC 5 cut(s) 147, 153, 638, 965, 1138
AfeI AGCGCT 1 cut(s) 1066
AfiI CCNNNNNNNGG 3 cut(s) 633, 974, 975
AflII CTTAAG 1 cut(s) 1001
AgsI TTSAA 4 cut(s) 569, 842, 876, 1051
AhdI GACNNNNNGTC 1 cut(s) 199
AhlI ACTAGT 1 cut(s) 749
AjnI CCWGG 3 cut(s) 717, 866, 1281
AjuI GAANNNNNNNTTGG 2 cut(s) 1250, 1282
AluBI AGCT 6 cut(s) 288, 743, 1008, 1059, 1073, 1077
AluI AGCT 6 cut(s) 288, 743, 1008, 1059, 1073, 1077
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 3 cut(s) 230, 411, 820
AlwI GGATC 2 cut(s) 101, 660
AlwNI CAGNNNCTG 1 cut(s) 1195
Aor51HI AGCGCT 1 cut(s) 1066
AoxI GGCC 5 cut(s) 131, 399, 579, 715, 1015
ApeKI GCWGC 3 cut(s) 214, 519, 1278
Asp718I GGTACC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 1067
AspS9I GGNCC 2 cut(s) 131, 294
AsuC2I CCSGG 1 cut(s) 634
AsuHPI GGTGA 2 cut(s) 689, 1097
AsuNHI GCTAGC 1 cut(s) 1073
AvaII GGWCC 1 cut(s) 294
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 2 cut(s) 151, 470
BauI CACGAG 1 cut(s) 804
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 3 cut(s) 226, 506, 1290
BccI CCATC 2 cut(s) 61, 167
BceAI ACGGC 3 cut(s) 439, 705, 1002
BcgI CGANNNNNNTGC 1 cut(s) 1284
BciT130I CCWGG 3 cut(s) 719, 868, 1283
BclI TGATCA 1 cut(s) 1201
BcnI CCSGG 1 cut(s) 634
BcoDI GTCTC 3 cut(s) 230, 411, 820
BcuI ACTAGT 1 cut(s) 749
BfaI CTAG 9 cut(s) 21, 191, 750, 1043, 1062, 1068, 1074, 1245, 1312
BfmI CTRYAG 2 cut(s) 846, 970
BfoI RGCGCY 1 cut(s) 1068
BfrI CTTAAG 1 cut(s) 1001
BglI GCCNNNNNGGC 1 cut(s) 211
BglII AGATCT 1 cut(s) 886
BisI GCNGC 7 cut(s) 134, 215, 278, 281, 520, 777, 1279
BlsI GCNGC 7 cut(s) 135, 216, 279, 282, 521, 778, 1280
BmcAI AGTACT 1 cut(s) 1138
Bme1390I CCNGG 4 cut(s) 634, 719, 868, 1283
Bme18I GGWCC 1 cut(s) 294
BmeRI GACNNNNNGTC 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 131, 294
BmiI GGNNCC 3 cut(s) 153, 296, 472
BmrFI CCNGG 4 cut(s) 634, 719, 868, 1283
BmsI GCATC 8 cut(s) 226, 258, 531, 537, 574, 764, 790, 905
BmtI GCTAGC 1 cut(s) 1077
BoxI GACNNNNGTC 1 cut(s) 1230
BpiI GAAGAC 1 cut(s) 663
BpmI CTGGAG 2 cut(s) 284, 740
BpuEI CTTGAG 2 cut(s) 531, 1082
BpuMI CCSGG 1 cut(s) 634
BsaHI GRCGYC 2 cut(s) 228, 393
BsaI GGTCTC 1 cut(s) 820
BsaJI CCNNGG 2 cut(s) 396, 1018
BsaWI WCCGGW 1 cut(s) 674
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 3 cut(s) 633, 974, 975
Bse1I ACTGG 1 cut(s) 380
BseBI CCWGG 3 cut(s) 719, 868, 1283
BseDI CCNNGG 2 cut(s) 396, 1018
BseGI GGATG 2 cut(s) 217, 528
BseLI CCNNNNNNNGG 3 cut(s) 633, 974, 975
BseMII CTCAG 1 cut(s) 836
BseNI ACTGG 1 cut(s) 380
BseXI GCAGC 3 cut(s) 226, 506, 1290
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 5 cut(s) 133, 401, 581, 717, 1017
BshNI GGYRCC 2 cut(s) 151, 470
BsiHKAI GWGCWC 1 cut(s) 376
BsiSI CCGG 3 cut(s) 211, 633, 675
BslFI GGGAC 2 cut(s) 280, 1053
BslI CCNNNNNNNGG 3 cut(s) 633, 974, 975
BsmAI GTCTC 3 cut(s) 230, 411, 820
BsmBI CGTCTC 1 cut(s) 411
BsmFI GGGAC 2 cut(s) 280, 1053
BsnI GGCC 5 cut(s) 133, 401, 581, 717, 1017
Bso31I GGTCTC 1 cut(s) 820
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 5 cut(s) 63, 93, 652, 886, 1201
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 8 cut(s) 11, 134, 143, 278, 281, 489, 535, 776
BspANI GGCC 5 cut(s) 133, 401, 581, 717, 1017
BspCNI CTCAG 1 cut(s) 835
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 153, 296, 472
BspMAI CTGCAG 1 cut(s) 850
BspOI GCTAGC 1 cut(s) 1077
BspPI GGATC 2 cut(s) 101, 660
BspQI GCTCTTC 1 cut(s) 1268
BspT107I GGYRCC 2 cut(s) 151, 470
BspTI CTTAAG 1 cut(s) 1001
BspTNI GGTCTC 1 cut(s) 820
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 396, 1018
BssMI GATC 5 cut(s) 63, 93, 652, 886, 1201
BssNI GRCGYC 2 cut(s) 228, 393
BssSI CACGAG 1 cut(s) 804
BssT1I CCWWGG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 804
Bst2UI CCWGG 3 cut(s) 719, 868, 1283
Bst4CI ACNGT 4 cut(s) 106, 475, 1033, 1136
Bst6I CTCTTC 1 cut(s) 1268
BstACI GRCGYC 2 cut(s) 228, 393
BstAFI CTTAAG 1 cut(s) 1001
BstAPI GCANNNNNTGC 1 cut(s) 1195
BstC8I GCNNGC 2 cut(s) 1010, 1075
BstDEI CTNAG 1 cut(s) 822
BstDSI CCRYGG 2 cut(s) 396, 1018
BstF5I GGATG 2 cut(s) 217, 528
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 1068
BstHHI GCGC 1 cut(s) 1067
BstKTI GATC 5 cut(s) 66, 96, 655, 889, 1204
BstMAI GTCTC 3 cut(s) 230, 411, 820
BstMBI GATC 5 cut(s) 63, 93, 652, 886, 1201
BstNI CCWGG 3 cut(s) 719, 868, 1283
BstPAI GACNNNNGTC 1 cut(s) 1230
BstSCI CCNGG 4 cut(s) 632, 717, 866, 1281
BstSFI CTRYAG 2 cut(s) 846, 970
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 226, 506, 1290
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 2 cut(s) 93, 886
BstYI RGATCY 2 cut(s) 93, 886
BsuRI GGCC 5 cut(s) 133, 401, 581, 717, 1017
BtgI CCRYGG 2 cut(s) 396, 1018
BtsCI GGATG 2 cut(s) 217, 528
BtsIMutI CAGTG 1 cut(s) 1029
Cac8I GCNNGC 2 cut(s) 1010, 1075
CaiI CAGNNNCTG 1 cut(s) 1195
CfoI GCGC 1 cut(s) 1067
Cfr13I GGNCC 2 cut(s) 131, 294
CseI GACGC 2 cut(s) 335, 401
CsiI ACCWGGT 1 cut(s) 866
Csp6I GTAC 5 cut(s) 146, 152, 637, 964, 1137
CviAII CATG 8 cut(s) 197, 397, 403, 462, 782, 916, 937, 1296
CviQI GTAC 5 cut(s) 146, 152, 637, 964, 1137
DdeI CTNAG 1 cut(s) 822
DpnI GATC 5 cut(s) 65, 95, 654, 888, 1203
DpnII GATC 5 cut(s) 63, 93, 652, 886, 1201
DriI GACNNNNNGTC 1 cut(s) 199
EaeI YGGCCR 2 cut(s) 399, 1015
Eam1104I CTCTTC 1 cut(s) 1268
Eam1105I GACNNNNNGTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 1268
EciI GGCGGA 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 820
Eco47I GGWCC 1 cut(s) 294
Eco47III AGCGCT 1 cut(s) 1066
Eco57I CTGAAG 2 cut(s) 154, 1274
EcoO109I RGGNCCY 1 cut(s) 294
EcoRII CCWGG 3 cut(s) 717, 866, 1281
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 8 cut(s) 200, 400, 406, 465, 785, 919, 940, 1299
FaqI GGGAC 2 cut(s) 280, 1053
FatI CATG 8 cut(s) 196, 396, 402, 461, 781, 915, 936, 1295
FauI CCCGC 1 cut(s) 542
FbaI TGATCA 1 cut(s) 1201
FblI GTMKAC 2 cut(s) 384, 645
Fnu4HI GCNGC 7 cut(s) 134, 215, 278, 281, 520, 777, 1279
FokI GGATG 2 cut(s) 204, 515
Fsp4HI GCNGC 7 cut(s) 134, 215, 278, 281, 520, 777, 1279
FspBI CTAG 9 cut(s) 21, 191, 750, 1043, 1062, 1068, 1074, 1245, 1312
GlaI GCGC 1 cut(s) 1066
GluI GCNGC 7 cut(s) 134, 215, 278, 281, 520, 777, 1279
GsuI CTGGAG 2 cut(s) 284, 740
HaeII RGCGCY 1 cut(s) 1068
HaeIII GGCC 5 cut(s) 133, 401, 581, 717, 1017
HapII CCGG 3 cut(s) 211, 633, 675
HgaI GACGC 2 cut(s) 335, 401
HhaI GCGC 1 cut(s) 1067
Hin1I GRCGYC 2 cut(s) 228, 393
Hin1II CATG 8 cut(s) 200, 400, 406, 465, 785, 919, 940, 1299
Hin6I GCGC 1 cut(s) 1065
HinP1I GCGC 1 cut(s) 1065
HincII GTYRAC 3 cut(s) 315, 818, 1225
HindII GTYRAC 3 cut(s) 315, 818, 1225
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 5 cut(s) 17, 430, 511, 572, 668
HpaI GTTAAC 1 cut(s) 315
HpaII CCGG 3 cut(s) 211, 633, 675
HphI GGTGA 2 cut(s) 689, 1097
Hpy166II GTNNAC 6 cut(s) 315, 385, 478, 646, 818, 1225
Hpy188I TCNGA 8 cut(s) 32, 63, 435, 662, 825, 955, 1132, 1254
Hpy188III TCNNGA 5 cut(s) 21, 806, 862, 876, 1051
Hpy8I GTNNAC 6 cut(s) 315, 385, 478, 646, 818, 1225
Hpy99I CGWCG 4 cut(s) 230, 392, 395, 425
HpyAV CCTTC 7 cut(s) 37, 178, 217, 282, 445, 551, 571
HpyCH4III ACNGT 4 cut(s) 106, 475, 1033, 1136
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 6 cut(s) 465, 522, 755, 848, 884, 1117
HpyF3I CTNAG 1 cut(s) 822
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 2 cut(s) 228, 393
Hsp92II CATG 8 cut(s) 200, 400, 406, 465, 785, 919, 940, 1299
HspAI GCGC 1 cut(s) 1065
KpnI GGTACC 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 1201
KspAI GTTAAC 1 cut(s) 315
Kzo9I GATC 5 cut(s) 63, 93, 652, 886, 1201
LguI GCTCTTC 1 cut(s) 1268
Lsp1109I GCAGC 3 cut(s) 226, 506, 1290
LweI GCATC 8 cut(s) 226, 258, 531, 537, 574, 764, 790, 905
MabI ACCWGGT 1 cut(s) 866
MaeI CTAG 9 cut(s) 21, 191, 750, 1043, 1062, 1068, 1074, 1245, 1312
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 304, 323, 763
MalI GATC 5 cut(s) 65, 95, 654, 888, 1203
MboI GATC 5 cut(s) 63, 93, 652, 886, 1201
MboII GAAGA 5 cut(s) 581, 663, 922, 1267, 1285
MflI RGATCY 2 cut(s) 93, 886
MhlI GDGCHC 1 cut(s) 376
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 2 cut(s) 356, 698
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 2 cut(s) 11, 677
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 9 cut(s) 48, 80, 252, 496, 503, 525, 555, 831, 968
Mox20I TGGCCA 1 cut(s) 401
MscI TGGCCA 1 cut(s) 401
MseI TTAA 3 cut(s) 314, 609, 1002
MslI CAYNNNNRTG 3 cut(s) 401, 750, 1034
Msp20I TGGCCA 1 cut(s) 401
MspCI CTTAAG 1 cut(s) 1001
MspI CCGG 3 cut(s) 211, 633, 675
MspR9I CCNGG 4 cut(s) 634, 719, 868, 1283
MvaI CCWGG 3 cut(s) 719, 868, 1283
MvnI CGCG 1 cut(s) 143
NciI CCSGG 1 cut(s) 634
NcoI CCATGG 1 cut(s) 396
NdeII GATC 5 cut(s) 63, 93, 652, 886, 1201
NheI GCTAGC 1 cut(s) 1073
NlaIII CATG 8 cut(s) 200, 400, 406, 465, 785, 919, 940, 1299
NlaIV GGNNCC 3 cut(s) 153, 296, 472
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 1268
PcsI WCGNNNNNNNCGW 1 cut(s) 811
PfeI GAWTC 3 cut(s) 430, 511, 572
PkrI GCNGC 7 cut(s) 135, 216, 279, 282, 521, 778, 1280
PleI GAGTC 2 cut(s) 11, 676
PpsI GAGTC 2 cut(s) 11, 676
PpuMI RGGWCCY 1 cut(s) 294
PshAI GACNNNNGTC 1 cut(s) 1230
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 3 cut(s) 717, 866, 1281
PspGI CCWGG 3 cut(s) 717, 866, 1281
PspN4I GGNNCC 3 cut(s) 153, 296, 472
PspPI GGNCC 2 cut(s) 131, 294
PspPPI RGGWCCY 1 cut(s) 294
PstI CTGCAG 1 cut(s) 850
PstNI CAGNNNCTG 1 cut(s) 1195
PsuI RGATCY 2 cut(s) 93, 886
RsaI GTAC 5 cut(s) 147, 153, 638, 965, 1138
RsaNI GTAC 5 cut(s) 146, 152, 637, 964, 1137
RseI CAYNNNNRTG 3 cut(s) 401, 750, 1034
SapI GCTCTTC 1 cut(s) 1268
SaqAI TTAA 3 cut(s) 314, 609, 1002
SatI GCNGC 7 cut(s) 134, 215, 278, 281, 520, 777, 1279
Sau3AI GATC 5 cut(s) 63, 93, 652, 886, 1201
Sau96I GGNCC 2 cut(s) 131, 294
ScaI AGTACT 1 cut(s) 1138
SchI GAGTC 2 cut(s) 11, 677
ScrFI CCNGG 4 cut(s) 634, 719, 868, 1283
SduI GDGCHC 1 cut(s) 376
SexAI ACCWGGT 1 cut(s) 866
SfaNI GCATC 8 cut(s) 226, 258, 531, 537, 574, 764, 790, 905
SfcI CTRYAG 2 cut(s) 846, 970
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 3 cut(s) 401, 750, 1034
SmlI CTYRAG 3 cut(s) 546, 1001, 1097
SmoI CTYRAG 3 cut(s) 546, 1001, 1097
SpeI ACTAGT 1 cut(s) 749
Sse9I AATT 2 cut(s) 356, 698
SsiI CCGC 8 cut(s) 11, 134, 143, 278, 281, 489, 535, 776
SspMI CTAG 9 cut(s) 21, 191, 750, 1043, 1062, 1068, 1074, 1245, 1312
StyD4I CCNGG 4 cut(s) 632, 717, 866, 1281
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 4 cut(s) 106, 475, 1033, 1136
TaiI ACGT 1 cut(s) 231
TaqI TCGA 5 cut(s) 109, 117, 575, 1169, 1304
TaqII GACCGA 2 cut(s) 348, 631
TasI AATT 2 cut(s) 356, 698
TatI WGTACW 1 cut(s) 1136
TauI GCSGC 4 cut(s) 136, 280, 283, 779
TfiI GAWTC 3 cut(s) 430, 511, 572
Tru1I TTAA 3 cut(s) 314, 609, 1002
Tru9I TTAA 3 cut(s) 314, 609, 1002
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 3 cut(s) 214, 519, 1278
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 419, 953, 1166
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 1 cut(s) 1036
Vha464I CTTAAG 1 cut(s) 1001
VpaK11BI GGWCC 1 cut(s) 294
XbaI TCTAGA 1 cut(s) 20
XmiI GTMKAC 2 cut(s) 384, 645
XspI CTAG 9 cut(s) 21, 191, 750, 1043, 1062, 1068, 1074, 1245, 1312
ZraI GACGTC 1 cut(s) 229
ZrmI AGTACT 1 cut(s) 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.