Rw2G010370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003134
Physical Location & Seq
Forward (+)
10451586 .. 10454089
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G010370.1

Sequence Viewer

Length: 594 bp
ATGGCCATGAATACAAACAGAGACGACGGCAAGAATCCGATAAAAATGTCAAAGAAGGGTAAATCATGCAAAGGCACCGTTTACTATTCCTCCGCCCTCCAATCCAAAGCCAAGAATCCTCGCTGCATCGGCATCCCCCGCACCCTTCCTCAAGTGCCTAACTCAATAGTTGAAGAATCGAAGGCCGATGCTTCTAAAGATGAGCGACATCTTAAAGATTTTTATTATGCCTGTGCCGGGTACTCGGTCTACTTGGATCAAATTGGAAAAGAGTCTTCCGGTGATAAGCGAACGGCAAAAGAATTGCCTGTTTGTGTTGGCCTGGAGTTTTTGGTTGGCAAAAAAGCTCATACTAGTGCACCTGCTGTTGCTCCTACCGCGGCTCATGCTCTCAACAAAGACGATGCTCGCGAAGTCCGTCAACCTCAGAGACCTAAACCCATTCAATCTGCAGGGAGTGATTTCTTGACCAGGTTTTCAAGAAATGCAGATCTTGTCGCATCAGGGGTTTGGAAGAACATGGGTAAAGTTGGGAACTACATGAAAGAAAGTGTTTCTGATATTTTGTACCCCTACAGAGGGCGACCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.66

Weight (kDa)

9.66

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8204 PF26631 19 - 111 3.5e-39 Domain of unknown function (DUF8204)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
Acc36I ACCTGC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 249
AccII CGCG 2 cut(s) 380, 411
AciI CCGC 4 cut(s) 93, 139, 378, 380
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 242, 569
AfiI CCNNNNNNNGG 3 cut(s) 237, 578, 579
AgsI TTSAA 3 cut(s) 173, 446, 480
AhlI ACTAGT 1 cut(s) 353
AjnI CCWGG 2 cut(s) 321, 470
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 15, 424
Alw44I GTGCAC 1 cut(s) 357
AlwI GGATC 1 cut(s) 264
AoxI GGCC 3 cut(s) 3, 183, 319
ApaLI GTGCAC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 123
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 361
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 1 cut(s) 110
BceAI ACGGC 2 cut(s) 43, 309
BciT130I CCWGG 2 cut(s) 323, 472
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 15, 424
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 2 cut(s) 450, 574
BfuAI ACCTGC 1 cut(s) 370
BglII AGATCT 1 cut(s) 490
BisI GCNGC 2 cut(s) 124, 381
BlsI GCNGC 2 cut(s) 125, 382
Bme1390I CCNGG 3 cut(s) 238, 323, 472
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 3 cut(s) 238, 323, 472
BmsI GCATC 5 cut(s) 135, 141, 178, 394, 509
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 578, 579
BseBI CCWGG 2 cut(s) 323, 472
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 237, 578, 579
BseMII CTCAG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 2 cut(s) 380, 411
BshFI GGCC 3 cut(s) 5, 185, 321
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 2 cut(s) 237, 279
BslI CCNNNNNNNGG 3 cut(s) 237, 578, 579
BsmAI GTCTC 2 cut(s) 15, 424
BsmBI CGTCTC 1 cut(s) 15
BsnI GGCC 3 cut(s) 5, 185, 321
Bso31I GGTCTC 1 cut(s) 424
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 2 cut(s) 256, 490
Bsp68I TCGCGA 1 cut(s) 411
BspACI CCGC 4 cut(s) 93, 139, 378, 380
BspANI GGCC 3 cut(s) 5, 185, 321
BspCNI CTCAG 1 cut(s) 439
BspFNI CGCG 2 cut(s) 380, 411
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 2 cut(s) 256, 490
Bst2UI CCWGG 2 cut(s) 323, 472
Bst4CI ACNGT 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 2 cut(s) 380, 411
BstKTI GATC 2 cut(s) 259, 493
BstMAI GTCTC 2 cut(s) 15, 424
BstMBI GATC 2 cut(s) 256, 490
BstMWI GCNNNNNNNGC 4 cut(s) 129, 138, 377, 386
BstNI CCWGG 2 cut(s) 323, 472
BstSCI CCNGG 3 cut(s) 236, 321, 470
BstSFI CTRYAG 2 cut(s) 450, 574
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 2 cut(s) 380, 411
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 3 cut(s) 5, 185, 321
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 132
BtuMI TCGCGA 1 cut(s) 411
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 409
Cfr42I CCGCGG 1 cut(s) 381
CsiI ACCWGGT 1 cut(s) 470
Csp6I GTAC 2 cut(s) 241, 568
CviAII CATG 5 cut(s) 7, 66, 386, 520, 541
CviJI RGCY 6 cut(s) 5, 110, 185, 321, 347, 383
CviKI_1 RGCY 6 cut(s) 5, 110, 185, 321, 347, 383
CviQI GTAC 2 cut(s) 241, 568
DdeI CTNAG 1 cut(s) 426
DpnI GATC 2 cut(s) 258, 492
DpnII GATC 2 cut(s) 256, 490
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 321, 470
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 5 cut(s) 10, 69, 389, 523, 544
FaiI YATR 7 cut(s) 8, 67, 228, 351, 387, 521, 542
FatI CATG 5 cut(s) 6, 65, 385, 519, 540
FauI CCCGC 1 cut(s) 146
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 124, 381
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 124, 381
FspBI CTAG 1 cut(s) 354
GluI GCNGC 2 cut(s) 124, 381
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 3 cut(s) 5, 185, 321
HapII CCGG 2 cut(s) 237, 279
Hin1II CATG 5 cut(s) 10, 69, 389, 523, 544
HincII GTYRAC 1 cut(s) 422
HindII GTYRAC 1 cut(s) 422
HinfI GANTC 4 cut(s) 34, 115, 176, 272
HpaII CCGG 2 cut(s) 237, 279
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 4 cut(s) 82, 250, 359, 422
Hpy188I TCNGA 3 cut(s) 39, 429, 559
Hpy188III TCNNGA 3 cut(s) 410, 466, 480
Hpy8I GTNNAC 4 cut(s) 82, 250, 359, 422
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 3 cut(s) 49, 155, 175
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 5 cut(s) 69, 126, 359, 452, 488
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 138, 377, 386
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 5 cut(s) 10, 69, 389, 523, 544
KspI CCGCGG 1 cut(s) 381
Kzo9I GATC 2 cut(s) 256, 490
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 5 cut(s) 135, 141, 178, 394, 509
MabI ACCWGGT 1 cut(s) 470
MaeI CTAG 1 cut(s) 354
MalI GATC 2 cut(s) 258, 492
MboI GATC 2 cut(s) 256, 490
MboII GAAGA 3 cut(s) 185, 267, 526
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 361
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 261, 302
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 6 cut(s) 100, 107, 129, 159, 435, 572
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 354
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 2 cut(s) 237, 279
MspR9I CCNGG 3 cut(s) 238, 323, 472
MvaI CCWGG 2 cut(s) 323, 472
MvnI CGCG 2 cut(s) 380, 411
MwoI GCNNNNNNNGC 4 cut(s) 129, 138, 377, 386
NciI CCSGG 1 cut(s) 238
NdeII GATC 2 cut(s) 256, 490
NlaIII CATG 5 cut(s) 10, 69, 389, 523, 544
NlaIV GGNNCC 1 cut(s) 76
NruI TCGCGA 1 cut(s) 411
PaqCI CACCTGC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 2 cut(s) 408, 415
PfeI GAWTC 3 cut(s) 34, 115, 176
PkrI GCNGC 2 cut(s) 125, 382
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 321, 470
PspGI CCWGG 2 cut(s) 321, 470
PspN4I GGNNCC 1 cut(s) 76
PstI CTGCAG 1 cut(s) 454
PsuI RGATCY 1 cut(s) 490
RruI TCGCGA 1 cut(s) 411
RsaI GTAC 2 cut(s) 242, 569
RsaNI GTAC 2 cut(s) 241, 568
RseI CAYNNNNRTG 1 cut(s) 354
SacII CCGCGG 1 cut(s) 381
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 124, 381
Sau3AI GATC 2 cut(s) 256, 490
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 238, 323, 472
SduI GDGCHC 1 cut(s) 361
SetI ASST 5 cut(s) 349, 364, 427, 436, 476
SexAI ACCWGGT 1 cut(s) 470
SfaNI GCATC 5 cut(s) 135, 141, 178, 394, 509
SfcI CTRYAG 2 cut(s) 450, 574
Sfr303I CCGCGG 1 cut(s) 381
SgrBI CCGCGG 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
SpeI ACTAGT 1 cut(s) 353
Sse9I AATT 2 cut(s) 261, 302
SsiI CCGC 4 cut(s) 93, 139, 378, 380
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 3 cut(s) 236, 321, 470
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 179
TaqII GACCGA 1 cut(s) 235
TasI AATT 2 cut(s) 261, 302
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 3 cut(s) 34, 115, 176
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 23, 557
TspGWI ACGGA 1 cut(s) 407
VneI GTGCAC 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.