Rroxscaffold_2G00142710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003134
Physical Location & Seq
Reverse (-)
80801016 .. 80803503
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142710.1

Sequence Viewer

Length: 627 bp
ATGGCCATGAATACAAACAGAGACGACGGCAAGAATCCGATAAAAATGTCAAAGAAGGGTAAATCATGCAAAGGCACCCTTTACTATTCCTCCGCCCTCCAATCCAAAGCCAAGAATCCTCGCTGCATCGGCATCCCCCGCACGCTTCCTCAAGTGCCTAACTCAATTGTTGAAGAATCAAAGGCCGATGCTTCTAAAGATGAGCGACATCTTAAAGATTTTTATTATGCCTGTGCCGGGTACTCGGTCTACCTGGATCAAATTGGAAAAGAGTCTTCCGGTGATAAGCGAACGGCAAAAGAATTGCCTGTTTGTATTGGCCTGGAGTTTTTGGTTGGCAAAAAAGCTCATACTAGTGCACCTGCTGTCGCTCCTACTGCAGCTCATGCTCTCAACAAAGACGATGCTCGCGAAGTCTGTCAACCTCAGAGACCTAAACCCATTCAATCTGCAGGGAGTGATTTCTTGACCAGGCAAGCATTTAATTTGAGTATTCAACTCATTAAGTTTTCAAGAAATGCAGATCTTGTCGCATCAGGGGTTTGGAAGAACATGGGTAAAGTTGGGAACTACATGAAAGAAAGTGTTTCTGATATTTTGTACCCCTACAGAGGGCGACCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.89

Weight (kDa)

9.59

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8204 PF26631 19 - 111 2.6e-39 Domain of unknown function (DUF8204)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
Acc36I ACCTGC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 411
AciI CCGC 2 cut(s) 93, 139
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 242, 602
AfiI CCNNNNNNNGG 3 cut(s) 237, 611, 612
AgsI TTSAA 4 cut(s) 173, 446, 497, 513
AhlI ACTAGT 1 cut(s) 353
AjnI CCWGG 3 cut(s) 252, 321, 470
AluBI AGCT 2 cut(s) 347, 383
AluI AGCT 2 cut(s) 347, 383
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 15, 424
Alw44I GTGCAC 1 cut(s) 357
AlwI GGATC 1 cut(s) 264
AoxI GGCC 3 cut(s) 3, 183, 319
ApaLI GTGCAC 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 123, 380
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 361
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 110, 392
BceAI ACGGC 2 cut(s) 43, 309
BciT130I CCWGG 3 cut(s) 254, 323, 472
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 15, 424
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 3 cut(s) 378, 450, 607
BfuAI ACCTGC 1 cut(s) 370
BglII AGATCT 1 cut(s) 523
BisI GCNGC 2 cut(s) 124, 381
BlsI GCNGC 2 cut(s) 125, 382
Bme1390I CCNGG 4 cut(s) 238, 254, 323, 472
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 4 cut(s) 238, 254, 323, 472
BmsI GCATC 5 cut(s) 135, 141, 178, 394, 542
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 424
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 611, 612
BseBI CCWGG 3 cut(s) 254, 323, 472
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 237, 611, 612
BseMII CTCAG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 2 cut(s) 110, 392
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 3 cut(s) 5, 185, 321
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 2 cut(s) 237, 279
BslI CCNNNNNNNGG 3 cut(s) 237, 611, 612
BsmAI GTCTC 2 cut(s) 15, 424
BsmBI CGTCTC 1 cut(s) 15
BsnI GGCC 3 cut(s) 5, 185, 321
Bso31I GGTCTC 1 cut(s) 424
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 2 cut(s) 256, 523
Bsp68I TCGCGA 1 cut(s) 411
BspACI CCGC 2 cut(s) 93, 139
BspANI GGCC 3 cut(s) 5, 185, 321
BspCNI CTCAG 1 cut(s) 439
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 2 cut(s) 382, 454
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 424
BssMI GATC 2 cut(s) 256, 523
Bst2UI CCWGG 3 cut(s) 254, 323, 472
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 3 cut(s) 143, 409, 477
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 411
BstKTI GATC 2 cut(s) 259, 526
BstMAI GTCTC 2 cut(s) 15, 424
BstMBI GATC 2 cut(s) 256, 523
BstMWI GCNNNNNNNGC 4 cut(s) 129, 138, 377, 386
BstNI CCWGG 3 cut(s) 254, 323, 472
BstSCI CCNGG 4 cut(s) 236, 252, 321, 470
BstSFI CTRYAG 3 cut(s) 378, 450, 607
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 110, 392
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 3 cut(s) 5, 185, 321
BtsCI GGATG 1 cut(s) 132
BtuMI TCGCGA 1 cut(s) 411
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 3 cut(s) 143, 409, 477
Csp6I GTAC 2 cut(s) 241, 601
CviAII CATG 5 cut(s) 7, 66, 386, 553, 574
CviJI RGCY 6 cut(s) 5, 110, 185, 321, 347, 383
CviKI_1 RGCY 6 cut(s) 5, 110, 185, 321, 347, 383
CviQI GTAC 2 cut(s) 241, 601
DdeI CTNAG 1 cut(s) 426
DpnI GATC 2 cut(s) 258, 525
DpnII GATC 2 cut(s) 256, 523
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 424
EcoRII CCWGG 3 cut(s) 252, 321, 470
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 5 cut(s) 10, 69, 389, 556, 577
FaiI YATR 7 cut(s) 8, 67, 228, 351, 387, 554, 575
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FatI CATG 5 cut(s) 6, 65, 385, 552, 573
FauI CCCGC 1 cut(s) 146
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 124, 381
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 124, 381
FspBI CTAG 1 cut(s) 354
GluI GCNGC 2 cut(s) 124, 381
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 3 cut(s) 5, 185, 321
HapII CCGG 2 cut(s) 237, 279
Hin1II CATG 5 cut(s) 10, 69, 389, 556, 577
HincII GTYRAC 1 cut(s) 422
HindII GTYRAC 1 cut(s) 422
HinfI GANTC 4 cut(s) 34, 115, 176, 272
HpaII CCGG 2 cut(s) 237, 279
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 3 cut(s) 250, 359, 422
Hpy188I TCNGA 3 cut(s) 39, 429, 592
Hpy188III TCNNGA 3 cut(s) 410, 466, 513
Hpy8I GTNNAC 3 cut(s) 250, 359, 422
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 6 cut(s) 69, 126, 359, 380, 452, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 138, 377, 386
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 5 cut(s) 10, 69, 389, 556, 577
Kzo9I GATC 2 cut(s) 256, 523
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 2 cut(s) 110, 392
LweI GCATC 5 cut(s) 135, 141, 178, 394, 542
MaeI CTAG 1 cut(s) 354
MalI GATC 2 cut(s) 258, 525
MboI GATC 2 cut(s) 256, 523
MboII GAAGA 3 cut(s) 185, 267, 559
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 1 cut(s) 361
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 165, 261, 302, 484
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 6 cut(s) 100, 107, 129, 159, 435, 605
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 213, 483, 504
MslI CAYNNNNRTG 1 cut(s) 354
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 237, 279
MspR9I CCNGG 4 cut(s) 238, 254, 323, 472
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 3 cut(s) 254, 323, 472
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 4 cut(s) 129, 138, 377, 386
NciI CCSGG 1 cut(s) 238
NdeII GATC 2 cut(s) 256, 523
NlaIII CATG 5 cut(s) 10, 69, 389, 556, 577
NlaIV GGNNCC 1 cut(s) 76
NruI TCGCGA 1 cut(s) 411
PaqCI CACCTGC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 3 cut(s) 34, 115, 176
PkrI GCNGC 2 cut(s) 125, 382
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp6I CCWGG 3 cut(s) 252, 321, 470
PspGI CCWGG 3 cut(s) 252, 321, 470
PspN4I GGNNCC 1 cut(s) 76
PstI CTGCAG 2 cut(s) 382, 454
PsuI RGATCY 1 cut(s) 523
RruI TCGCGA 1 cut(s) 411
RsaI GTAC 2 cut(s) 242, 602
RsaNI GTAC 2 cut(s) 241, 601
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 3 cut(s) 213, 483, 504
SatI GCNGC 2 cut(s) 124, 381
Sau3AI GATC 2 cut(s) 256, 523
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 4 cut(s) 238, 254, 323, 472
SduI GDGCHC 1 cut(s) 361
SetI ASST 6 cut(s) 255, 349, 364, 385, 427, 436
SfaNI GCATC 5 cut(s) 135, 141, 178, 394, 542
SfcI CTRYAG 3 cut(s) 378, 450, 607
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
SpeI ACTAGT 1 cut(s) 353
Sse9I AATT 4 cut(s) 165, 261, 302, 484
SsiI CCGC 2 cut(s) 93, 139
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 4 cut(s) 236, 252, 321, 470
TaqII GACCGA 1 cut(s) 235
TasI AATT 4 cut(s) 165, 261, 302, 484
TfiI GAWTC 3 cut(s) 34, 115, 176
Tru1I TTAA 3 cut(s) 213, 483, 504
Tru9I TTAA 3 cut(s) 213, 483, 504
TseI GCWGC 2 cut(s) 123, 380
TspDTI ATGAA 2 cut(s) 23, 590
VneI GTGCAC 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.