Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003134

Physical Location & Seq

Genomic Coordinates Forward (+)

5245031 .. 5247887

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATAAGAACGGCGAAGGCGGAGATGGAGAAATCCCAATCCAAAAACCTAACACCAATCCTATTCTCGGCGGAAGCGGAGGCGGAGGAGGGTCATCGACGAAGGGAAAGTCATGCAAGGGTTGCCTCTATTACTCCTCCACCCAGAAATCCAAATCCAAATACCCCACCTGCGTCGGCTTCTCCAAAACCCTCCAACAAGTTCCGAGCTACATTGTGGGAGAAACCGAATTGGAGGCGTCTAAAGCAGACCGGACGCTTGCCGATTTTAAATATGCCTGCGTTGGTTATTCGGTCTTCTTAGACAGAAAAGATACTCCTGCTGATCCACATAATAAACAAGCAGAATTGCCGTTTTGTGTTGGTCTCGAGGTACTGTATGACAAAAAACCTGCAGGCCATACGCATGCTCCGGCTCCTGCTCATAATAGAGAAGAAAACAGTCGGCCTATTCCTCAACCTCGAACCTACAAACCAGCACATTCAGCAGGAGATGAATACCTCCGCAGGTTTAAGAGGAATGCAGTTCTAGTAGCATCAGGTGTTGCTAGAAATGTGAATAGAGTGGGCAACTACGTGAAACAGAGTGTGGATGACATTCTGTACCCTTACCGTAGAAGGCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

22.85

Weight (kDa)

9.41

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51100 AT3G51100 AT3G51100
fragaria_vesca	FvH4_1g12190 FvH4_1g12190 FvH4_2g10310 FvH4_2g10310
malus_domestica	MD02G1135800.v1.1 MD10G1064100.v1.1 MD15G1249400.v1.1
prunus_persica	Prupe.7G164800_v2.0.a1 Prupe.8G085800_v2.0.a1 Prupe.8G085800_v2.0.a1
pyrus_communis	pycom02g10710 pycom10g04970 pycom15g21980
rosa_chinensis	RchiOBHm_Chr2g0099951 RchiOBHm_Chr6g0267511
rosa_laevigata	RLG00000013996 RLG00000016925
rosa_multiflora	Rmu_sc0012005.1_g000010 Rmu_sc0013563.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142710 Rroxscaffold_7G00200670
rosa_rugosa	Rorug02G0084200 Rorug06G0033100 Rorug06G0033100
rosa_samantha	Rh2AG133200 Rh2BG136800 Rh2CG138300 Rh2DG138700 Rh6AG154700 Rh6BG155400 Rh6CG150600 Rh6DG140600
rosa_wichuraiana	Rw2G010370 Rw6G013280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc36I	ACCTGC	3 cut(s)	179, 400, 498
AciI	CCGC	5 cut(s)	21, 72, 78, 84, 505
AclWI	GGATC	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	2 cut(s)	375, 605
AfiI	CCNNNNNNNGG	1 cut(s)	68
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	3 cut(s)	397, 446, 620
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspS9I	GGNCC	1 cut(s)	621
AvaI	CYCGRG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	289
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	28, 337
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	530, 549
BfmI	CTRYAG	1 cut(s)	393
BfuAI	ACCTGC	3 cut(s)	179, 400, 498
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	1 cut(s)	417
BmsI	GCATC	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	289
BsaAI	YACGTR	1 cut(s)	577
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	102, 127
BshFI	GGCC	3 cut(s)	399, 448, 622
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	253, 413
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	3 cut(s)	399, 448, 622
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	5 cut(s)	21, 72, 78, 84, 505
BspANI	GGCC	3 cut(s)	399, 448, 622
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	3 cut(s)	179, 400, 498
BspPI	GGATC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	371
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	378, 443, 614
BstACI	GRCGYC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	4 cut(s)	261, 280, 397, 408
BstDEI	CTNAG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	598
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 245, 485
BstNSI	RCATGY	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	393
BstV2I	GAAGAC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	399, 448, 622
BtsCI	GGATG	1 cut(s)	598
BveI	ACCTGC	3 cut(s)	179, 400, 498
Cac8I	GCNNGC	4 cut(s)	261, 280, 397, 408
Cfr13I	GGNCC	1 cut(s)	621
CseI	GACGC	3 cut(s)	163, 228, 265
Csp6I	GTAC	2 cut(s)	374, 604
CviAII	CATG	2 cut(s)	114, 407
CviJI	RGCY	6 cut(s)	180, 210, 399, 416, 448, 622
CviKI_1	RGCY	6 cut(s)	180, 210, 399, 416, 448, 622
CviQI	GTAC	2 cut(s)	374, 604
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DraI	TTTAAA	1 cut(s)	271
EciI	GGCGGA	3 cut(s)	36, 87, 99
Eco31I	GGTCTC	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	368
FaeI	CATG	2 cut(s)	117, 410
FaiI	YATR	7 cut(s)	115, 276, 333, 381, 402, 408, 426
FatI	CATG	2 cut(s)	113, 406
FokI	GGATG	1 cut(s)	605
FspBI	CTAG	2 cut(s)	530, 549
HaeIII	GGCC	3 cut(s)	399, 448, 622
HapII	CCGG	2 cut(s)	253, 413
HgaI	GACGC	3 cut(s)	163, 228, 265
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	117, 410
HpaII	CCGG	2 cut(s)	253, 413
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	368
Hpy99I	CGWCG	2 cut(s)	103, 179
HpyAV	CCTTC	3 cut(s)	11, 97, 612
HpyCH4III	ACNGT	3 cut(s)	378, 443, 614
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	3 cut(s)	117, 395, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 245, 485
HpyF3I	CTNAG	1 cut(s)	301
HpySE526I	ACGT	1 cut(s)	576
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	117, 410
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	2 cut(s)	415, 421
LweI	GCATC	1 cut(s)	545
MaeI	CTAG	2 cut(s)	530, 549
MaeII	ACGT	1 cut(s)	576
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	289, 446
MluCI	AATT	2 cut(s)	230, 347
MmeI	TCCRAC	1 cut(s)	220
MseI	TTAA	2 cut(s)	270, 513
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	2 cut(s)	253, 413
Mva1269I	GAATGC	1 cut(s)	526
MwoI	GCNNNNNNNGC	3 cut(s)	123, 245, 485
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	117, 410
NlaIV	GGNNCC	1 cut(s)	417
NmeAIII	GCCGAG	1 cut(s)	48
NspI	RCATGY	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	410
PaeR7I	CTCGAG	1 cut(s)	368
PaqCI	CACCTGC	1 cut(s)	179
PctI	GAATGC	1 cut(s)	526
Ppu21I	YACGTR	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	621
PstI	CTGCAG	1 cut(s)	397
RsaI	GTAC	2 cut(s)	375, 605
RsaNI	GTAC	2 cut(s)	374, 604
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	270, 513
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	621
SbfI	CCTGCAGG	1 cut(s)	397
SdaI	CCTGCAGG	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	545
SfcI	CTRYAG	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SphI	GCATGC	1 cut(s)	410
Sse8387I	CCTGCAGG	1 cut(s)	397
Sse9I	AATT	2 cut(s)	230, 347
SsiI	CCGC	5 cut(s)	21, 72, 78, 84, 505
SspMI	CTAG	2 cut(s)	530, 549
TaaI	ACNGT	3 cut(s)	378, 443, 614
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	98, 369, 463
TaqII	GACCGA	1 cut(s)	283
TasI	AATT	2 cut(s)	230, 347
Tru1I	TTAA	2 cut(s)	270, 513
Tru9I	TTAA	2 cut(s)	270, 513
TspDTI	ATGAA	1 cut(s)	510
XceI	RCATGY	1 cut(s)	410
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	2 cut(s)	530, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.