Rh6AG154700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003134
Physical Location & Seq
Reverse (-)
24125291 .. 24130827
5537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG154700.1

Sequence Viewer

Length: 423 bp
ATGGATAAGGAACGCGAAGACGGAGACGAACGATTTAAAAACCAAAACCAAAACCCTAACCCTAATCAGAGCAGAGGTTCAACAAGGGGAAGATCCTGCAAGGGTTGCCTCTATTACTCTTCTCTACACAAATCCAAATCCAAGTACCCCACCTGCGTTGGCTTCTACAGAACTCTCAATCAAGTACCCAGCTACATTGTGGGAGAAACGGAGTTGGAAGCTTCAAAAGCCGATCGCAGCCTTACGGATTTTAAGTACGGGTGTGTCGGTTACTCGGTGTTCTTGGACAGGAAAGATTCAAGTGATCCACATAAAAAACAGGCGGAATTGCCATTTTGTGTTGGTCTTGAGATATTATATGACAAAAGACCCGCAGACCAGGCTCATGCTCCTACTCCTGCTCATAAAAGTGGAGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.76

Weight (kDa)

8.77

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8204 PF26631 30 - 119 5e-42 Domain of unknown function (DUF8204)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 161
AccII CGCG 1 cut(s) 15
AciI CCGC 2 cut(s) 323, 372
AclWI GGATC 2 cut(s) 87, 299
AfaI GTAC 3 cut(s) 146, 186, 257
AgsI TTSAA 3 cut(s) 81, 225, 300
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 2 cut(s) 192, 221
AluI AGCT 2 cut(s) 192, 221
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 2 cut(s) 87, 299
ApeKI GCWGC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 380
BpiI GAAGAC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 368
BseBI CCWGG 1 cut(s) 380
BseXI GCAGC 1 cut(s) 249
BseYI CCCAGC 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 235
BsiEI CGRYCG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 92, 232, 304
BspACI CCGC 2 cut(s) 323, 372
BspFNI CGCG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 2 cut(s) 87, 299
BssMI GATC 3 cut(s) 92, 232, 304
Bst2UI CCWGG 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 105
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 3 cut(s) 95, 235, 307
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 3 cut(s) 92, 232, 304
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 3 cut(s) 105, 227, 380
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 166
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BveI ACCTGC 1 cut(s) 161
Csp6I GTAC 3 cut(s) 145, 185, 256
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 1 cut(s) 386
CviJI RGCY 6 cut(s) 162, 192, 221, 230, 240, 383
CviKI_1 RGCY 6 cut(s) 162, 192, 221, 230, 240, 383
CviQI GTAC 3 cut(s) 145, 185, 256
DpnI GATC 3 cut(s) 94, 234, 306
DpnII GATC 3 cut(s) 92, 232, 304
DraI TTTAAA 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 1 cut(s) 389
FaiI YATR 6 cut(s) 312, 358, 360, 387, 405, 419
FatI CATG 1 cut(s) 385
FauI CCCGC 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 238
GsaI CCCAGC 1 cut(s) 192
Hin1II CATG 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 347
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 227, 380
Hsp92II CATG 1 cut(s) 389
Kzo9I GATC 3 cut(s) 92, 232, 304
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 8 cut(s) 109, 166, 202, 274, 305, 365, 392, 411
Lsp1109I GCAGC 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 94, 234, 306
MboI GATC 3 cut(s) 92, 232, 304
MboII GAAGA 3 cut(s) 29, 102, 111
MflI RGATCY 1 cut(s) 92
MluCI AATT 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 3 cut(s) 68, 119, 407
MseI TTAA 2 cut(s) 36, 252
MslI CAYNNNNRTG 1 cut(s) 408
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 3 cut(s) 105, 227, 380
NdeII GATC 3 cut(s) 92, 232, 304
NlaIII CATG 1 cut(s) 389
PaqCI CACCTGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 239
Ple19I CGATCG 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 378
PspFI CCCAGC 1 cut(s) 188
PspGI CCWGG 1 cut(s) 378
PsuI RGATCY 1 cut(s) 92
PvuI CGATCG 1 cut(s) 235
RsaI GTAC 3 cut(s) 146, 186, 257
RsaNI GTAC 3 cut(s) 145, 185, 256
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 2 cut(s) 36, 252
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 3 cut(s) 92, 232, 304
ScrFI CCNGG 1 cut(s) 380
SetI ASST 5 cut(s) 79, 155, 194, 223, 418
SfcI CTRYAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 1 cut(s) 326
SsiI CCGC 2 cut(s) 323, 372
StyD4I CCNGG 1 cut(s) 378
TasI AATT 1 cut(s) 326
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 36, 252
Tru9I TTAA 2 cut(s) 36, 252
TseI GCWGC 1 cut(s) 237
TspGWI ACGGA 3 cut(s) 36, 224, 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.