Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012005.1

Orthogroup ID

OG0003134

Physical Location & Seq

Genomic Coordinates Forward (+)

43706 .. 48607

Gene Structure 4902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012005.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggataaggaacgcgaagacggagacgaacgatttcaaaatcaaaaccaaaaccaaaaccaaaaccctaaccctaatcagagcagaggttcaacaaggggaagatcctgcaagggttgcctctattactcttctctacacaaatccaaatccaagtaccccacctgcgttggcttctacagaactctcaatcaagtacccagctacattgtgggagaaacggagttggaagcttcaaaagccgatcgcagccttacggattttaagtacgggtgcgtaggttactcggttttcttagacaggaaagattcaagtgatccacataaaaaacaggcggaattgccattttgcgttggtcttgagatattatatgacaaaagacccgcagaccaggctcatgctcctactcctgctcataaaagtggagacaatgttcgacctctacctcaacctcgaagctataaaccacattcaactggagatgagtacctgaccaggtttaagaggaacgctggcctagtggcatcaggtgttgctaggaatttaaacagagtaggcaaccatataaaacagagcgtggataacatcttattcggaaggtccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.78

Weight (kDa)

9.41

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51100 AT3G51100 AT3G51100
fragaria_vesca	FvH4_1g12190 FvH4_1g12190 FvH4_2g10310 FvH4_2g10310
malus_domestica	MD02G1135800.v1.1 MD10G1064100.v1.1 MD15G1249400.v1.1
prunus_persica	Prupe.7G164800_v2.0.a1 Prupe.8G085800_v2.0.a1 Prupe.8G085800_v2.0.a1
pyrus_communis	pycom02g10710 pycom10g04970 pycom15g21980
rosa_chinensis	RchiOBHm_Chr2g0099951 RchiOBHm_Chr6g0267511
rosa_laevigata	RLG00000013996 RLG00000016925
rosa_multiflora	Rmu_sc0012005.1_g000010 Rmu_sc0013563.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142710 Rroxscaffold_7G00200670
rosa_rugosa	Rorug02G0084200 Rorug06G0033100 Rorug06G0033100
rosa_samantha	Rh2AG133200 Rh2BG136800 Rh2CG138300 Rh2DG138700 Rh6AG154700 Rh6BG155400 Rh6CG150600 Rh6DG140600
rosa_wichuraiana	Rw2G010370 Rw6G013280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	173
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	335, 384
AclWI	GGATC	2 cut(s)	99, 311
AcsI	RAATTY	1 cut(s)	541
AfaI	GTAC	4 cut(s)	158, 198, 269, 488
AgsI	TTSAA	5 cut(s)	38, 93, 237, 312, 474
AjnI	CCWGG	2 cut(s)	390, 494
AloI	GAACNNNNNNTCC	2 cut(s)	417, 449
AluBI	AGCT	3 cut(s)	204, 233, 459
AluI	AGCT	3 cut(s)	204, 233, 459
Alw26I	GTCTC	2 cut(s)	18, 420
AlwI	GGATC	2 cut(s)	99, 311
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	541
Asp700I	GAANNNNTTC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	600
AvaII	GGWCC	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	392, 496
BcoDI	GTCTC	2 cut(s)	18, 420
BfaI	CTAG	2 cut(s)	518, 537
BfmI	CTRYAG	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	392, 496
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	600
BmrFI	CCNGG	2 cut(s)	392, 496
BmsI	GCATC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	2 cut(s)	392, 496
BseNI	ACTGG	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	516
BsiEI	CGRYCG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	18, 420
BsmBI	CGTCTC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	104, 244, 316
BspACI	CCGC	2 cut(s)	335, 384
BspANI	GGCC	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	99, 311
BsrI	ACTGG	1 cut(s)	481
BssMI	GATC	3 cut(s)	104, 244, 316
Bst2UI	CCWGG	2 cut(s)	392, 496
Bst6I	CTCTTC	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	3 cut(s)	107, 247, 319
BstMAI	GTCTC	2 cut(s)	18, 420
BstMBI	GATC	3 cut(s)	104, 244, 316
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 239, 392
BstNI	CCWGG	2 cut(s)	392, 496
BstSCI	CCNGG	2 cut(s)	390, 494
BstSFI	CTRYAG	1 cut(s)	178
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	600
CsiI	ACCWGGT	1 cut(s)	494
Csp6I	GTAC	4 cut(s)	157, 197, 268, 487
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	1 cut(s)	398
CviJI	RGCY	8 cut(s)	174, 204, 233, 242, 252, 395, 459, 516
CviKI_1	RGCY	8 cut(s)	174, 204, 233, 242, 252, 395, 459, 516
CviQI	GTAC	4 cut(s)	157, 197, 268, 487
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	3 cut(s)	106, 246, 318
DpnII	GATC	3 cut(s)	104, 244, 316
DraI	TTTAAA	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	390, 494
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	1 cut(s)	401
FaiI	YATR	8 cut(s)	324, 370, 372, 399, 417, 462, 564, 566
FatI	CATG	1 cut(s)	397
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	2 cut(s)	518, 537
GluI	GCNGC	1 cut(s)	250
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	516
Hin1II	CATG	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	81, 596
Hpy188III	TCNNGA	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	591
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 239, 392
HpyF3I	CTNAG	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	401
Kzo9I	GATC	3 cut(s)	104, 244, 316
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	533
MabI	ACCWGGT	1 cut(s)	494
MaeI	CTAG	2 cut(s)	518, 537
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	3 cut(s)	106, 246, 318
MboI	GATC	3 cut(s)	104, 244, 316
MboII	GAAGA	3 cut(s)	29, 114, 123
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	2 cut(s)	338, 541
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	6 cut(s)	80, 131, 450, 456, 462, 498
MroXI	GAANNNNTTC	1 cut(s)	33
MseI	TTAA	3 cut(s)	264, 501, 545
MslI	CAYNNNNRTG	1 cut(s)	420
MspR9I	CCNGG	2 cut(s)	392, 496
MvaI	CCWGG	2 cut(s)	392, 496
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	117, 239, 392
NdeII	GATC	3 cut(s)	104, 244, 316
NlaIII	CATG	1 cut(s)	401
PaqCI	CACCTGC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	251
Ple19I	CGATCG	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	390, 494
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	2 cut(s)	390, 494
PspPI	GGNCC	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	104
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	4 cut(s)	158, 198, 269, 488
RsaNI	GTAC	4 cut(s)	157, 197, 268, 487
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	3 cut(s)	264, 501, 545
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	3 cut(s)	104, 244, 316
Sau96I	GGNCC	1 cut(s)	600
ScrFI	CCNGG	2 cut(s)	392, 496
SexAI	ACCWGGT	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	533
SfcI	CTRYAG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	338, 541
SsiI	CCGC	2 cut(s)	335, 384
SspMI	CTAG	2 cut(s)	518, 537
StyD4I	CCNGG	2 cut(s)	390, 494
TaqI	TCGA	2 cut(s)	436, 454
TasI	AATT	2 cut(s)	338, 541
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	3 cut(s)	264, 501, 545
Tru9I	TTAA	3 cut(s)	264, 501, 545
TseI	GCWGC	1 cut(s)	249
TspGWI	ACGGA	3 cut(s)	36, 236, 272
VpaK11BI	GGWCC	1 cut(s)	600
XapI	RAATTY	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	2 cut(s)	518, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.