Rw6G013280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003134
Physical Location & Seq
Reverse (-)
24513363 .. 24517872
4510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G013280.1

Sequence Viewer

Length: 687 bp
ATGGATAAGGAACGCGAAGACGGAGACGAACGATTTCAAAACCAAAACCTAACCCTAACCCTAATCAGAGCAGAGGTTCAACAAGGGGAAGATCCTGCAAGGGTTGCCTCTATTACTCTTCTCTACACAAATCCAAATCCAAGTACCCCACCTGCGTTGGCTTCTACAGAACTCTCAATCAAGACTAATGCACTATCTGCAACTTTCATGGGATTAATATATGAAAGATGGAAACTTGTATTGATGCTTGTGCCCTCTACTGCTACAACATTCATACCCAGCTACATTGTGGGAGAAACGGAGTTGGAAGCTTCAAAAGCCGATCGCAGCCTTACGGATTTTAAGTACGGGTGTGTTGGTTACTCGGTGTTCTTGGACAGGAAAGATTCAAGTGATCCACATAAAAAACAGGCGGAATTGCCATTTTGTGTTGGTCTTGAGATATTATATGACAAAAGACCCGCAGACCAGGCTCATGCTCCTACTCCTGCTCATAAAAGTGGAGACAATGTTCGACCTCTACCTCAACCTCGAAGCTATAAACCACATTCAACCGGAGATGAGTACCTGACCAGGTTTAAGAGGAACGCTGGCCTAGTAGCATCAGGTGTTGCTAGGAATTTAAACAGAGTAGGCAACCATATAAAACAGAGCGTGGATAACATCTTATTCGGAAGGTCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.35

Weight (kDa)

8.45

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8204 PF26631 89 - 149 1.2e-22 Domain of unknown function (DUF8204)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 160
AccII CGCG 1 cut(s) 15
AciI CCGC 2 cut(s) 413, 462
AclWI GGATC 2 cut(s) 86, 389
AcsI RAATTY 1 cut(s) 619
AfaI GTAC 3 cut(s) 145, 347, 566
AgsI TTSAA 5 cut(s) 38, 80, 315, 390, 552
AjnI CCWGG 2 cut(s) 468, 572
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 3 cut(s) 282, 311, 537
AluI AGCT 3 cut(s) 282, 311, 537
Alw26I GTCTC 2 cut(s) 18, 498
AlwI GGATC 2 cut(s) 86, 389
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 1 cut(s) 619
AseI ATTAAT 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 678
AvaII GGWCC 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 339
BccI CCATC 1 cut(s) 222
BciT130I CCWGG 2 cut(s) 470, 574
BcoDI GTCTC 2 cut(s) 18, 498
BfaI CTAG 2 cut(s) 596, 615
BfmI CTRYAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 470, 574
Bme18I GGWCC 1 cut(s) 678
BmgT120I GGNCC 1 cut(s) 678
BmrFI CCNGG 2 cut(s) 470, 574
BmsI GCATC 2 cut(s) 234, 611
BpiI GAAGAC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 458
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
BseBI CCWGG 2 cut(s) 470, 574
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 1 cut(s) 339
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 1 cut(s) 594
BsiEI CGRYCG 1 cut(s) 325
BsiSI CCGG 1 cut(s) 555
BsmAI GTCTC 2 cut(s) 18, 498
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 3 cut(s) 91, 322, 394
BspACI CCGC 2 cut(s) 413, 462
BspANI GGCC 1 cut(s) 594
BspFNI CGCG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 86, 389
BssMI GATC 3 cut(s) 91, 322, 394
Bst2UI CCWGG 2 cut(s) 470, 574
Bst6I CTCTTC 1 cut(s) 123
BstAPI GCANNNNNTGC 2 cut(s) 104, 197
BstC8I GCNNGC 1 cut(s) 592
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 3 cut(s) 94, 325, 397
BstMAI GTCTC 2 cut(s) 18, 498
BstMBI GATC 3 cut(s) 91, 322, 394
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 4 cut(s) 104, 197, 317, 470
BstNI CCWGG 2 cut(s) 470, 574
BstSCI CCNGG 2 cut(s) 468, 572
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 339
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 594
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 678
CsiI ACCWGGT 1 cut(s) 572
Csp6I GTAC 3 cut(s) 144, 346, 565
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 2 cut(s) 208, 476
CviJI RGCY 8 cut(s) 161, 282, 311, 320, 330, 473, 537, 594
CviKI_1 RGCY 8 cut(s) 161, 282, 311, 320, 330, 473, 537, 594
CviQI GTAC 3 cut(s) 144, 346, 565
DpnI GATC 3 cut(s) 93, 324, 396
DpnII GATC 3 cut(s) 91, 322, 394
DraI TTTAAA 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 468, 572
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 2 cut(s) 211, 479
FatI CATG 2 cut(s) 207, 475
FauI CCCGC 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 2 cut(s) 596, 615
GluI GCNGC 1 cut(s) 328
GsaI CCCAGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 594
HapII CCGG 1 cut(s) 555
Hin1II CATG 2 cut(s) 211, 479
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 1 cut(s) 386
HpaII CCGG 1 cut(s) 555
Hpy188I TCNGA 2 cut(s) 68, 674
Hpy188III TCNNGA 2 cut(s) 181, 437
HpyAV CCTTC 1 cut(s) 669
HpyCH4V TGCA 3 cut(s) 98, 191, 200
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 197, 317, 470
Hsp92II CATG 2 cut(s) 211, 479
Kzo9I GATC 3 cut(s) 91, 322, 394
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 1 cut(s) 339
LweI GCATC 2 cut(s) 234, 611
MabI ACCWGGT 1 cut(s) 572
MaeI CTAG 2 cut(s) 596, 615
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 93, 324, 396
MboI GATC 3 cut(s) 91, 322, 394
MboII GAAGA 3 cut(s) 29, 101, 110
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 416, 619
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 7 cut(s) 67, 118, 265, 528, 534, 540, 576
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 4 cut(s) 215, 342, 579, 623
MslI CAYNNNNRTG 1 cut(s) 498
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 2 cut(s) 470, 574
MvaI CCWGG 2 cut(s) 470, 574
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 4 cut(s) 104, 197, 317, 470
NdeII GATC 3 cut(s) 91, 322, 394
NlaIII CATG 2 cut(s) 211, 479
PaqCI CACCTGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 1 cut(s) 329
Ple19I CGATCG 1 cut(s) 325
PshBI ATTAAT 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 468, 572
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 2 cut(s) 468, 572
PspPI GGNCC 1 cut(s) 678
PsuI RGATCY 1 cut(s) 91
PvuI CGATCG 1 cut(s) 325
RsaI GTAC 3 cut(s) 145, 347, 566
RsaNI GTAC 3 cut(s) 144, 346, 565
RseI CAYNNNNRTG 1 cut(s) 498
SaqAI TTAA 4 cut(s) 215, 342, 579, 623
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 3 cut(s) 91, 322, 394
Sau96I GGNCC 1 cut(s) 678
ScrFI CCNGG 2 cut(s) 470, 574
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 572
SfaNI GCATC 2 cut(s) 234, 611
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 2 cut(s) 416, 619
SsiI CCGC 2 cut(s) 413, 462
SspMI CTAG 2 cut(s) 596, 615
StyD4I CCNGG 2 cut(s) 468, 572
TaqI TCGA 2 cut(s) 514, 532
TasI AATT 2 cut(s) 416, 619
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 4 cut(s) 215, 342, 579, 623
Tru9I TTAA 4 cut(s) 215, 342, 579, 623
TseI GCWGC 1 cut(s) 327
TspDTI ATGAA 3 cut(s) 196, 237, 262
TspGWI ACGGA 3 cut(s) 36, 314, 350
VpaK11BI GGWCC 1 cut(s) 678
VspI ATTAAT 1 cut(s) 215
XapI RAATTY 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 2 cut(s) 596, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.