Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003134

Physical Location & Seq

Genomic Coordinates Forward (+)

11891619 .. 11894982

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G085800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGATAAGGAAGGCGAAGACGCAGATGGAGGAGGTATCAAAATTCCAAACCCTAACCCTAATCTCAGCAATGGCTCAGCGAAGGGAAAGTCATGCAAGGGTTGCCTCTATTACTCATCCACACAGAAATCCAAATCCAAATATCCCACCTGCGTTGGCCTCTCCAAAACCCTCCAACAAGTGCCCAGCTACATTGTGGGAGAGACTGAGTTAGAGGCTTCTAAAGCGGACCGCAGCCTTACAGATTTCAAGTATGCTTGTGTAGGTTACTCGGTGTTCTTAGACAGAAAAGATTCTTCTAGTGATCAGCAGAATAAACAAGCGGAATTGCCGTTTTGTGTTGGTCTTGAGGTATTGTATGACAAAAAACCTGCAGGCCATGCACAGGCTGATGCTCCTGCTCATAAAATTGAAGAAAATGTTCGGCCGATTCCTCAACCCCAAAGCTACAGACCACCACATTCAACAGGAGATGAATATCTCAACAGGTTTAAGAGGAATGCAATACTAGTAGCATCAGGTGTTGCTAAGAATGTGAATAGAGTGGGAAGCTATATCAAACAGAGTGTGGATGACATTCTATACCCTTACCGTAGAAGGCCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.28

Weight (kDa)

9.06

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51100 AT3G51100 AT3G51100
fragaria_vesca	FvH4_1g12190 FvH4_1g12190 FvH4_2g10310 FvH4_2g10310
malus_domestica	MD02G1135800.v1.1 MD10G1064100.v1.1 MD15G1249400.v1.1
prunus_persica	Prupe.7G164800_v2.0.a1 Prupe.8G085800_v2.0.a1 Prupe.8G085800_v2.0.a1
pyrus_communis	pycom02g10710 pycom10g04970 pycom15g21980
rosa_chinensis	RchiOBHm_Chr2g0099951 RchiOBHm_Chr6g0267511
rosa_laevigata	RLG00000013996 RLG00000016925
rosa_multiflora	Rmu_sc0012005.1_g000010 Rmu_sc0013563.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142710 Rroxscaffold_7G00200670
rosa_rugosa	Rorug02G0084200 Rorug06G0033100 Rorug06G0033100
rosa_samantha	Rh2AG133200 Rh2BG136800 Rh2CG138300 Rh2DG138700 Rh6AG154700 Rh6BG155400 Rh6CG150600 Rh6DG140600
rosa_wichuraiana	Rw2G010370 Rw6G013280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	2 cut(s)	158, 379
AciI	CCGC	3 cut(s)	227, 232, 323
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	250, 413, 465
AhlI	ACTAGT	1 cut(s)	508
AluBI	AGCT	3 cut(s)	189, 447, 552
AluI	AGCT	3 cut(s)	189, 447, 552
Alw26I	GTCTC	1 cut(s)	197
AoxI	GGCC	4 cut(s)	157, 376, 425, 599
ApeKI	GCWGC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	2 cut(s)	292, 420
AspS9I	GGNCC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	508
BfaI	CTAG	2 cut(s)	300, 509
BfmI	CTRYAG	2 cut(s)	372, 448
BfuAI	ACCTGC	2 cut(s)	158, 379
BisI	GCNGC	1 cut(s)	235
BlpI	GCTNAGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmsI	GCATC	2 cut(s)	382, 524
BpiI	GAAGAC	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	477
BseGI	GGATG	2 cut(s)	116, 577
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	3 cut(s)	79, 90, 198
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	186
BseX3I	CGGCCG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	428
BshFI	GGCC	4 cut(s)	159, 378, 427, 601
BsiEI	CGRYCG	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	4 cut(s)	159, 378, 427, 601
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	304
Bsp1720I	GCTNAGC	1 cut(s)	76
BspACI	CCGC	3 cut(s)	227, 232, 323
BspANI	GGCC	4 cut(s)	159, 378, 427, 601
BspCNI	CTCAG	3 cut(s)	78, 89, 199
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	2 cut(s)	158, 379
BsrDI	GCAATG	1 cut(s)	76
BssMI	GATC	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	593
BstAPI	GCANNNNNTGC	2 cut(s)	102, 380
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	6 cut(s)	65, 76, 207, 280, 528, 603
BstF5I	GGATG	2 cut(s)	116, 577
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	304
BstMCI	CGRYCG	1 cut(s)	428
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 224, 380
BstSFI	CTRYAG	2 cut(s)	372, 448
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	24
BstZI	CGGCCG	1 cut(s)	425
BsuRI	GGCC	4 cut(s)	159, 378, 427, 601
BtsCI	GGATG	2 cut(s)	116, 577
BveI	ACCTGC	2 cut(s)	158, 379
Cac8I	GCNNGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	229
CpoI	CGGWCCG	1 cut(s)	229
CseI	GACGC	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CspI	CGGWCCG	1 cut(s)	229
CviAII	CATG	2 cut(s)	93, 380
DdeI	CTNAG	6 cut(s)	65, 76, 207, 280, 528, 603
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	425
EagI	CGGCCG	1 cut(s)	425
EclXI	CGGCCG	1 cut(s)	425
Eco147I	AGGCCT	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	425
FaeI	CATG	2 cut(s)	96, 383
FaiI	YATR	7 cut(s)	94, 255, 360, 381, 405, 555, 583
FatI	CATG	2 cut(s)	92, 379
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	2 cut(s)	103, 584
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	2 cut(s)	300, 509
GluI	GCNGC	1 cut(s)	235
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	159, 378, 427, 601
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	96, 383
HinfI	GANTC	2 cut(s)	293, 430
Hpy188III	TCNNGA	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	5, 76, 591
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	4 cut(s)	96, 374, 383, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 224, 380
HpyF3I	CTNAG	6 cut(s)	65, 76, 207, 280, 528, 603
Hsp92II	CATG	2 cut(s)	96, 383
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	9 cut(s)	163, 199, 360, 371, 384, 411, 453, 472, 504
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	2 cut(s)	382, 524
MaeI	CTAG	2 cut(s)	300, 509
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	3 cut(s)	29, 288, 425
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	3 cut(s)	42, 326, 408
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	9 cut(s)	23, 26, 116, 170, 182, 208, 343, 444, 489
MroXI	GAANNNNTTC	2 cut(s)	292, 420
MseI	TTAA	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	505
MwoI	GCNNNNNNNGC	3 cut(s)	102, 224, 380
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	96, 383
PaqCI	CACCTGC	1 cut(s)	158
PceI	AGGCCT	1 cut(s)	601
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	2 cut(s)	292, 420
PfeI	GAWTC	2 cut(s)	293, 430
PkrI	GCNGC	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	376
Rsr2I	CGGWCCG	1 cut(s)	229
RsrII	CGGWCCG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	229
SbfI	CCTGCAGG	1 cut(s)	376
SdaI	CCTGCAGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	382, 524
SfcI	CTRYAG	2 cut(s)	372, 448
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	508
Sse8387I	CCTGCAGG	1 cut(s)	376
Sse9I	AATT	3 cut(s)	42, 326, 408
SseBI	AGGCCT	1 cut(s)	601
SsiI	CCGC	3 cut(s)	227, 232, 323
SspMI	CTAG	2 cut(s)	300, 509
StuI	AGGCCT	1 cut(s)	601
TaaI	ACNGT	1 cut(s)	593
TasI	AATT	3 cut(s)	42, 326, 408
TfiI	GAWTC	2 cut(s)	293, 430
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseI	GCWGC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	42
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmnI	GAANNNNTTC	2 cut(s)	292, 420
XspI	CTAG	2 cut(s)	300, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.