Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

19206768 .. 19208648

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATGCATAATTCAACCGAAGAATCGGAATGGGAGGTGAGACCTGGTGGTATGCTCGTCCAACGAAGAGACGACGCCGCTTCCTCCGACCACAAACCTCTCCAGGATCCCGACTCTGCTTCCGCCGCTTTTGCTCAAACCATCAGAATCACTGTTTCTCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGGGGATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAATTGAAGATCTTGTTCAGAGGAGTTGAGAGAGATGATGCTGAACAATTGCAAGCTGCTGGTGTTAAGGATGCGTCTAAGCTTGTTGTTGTTGTTGAGGATACGAATAAGAGAGTGGAACAACAGCCTCCTGTGGTAACTAAAGAGATGGAAAAAGCTATTGCTGCTGTTAACGCGGTTACAGGAGAGGTCGATAAGCTCTCGGATAGAGTTGTTGCTTTAGAAGTTGCTGTGAATGGAGGGACGCAAGTTGCGGTGCGGGAGTTTGACATGGCTGCAGAGCTTCTTATGAGGCAGCTGCTCAAATTGGATGGCATTGAGGCTGAAGGGGACGCTAAAGTACAGCGTAAGGCTGAGGTACGTAGAATCCAAAACTTGCAGGAGGCTGTGGATAAGTTGAAGGCAAGATGTTCAAATCCGTTTGTGGATCAGAGCAAAGCTGCAGCTGTAAGCACTGAGTGGGAATCGTTCGGAAACGGTGTCGGAAGCTTGAACCCTCCTCCGCCAGCTTCGCCTTCGGCCAATGTAACTCAAGATTGGGAGAAATTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

269

Amino Acids

29.21

Weight (kDa)

5.2

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	50 - 118	2.3e-07	Ubiquitin family
BAG	PF02179	142 - 218	1.3e-16	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	431
AciI	CCGC	7 cut(s)	78, 123, 126, 431, 509, 514, 758
AclWI	GGATC	3 cut(s)	101, 114, 690
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	1 cut(s)	800
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	75
AdeI	CACNNNGTG	1 cut(s)	714
AfaI	GTAC	2 cut(s)	597, 615
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	15, 262, 655, 669, 748
AjnI	CCWGG	2 cut(s)	43, 102
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
Alw26I	GTCTC	2 cut(s)	34, 63
AlwI	GGATC	3 cut(s)	101, 114, 690
AoxI	GGCC	1 cut(s)	774
ApeKI	GCWGC	7 cut(s)	311, 419, 530, 550, 553, 695, 698
ApoI	RAATTY	1 cut(s)	800
AsuHPI	GGTGA	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	106
BbvCI	CCTCAGC	1 cut(s)	609
BbvI	GCAGC	7 cut(s)	298, 406, 517, 540, 562, 682, 710
BccI	CCATC	3 cut(s)	149, 397, 560
BciT130I	CCWGG	2 cut(s)	45, 104
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	34, 63
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	2 cut(s)	531, 696
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	9 cut(s)	78, 126, 312, 420, 531, 551, 554, 696, 699
BlsI	GCNGC	9 cut(s)	79, 127, 313, 421, 532, 552, 555, 697, 700
Bme1390I	CCNGG	2 cut(s)	45, 104
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	45, 104
BmsI	GCATC	2 cut(s)	283, 316
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	771
BsaAI	YACGTR	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	45, 104
BseGI	GGATG	3 cut(s)	217, 331, 571
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	600, 702
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	2 cut(s)	291, 744
BseXI	GCAGC	7 cut(s)	298, 406, 517, 540, 562, 682, 710
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	776
BslFI	GGGAC	2 cut(s)	511, 599
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	34, 63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	2 cut(s)	511, 599
BsnI	GGCC	1 cut(s)	776
Bso31I	GGTCTC	1 cut(s)	34
Bsp143I	GATC	4 cut(s)	106, 178, 264, 682
BspACI	CCGC	7 cut(s)	78, 123, 126, 431, 509, 514, 758
BspANI	GGCC	1 cut(s)	776
BspCNI	CTCAG	2 cut(s)	601, 703
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	2 cut(s)	535, 700
BspPI	GGATC	3 cut(s)	101, 114, 690
BspTNI	GGTCTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	106, 178, 264, 682
BssNI	GRCGYC	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	45, 104
Bst4CI	ACNGT	2 cut(s)	154, 734
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	309, 762
BstDEI	CTNAG	3 cut(s)	333, 609, 711
BstF5I	GGATG	3 cut(s)	217, 331, 571
BstFNI	CGCG	1 cut(s)	431
BstKTI	GATC	4 cut(s)	109, 181, 267, 685
BstMAI	GTCTC	2 cut(s)	34, 63
BstMBI	GATC	4 cut(s)	106, 178, 264, 682
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 131, 419, 428, 766
BstNI	CCWGG	2 cut(s)	45, 104
BstSCI	CCNGG	2 cut(s)	43, 102
BstSFI	CTRYAG	2 cut(s)	531, 696
BstSNI	TACGTA	1 cut(s)	617
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	7 cut(s)	298, 406, 517, 540, 562, 682, 710
BstX2I	RGATCY	2 cut(s)	106, 264
BstYI	RGATCY	2 cut(s)	106, 264
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	776
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	217, 331, 571
BtsIMutI	CAGTG	2 cut(s)	150, 708
Cac8I	GCNNGC	2 cut(s)	309, 762
CseI	GACGC	4 cut(s)	83, 318, 508, 596
CsiI	ACCWGGT	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	596, 614
CviAII	CATG	2 cut(s)	161, 526
CviQI	GTAC	2 cut(s)	596, 614
DdeI	CTNAG	3 cut(s)	333, 609, 711
DpnI	GATC	4 cut(s)	108, 180, 266, 684
DpnII	GATC	4 cut(s)	106, 178, 264, 682
DraIII	CACNNNGTG	1 cut(s)	714
EaeI	YGGCCR	1 cut(s)	774
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	2 cut(s)	112, 747
Eco105I	TACGTA	1 cut(s)	617
Eco31I	GGTCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	43, 102
EcoT22I	ATGCAT	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	164, 529
FaiI	YATR	6 cut(s)	9, 53, 162, 186, 527, 545
FaqI	GGGAC	2 cut(s)	511, 599
FatI	CATG	2 cut(s)	160, 525
FauI	CCCGC	1 cut(s)	507
Fnu4HI	GCNGC	9 cut(s)	78, 126, 312, 420, 531, 551, 554, 696, 699
FokI	GGATG	3 cut(s)	224, 338, 578
Fsp4HI	GCNGC	9 cut(s)	78, 126, 312, 420, 531, 551, 554, 696, 699
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	9 cut(s)	78, 126, 312, 420, 531, 551, 554, 696, 699
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	776
HgaI	GACGC	4 cut(s)	83, 318, 508, 596
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	164, 529
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	2 cut(s)	335, 742
HinfI	GANTC	5 cut(s)	23, 113, 147, 621, 719
HpaI	GTTAAC	1 cut(s)	427
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	9 cut(s)	28, 88, 146, 234, 275, 460, 687, 728, 740
Hpy188III	TCNNGA	2 cut(s)	110, 788
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	575, 649, 780
HpyCH4III	ACNGT	2 cut(s)	154, 734
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	5 cut(s)	7, 307, 533, 634, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 131, 419, 428, 766
HpyF3I	CTNAG	3 cut(s)	333, 609, 711
HpySE526I	ACGT	1 cut(s)	616
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	164, 529
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	106, 178, 264, 682
Lsp1109I	GCAGC	7 cut(s)	298, 406, 517, 540, 562, 682, 710
LweI	GCATC	2 cut(s)	283, 316
MabI	ACCWGGT	1 cut(s)	43
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	3 cut(s)	391, 433, 781
MalI	GATC	4 cut(s)	108, 180, 266, 684
MboI	GATC	4 cut(s)	106, 178, 264, 682
MboII	GAAGA	5 cut(s)	32, 78, 173, 229, 274
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	2 cut(s)	106, 264
MluCI	AATT	5 cut(s)	10, 257, 302, 560, 800
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	3 cut(s)	85, 111, 718
Mph1103I	ATGCAT	1 cut(s)	9
MseI	TTAA	2 cut(s)	321, 426
MspA1I	CMGCKG	2 cut(s)	553, 701
MspR9I	CCNGG	2 cut(s)	45, 104
MunI	CAATTG	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	45, 104
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	5 cut(s)	125, 131, 419, 428, 766
NdeII	GATC	4 cut(s)	106, 178, 264, 682
NlaIII	CATG	2 cut(s)	164, 529
NlaIV	GGNNCC	1 cut(s)	108
NsiI	ATGCAT	1 cut(s)	9
PfeI	GAWTC	4 cut(s)	23, 147, 621, 719
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	9 cut(s)	79, 127, 313, 421, 532, 552, 555, 697, 700
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	43, 102
PspGI	CCWGG	2 cut(s)	43, 102
PspN4I	GGNNCC	1 cut(s)	108
PstI	CTGCAG	2 cut(s)	535, 700
PsuI	RGATCY	2 cut(s)	106, 264
PvuII	CAGCTG	2 cut(s)	553, 701
RsaI	GTAC	2 cut(s)	597, 615
RsaNI	GTAC	2 cut(s)	596, 614
SaqAI	TTAA	2 cut(s)	321, 426
SatI	GCNGC	9 cut(s)	78, 126, 312, 420, 531, 551, 554, 696, 699
Sau3AI	GATC	4 cut(s)	106, 178, 264, 682
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	45, 104
SexAI	ACCWGGT	1 cut(s)	43
SfaNI	GCATC	2 cut(s)	283, 316
SfcI	CTRYAG	2 cut(s)	531, 696
SmlI	CTYRAG	1 cut(s)	786
SmoI	CTYRAG	1 cut(s)	786
SnaBI	TACGTA	1 cut(s)	617
Sse9I	AATT	5 cut(s)	10, 257, 302, 560, 800
SsiI	CCGC	7 cut(s)	78, 123, 126, 431, 509, 514, 758
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	43, 102
TaaI	ACNGT	2 cut(s)	154, 734
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	1 cut(s)	447
TasI	AATT	5 cut(s)	10, 257, 302, 560, 800
TatI	WGTACW	1 cut(s)	595
TauI	GCSGC	2 cut(s)	80, 128
TfiI	GAWTC	4 cut(s)	23, 147, 621, 719
Tru1I	TTAA	2 cut(s)	321, 426
Tru9I	TTAA	2 cut(s)	321, 426
TscAI	CASTG	2 cut(s)	157, 715
TseI	GCWGC	7 cut(s)	311, 419, 530, 550, 553, 695, 698
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	2 cut(s)	157, 715
XapI	RAATTY	1 cut(s)	800
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.