Rorug05G0406400

BAG family molecular chaperone regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002445
Physical Location & Seq
Reverse (-)
55979964 .. 55981358
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0406400.1

Sequence Viewer

Length: 1395 bp
ATGTCCAACATTGATGCTGTAACCTCGTCCTTTGCTGCATCACTTGCGCTTGCTAGCAGTGATGTCGTAGATGTCTCAAGAGCCTCGAATGGCATCCAGCAATGTGCCAAGCAATCTTTTCTGTTGGCACGTCCTCTAGTGAAGAAACCGGCTGCTTTGAATGATCAGAAACGTTTTTTCCGGCGAGTATGGGTCCTTGACAAAGGTTTCAAGATTCAAGAGCGGGCTCCAAACCGTTTTGTCCTGGAATTTGATTTGCGCAAGGATCGTAGTAAGGTTTTAAAGGGTGGACCATGGCGTTTTAATAACCAGGCTCCGGTTGTGCTTCAGGAGTATGATGGCATCAAGGCTATTGAAGAGGTTGATCTGACTGTCCTCTTCTTCTGGGTTCGACTTAGTAATATTCCGCCATTGTTTGAGGAGCCTAACATGATCAGAGGTATCGCTTCTGTGGCTGGTAAGTATCTTGAGTTGGATGATAAACTCTTTGCAAATACAGGTAAGGTTAGGGTTCATGTGGCACATGATATTTCGAAACCTTTTTTCCTCAATAAAATCCTAAAACTGGCACCTGGAGTTGAGGTTGAAATTTCATATTTTTTTGAAAACCTGGTAGGCAAGTGTGATCATTGCAATTTGATTTATCATGAGGGAGACTATTGCCCTTTGCTTGGTAGCCATGCCACAACAGGTATAAGACGAAGCATTGGAGAACAGAGGAAGGATTTGGTTGGTCCTTCTCTAGGGTTTGCAGCTAACACTTTTGTAGATGGAACCTTTCGTTTTCAGGGTGTGCAGACACCTATTTTGCCATCTATCTACAGGTCCTTATTCCAGCCCAAGGAAGCTTCTAAAGCACGCAAACCTATCATACTGCGTGACAGAGTCCTAAGTGCCACAGAAATGGAGAAGGAGGTGCACCAACCTTTAGCGTTGGCAGTAATTGCAGCTCCAGACATGGAGGTCTCATCTTCTGAACTTATCGCTCCAAGTGAAGGCATGGAATTTGATAAGAAGGTAGGGTCTGCAAGAAATAGCCCGAAGGCCTCTAAGGATGCAGAACCAGCTGTACCGGTTGAAGCAGAGAACAAGGAGAGTAGGGGTGACAAGCGTCACCTCCCCCCCTCTCCTTCAAAATCTCCCCAAAAACTAAAGATTCTGCTACCAGAATTATTCAAACCGTTGCTGCCAGATATCCAGGCAAAGAAACAAAAATTGTCTATGTTTACAAGTAAGTTCTCTGCCAGATCTTTGGGTATGGTTGAAGCTCCTGGGAATATTTTAGTGCCTAAAGATGTGATGCAAACAAGCTCTGGCACAAACAAGAAAAGAGGAAGGCCTCTGGGAGCAAAGAATAAAAATCCTCCAAAGTCAAAGAAGGTTGCGGCTGCGTAA

Protein Analysis

464

Amino Acids

51.34

Weight (kDa)

9.69

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 38 - 111 4.6e-10 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 962
Acc16I TGCGCA 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 568
AccBSI CCGCTC 1 cut(s) 223
AciI CCGC 3 cut(s) 223, 407, 1385
AclI AACGTT 1 cut(s) 172
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 3 cut(s) 248, 588, 1004
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 1 cut(s) 1071
AfiI CCNNNNNNNGG 6 cut(s) 316, 565, 671, 743, 841, 995
AgeI ACCGGT 1 cut(s) 1072
AjiI CACGTC 1 cut(s) 131
AjnI CCWGG 6 cut(s) 243, 309, 571, 609, 1197, 1270
AluBI AGCT 6 cut(s) 755, 848, 950, 1067, 1268, 1311
AluI AGCT 6 cut(s) 755, 848, 950, 1067, 1268, 1311
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 3 cut(s) 79, 648, 970
Alw44I GTGCAC 1 cut(s) 917
AlwI GGATC 1 cut(s) 273
AoxI GGCC 2 cut(s) 1044, 1337
ApaLI GTGCAC 1 cut(s) 917
ApeKI GCWGC 6 cut(s) 35, 152, 752, 947, 1186, 1388
ApoI RAATTY 3 cut(s) 248, 588, 1004
ArsI GACNNNNNNTTYG 2 cut(s) 790, 822
AsiGI ACCGGT 1 cut(s) 1072
AspLEI GCGC 2 cut(s) 49, 261
AspS9I GGNCC 4 cut(s) 193, 290, 734, 825
AsuHPI GGTGA 2 cut(s) 1106, 1115
AsuII TTCGAA 1 cut(s) 533
AsuNHI GCTAGC 1 cut(s) 53
AvaII GGWCC 4 cut(s) 193, 290, 734, 825
BaeGI GKGCMC 1 cut(s) 921
BanI GGYRCC 1 cut(s) 568
BanII GRGCYC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 6 cut(s) 22, 139, 764, 959, 1173, 1375
BccI CCATC 3 cut(s) 332, 764, 820
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 6 cut(s) 245, 311, 573, 611, 1199, 1272
BclI TGATCA 3 cut(s) 163, 432, 625
BcoDI GTCTC 3 cut(s) 79, 648, 970
BfaI CTAG 3 cut(s) 54, 137, 743
BfmI CTRYAG 1 cut(s) 820
BglII AGATCT 1 cut(s) 1247
BisI GCNGC 7 cut(s) 36, 153, 753, 948, 1187, 1386, 1389
BlsI GCNGC 7 cut(s) 37, 154, 754, 949, 1188, 1387, 1390
Bme1390I CCNGG 6 cut(s) 245, 311, 573, 611, 1199, 1272
Bme18I GGWCC 4 cut(s) 193, 290, 734, 825
BmgBI CACGTC 1 cut(s) 131
BmgT120I GGNCC 4 cut(s) 193, 290, 734, 825
BmiI GGNNCC 6 cut(s) 194, 228, 315, 423, 570, 775
BmrFI CCNGG 6 cut(s) 245, 311, 573, 611, 1199, 1272
BmsI GCATC 6 cut(s) 4, 47, 102, 351, 1045, 1290
BmtI GCTAGC 1 cut(s) 57
BoxI GACNNNNGTC 1 cut(s) 1110
BpmI CTGGAG 2 cut(s) 594, 936
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 61, 488
BsaI GGTCTC 1 cut(s) 970
BsaJI CCNNGG 3 cut(s) 293, 840, 1271
BsaWI WCCGGW 2 cut(s) 316, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 6 cut(s) 316, 565, 671, 743, 841, 995
Bse118I RCCGGY 2 cut(s) 148, 1072
Bse1I ACTGG 1 cut(s) 570
Bse3DI GCAATG 2 cut(s) 107, 628
BseBI CCWGG 6 cut(s) 245, 311, 573, 611, 1199, 1272
BseDI CCNNGG 3 cut(s) 293, 840, 1271
BseGI GGATG 3 cut(s) 93, 481, 1060
BseLI CCNNNNNNNGG 6 cut(s) 316, 565, 671, 743, 841, 995
BseMI GCAATG 2 cut(s) 107, 628
BseNI ACTGG 1 cut(s) 570
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 921
BseXI GCAGC 6 cut(s) 22, 139, 764, 959, 1173, 1375
BsgI GTGCAG 1 cut(s) 815
BshFI GGCC 2 cut(s) 1046, 1339
BshNI GGYRCC 1 cut(s) 568
BshTI ACCGGT 1 cut(s) 1072
BsiHKAI GWGCWC 1 cut(s) 921
BsiSI CCGG 4 cut(s) 149, 181, 317, 1073
BslI CCNNNNNNNGG 6 cut(s) 316, 565, 671, 743, 841, 995
BsmAI GTCTC 3 cut(s) 79, 648, 970
BsnI GGCC 2 cut(s) 1046, 1339
Bso31I GGTCTC 1 cut(s) 970
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 229, 921
Bsp143I GATC 6 cut(s) 163, 265, 364, 432, 625, 1247
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 3 cut(s) 223, 407, 1385
BspANI GGCC 2 cut(s) 1046, 1339
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 6 cut(s) 194, 228, 315, 423, 570, 775
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 568
BspTNI GGTCTC 1 cut(s) 970
BsrBI CCGCTC 1 cut(s) 223
BsrDI GCAATG 2 cut(s) 107, 628
BsrFI RCCGGY 2 cut(s) 148, 1072
BsrI ACTGG 1 cut(s) 570
BssAI RCCGGY 2 cut(s) 148, 1072
BssECI CCNNGG 3 cut(s) 293, 840, 1271
BssMI GATC 6 cut(s) 163, 265, 364, 432, 625, 1247
BssT1I CCWWGG 2 cut(s) 293, 840
Bst2UI CCWGG 6 cut(s) 245, 311, 573, 611, 1199, 1272
Bst4CI ACNGT 3 cut(s) 236, 373, 1182
Bst6I CTCTTC 2 cut(s) 351, 383
BstAPI GCANNNNNTGC 2 cut(s) 44, 944
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 4 cut(s) 51, 55, 225, 859
BstDEI CTNAG 3 cut(s) 395, 890, 1050
BstDSI CCRYGG 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 741
BstF5I GGATG 3 cut(s) 93, 481, 1060
BstHHI GCGC 2 cut(s) 49, 261
BstKTI GATC 6 cut(s) 166, 268, 367, 435, 628, 1250
BstMAI GTCTC 3 cut(s) 79, 648, 970
BstMBI GATC 6 cut(s) 163, 265, 364, 432, 625, 1247
BstMWI GCNNNNNNNGC 5 cut(s) 44, 452, 854, 944, 1064
BstNI CCWGG 6 cut(s) 245, 311, 573, 611, 1199, 1272
BstPAI GACNNNNGTC 1 cut(s) 1110
BstSCI CCNGG 6 cut(s) 243, 309, 571, 609, 1197, 1270
BstSFI CTRYAG 1 cut(s) 820
BstSLI GKGCMC 1 cut(s) 921
BstV1I GCAGC 6 cut(s) 22, 139, 764, 959, 1173, 1375
BstX2I RGATCY 1 cut(s) 1247
BstXI CCANNNNNNTGG 2 cut(s) 904, 1252
BstYI RGATCY 1 cut(s) 1247
BsuRI GGCC 2 cut(s) 1046, 1339
BtgI CCRYGG 1 cut(s) 293
BtrI CACGTC 1 cut(s) 131
BtsCI GGATG 3 cut(s) 93, 481, 1060
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 4 cut(s) 51, 55, 225, 859
CciI TCATGA 1 cut(s) 646
CfoI GCGC 2 cut(s) 49, 261
Cfr10I RCCGGY 2 cut(s) 148, 1072
Cfr13I GGNCC 4 cut(s) 193, 290, 734, 825
CseI GACGC 1 cut(s) 1100
CsiI ACCWGGT 1 cut(s) 609
Csp6I GTAC 1 cut(s) 1070
CspAI ACCGGT 1 cut(s) 1072
CviAII CATG 8 cut(s) 294, 430, 515, 524, 647, 680, 958, 1000
CviQI GTAC 1 cut(s) 1070
DdeI CTNAG 3 cut(s) 395, 890, 1050
DpnI GATC 6 cut(s) 165, 267, 366, 434, 627, 1249
DpnII GATC 6 cut(s) 163, 265, 364, 432, 625, 1247
DraI TTTAAA 1 cut(s) 282
DrdI GACNNNNNNGTC 1 cut(s) 962
DseDI GACNNNNNNGTC 1 cut(s) 962
Eam1104I CTCTTC 2 cut(s) 351, 383
EarI CTCTTC 2 cut(s) 351, 383
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 293, 840
Eco147I AGGCCT 2 cut(s) 1046, 1339
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 970
Eco32I GATATC 1 cut(s) 1195
Eco47I GGWCC 4 cut(s) 193, 290, 734, 825
Eco57I CTGAAG 1 cut(s) 311
EcoNI CCTNNNNNAGG 1 cut(s) 741
EcoO109I RGGNCCY 2 cut(s) 193, 825
EcoRII CCWGG 6 cut(s) 243, 309, 571, 609, 1197, 1270
EcoRV GATATC 1 cut(s) 1195
EcoT14I CCWWGG 2 cut(s) 293, 840
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 293, 840
FaeI CATG 8 cut(s) 297, 433, 518, 527, 650, 683, 961, 1003
FatI CATG 8 cut(s) 293, 429, 514, 523, 646, 679, 957, 999
FauI CCCGC 1 cut(s) 216
FbaI TGATCA 3 cut(s) 163, 432, 625
Fnu4HI GCNGC 7 cut(s) 36, 153, 753, 948, 1187, 1386, 1389
FokI GGATG 3 cut(s) 80, 488, 1067
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 7 cut(s) 36, 153, 753, 948, 1187, 1386, 1389
FspBI CTAG 3 cut(s) 54, 137, 743
FspI TGCGCA 1 cut(s) 260
GlaI GCGC 2 cut(s) 48, 260
GluI GCNGC 7 cut(s) 36, 153, 753, 948, 1187, 1386, 1389
GsuI CTGGAG 2 cut(s) 594, 936
HaeIII GGCC 2 cut(s) 1046, 1339
HapII CCGG 4 cut(s) 149, 181, 317, 1073
HgaI GACGC 1 cut(s) 1100
HhaI GCGC 2 cut(s) 49, 261
Hin1II CATG 8 cut(s) 297, 433, 518, 527, 650, 683, 961, 1003
Hin6I GCGC 2 cut(s) 47, 259
HinP1I GCGC 2 cut(s) 47, 259
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 3 cut(s) 214, 885, 1156
HpaII CCGG 4 cut(s) 149, 181, 317, 1073
HphI GGTGA 2 cut(s) 1106, 1115
Hpy166II GTNNAC 3 cut(s) 290, 919, 1227
Hpy188I TCNGA 4 cut(s) 168, 369, 437, 976
Hpy188III TCNNGA 7 cut(s) 78, 211, 218, 329, 467, 647, 953
Hpy8I GTNNAC 3 cut(s) 290, 919, 1227
HpyAV CCTTC 9 cut(s) 715, 747, 904, 989, 1009, 1036, 1140, 1329, 1372
HpyCH4III ACNGT 3 cut(s) 236, 373, 1182
HpyCH4IV ACGT 2 cut(s) 130, 172
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 452, 854, 944, 1064
HpyF3I CTNAG 3 cut(s) 395, 890, 1050
HpySE526I ACGT 2 cut(s) 130, 172
Hsp92II CATG 8 cut(s) 297, 433, 518, 527, 650, 683, 961, 1003
HspAI GCGC 2 cut(s) 47, 259
Ksp22I TGATCA 3 cut(s) 163, 432, 625
Kzo9I GATC 6 cut(s) 163, 265, 364, 432, 625, 1247
LmnI GCTCC 7 cut(s) 232, 319, 421, 955, 991, 1273, 1346
Lsp1109I GCAGC 6 cut(s) 22, 139, 764, 959, 1173, 1375
LweI GCATC 6 cut(s) 4, 47, 102, 351, 1045, 1290
MabI ACCWGGT 1 cut(s) 609
MaeI CTAG 3 cut(s) 54, 137, 743
MaeII ACGT 2 cut(s) 130, 172
MaeIII GTNAC 4 cut(s) 19, 878, 1103, 1112
MalI GATC 6 cut(s) 165, 267, 366, 434, 627, 1249
MbiI CCGCTC 1 cut(s) 223
MboI GATC 6 cut(s) 163, 265, 364, 432, 625, 1247
MboII GAAGA 5 cut(s) 154, 368, 370, 373, 963
MflI RGATCY 1 cut(s) 1247
MhlI GDGCHC 2 cut(s) 229, 921
MluCI AATT 7 cut(s) 248, 588, 634, 942, 1004, 1169, 1214
MlyI GAGTC 1 cut(s) 894
MmeI TCCRAC 2 cut(s) 30, 453
MseI TTAA 2 cut(s) 281, 303
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 4 cut(s) 149, 181, 317, 1073
MspR9I CCNGG 6 cut(s) 245, 311, 573, 611, 1199, 1272
MvaI CCWGG 6 cut(s) 245, 311, 573, 611, 1199, 1272
MwoI GCNNNNNNNGC 5 cut(s) 44, 452, 854, 944, 1064
NcoI CCATGG 1 cut(s) 293
NdeII GATC 6 cut(s) 163, 265, 364, 432, 625, 1247
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 8 cut(s) 297, 433, 518, 527, 650, 683, 961, 1003
NlaIV GGNNCC 6 cut(s) 194, 228, 315, 423, 570, 775
NmuCI GTSAC 3 cut(s) 878, 1103, 1112
NsbI TGCGCA 1 cut(s) 260
NspV TTCGAA 1 cut(s) 533
PagI TCATGA 1 cut(s) 646
PceI AGGCCT 2 cut(s) 1046, 1339
PfeI GAWTC 2 cut(s) 214, 1156
PflFI GACNNNGTC 1 cut(s) 884
PfoI TCCNGGA 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 1072
PkrI GCNGC 7 cut(s) 37, 154, 754, 949, 1188, 1387, 1390
PleI GAGTC 1 cut(s) 893
PpsI GAGTC 1 cut(s) 893
PpuMI RGGWCCY 2 cut(s) 193, 825
PshAI GACNNNNGTC 1 cut(s) 1110
Psp1406I AACGTT 1 cut(s) 172
Psp5II RGGWCCY 2 cut(s) 193, 825
Psp6I CCWGG 6 cut(s) 243, 309, 571, 609, 1197, 1270
PspGI CCWGG 6 cut(s) 243, 309, 571, 609, 1197, 1270
PspN4I GGNNCC 6 cut(s) 194, 228, 315, 423, 570, 775
PspPI GGNCC 4 cut(s) 193, 290, 734, 825
PspPPI RGGWCCY 2 cut(s) 193, 825
PsrI GAACNNNNNNTAC 2 cut(s) 1053, 1085
PsuI RGATCY 1 cut(s) 1247
PsyI GACNNNGTC 1 cut(s) 884
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 1 cut(s) 1071
RsaNI GTAC 1 cut(s) 1070
RseI CAYNNNNRTG 1 cut(s) 902
SaqAI TTAA 2 cut(s) 281, 303
SatI GCNGC 7 cut(s) 36, 153, 753, 948, 1187, 1386, 1389
Sau3AI GATC 6 cut(s) 163, 265, 364, 432, 625, 1247
Sau96I GGNCC 4 cut(s) 193, 290, 734, 825
SchI GAGTC 1 cut(s) 894
ScrFI CCNGG 6 cut(s) 245, 311, 573, 611, 1199, 1272
SduI GDGCHC 2 cut(s) 229, 921
SexAI ACCWGGT 1 cut(s) 609
SfaNI GCATC 6 cut(s) 4, 47, 102, 351, 1045, 1290
SfcI CTRYAG 1 cut(s) 820
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 4 cut(s) 193, 290, 734, 825
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 76, 467
SmoI CTYRAG 2 cut(s) 76, 467
Sse9I AATT 7 cut(s) 248, 588, 634, 942, 1004, 1169, 1214
SseBI AGGCCT 2 cut(s) 1046, 1339
SsiI CCGC 3 cut(s) 223, 407, 1385
SspI AATATT 2 cut(s) 403, 1279
SspMI CTAG 3 cut(s) 54, 137, 743
StuI AGGCCT 2 cut(s) 1046, 1339
StyD4I CCNGG 6 cut(s) 243, 309, 571, 609, 1197, 1270
StyI CCWWGG 2 cut(s) 293, 840
TaaI ACNGT 3 cut(s) 236, 373, 1182
TaiI ACGT 2 cut(s) 133, 175
TaqI TCGA 3 cut(s) 86, 391, 533
TasI AATT 7 cut(s) 248, 588, 634, 942, 1004, 1169, 1214
TauI GCSGC 1 cut(s) 1388
TfiI GAWTC 2 cut(s) 214, 1156
Tru1I TTAA 2 cut(s) 281, 303
Tru9I TTAA 2 cut(s) 281, 303
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 3 cut(s) 878, 1103, 1112
TseI GCWGC 6 cut(s) 35, 152, 752, 947, 1186, 1388
Tsp45I GTSAC 3 cut(s) 878, 1103, 1112
TspDTI ATGAA 2 cut(s) 503, 582
TspRI CASTG 1 cut(s) 64
Tth111I GACNNNGTC 1 cut(s) 884
VneI GTGCAC 1 cut(s) 917
VpaK11BI GGWCC 4 cut(s) 193, 290, 734, 825
XagI CCTNNNNNAGG 1 cut(s) 741
XapI RAATTY 3 cut(s) 248, 588, 1004
XspI CTAG 3 cut(s) 54, 137, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.