Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

5750912 .. 5753582

Gene Structure 2671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1067400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAAAAAAGAACAAGAGTTGGTGTGGAAAATGATGGGTTAAATAGGAAAATAGATTGGGAGCTGAGGCCAGGTCGAATGCTTGTTCAAAAGAGAGACATTGGGGATGCAAATTCTGGGATTATGATCAAGATCAAGGTTTCTCATGGTTCTTATTACCATGATGTCCTTGTCCATGCTCAATCCACTTTTGGTGATCTGAAAAGAGTTCTTTCCCCTGAGACCGGATTGGAGCCAAAGGAACAAAGATTGTTGTTCAGAGGGAAAGAAAAGGAAGATAATGAATGTCTGCACATAGCGGGCGTAAAAGATATGTCGAAGATTGTATTACTAGAGGACCCGGCTAGCAAAGAGAAGAAGCTTGAAGAGATGAAGAAAAATCAAGGCGTATTGAATGCGTATGAGGAGGTTGCCAAAGTTAGAGCAGAGGTTGACAAACTCTCTCAAAAGATTGTTGATTTGGAGACAAGTCTGTTAAGTGGCCTCAAGGTTTCAGATAGGGAAATTGTGGTCTTAACAGAGTTACTCATGGTGGAGTTACTTAAATTGGATTCGATTGTAGCTGATGGAGAAGCAAAAGTGCAGAGGCGGGTCGAGGTTCGACGTGTGCAGAGCTTTGTTGACACGCTCGACAATCTGAAGGCGAGAAACTCTAATCCATTCAGCAAGAAGAGTATCAACGCAGTCTCGGTCACTAAAAATTGGGAGAGGTTTGAGTTGGGGGTTGGAAGCCTGCATATCCCAACCCCATTGCCATCTTCTACCAAAATAACTCAGGATTGGGAATTGTTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

266

Amino Acids

30.04

Weight (kDa)

8.75

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	43 - 111	1.2e-08	Ubiquitin family
BAG	PF02179	137 - 213	2.2e-14	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	299, 589
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	659
AfiI	CCNNNNNNNGG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	3 cut(s)	89, 365, 394
AjiI	CACGTC	1 cut(s)	605
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	4 cut(s)	64, 361, 563, 615
AluI	AGCT	4 cut(s)	64, 361, 563, 615
Alw26I	GTCTC	4 cut(s)	90, 215, 458, 691
AoxI	GGCC	2 cut(s)	68, 481
ApoI	RAATTY	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	206
AsuNHI	GCTAGC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	337
BbvCI	CCTCAGC	1 cut(s)	65
BccI	CCATC	3 cut(s)	29, 560, 763
BciT130I	CCWGG	1 cut(s)	72
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	4 cut(s)	90, 215, 458, 691
BfaI	CTAG	2 cut(s)	332, 345
Bme1390I	CCNGG	2 cut(s)	72, 341
Bme18I	GGWCC	1 cut(s)	337
BmgBI	CACGTC	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	234, 339
BmrFI	CCNGG	2 cut(s)	72, 341
BmsI	GCATC	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	341
BsaBI	GATNNNNATC	2 cut(s)	125, 131
BsaI	GGTCTC	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	749
Bse8I	GATNNNNATC	2 cut(s)	125, 131
BseBI	CCWGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	2 cut(s)	125, 131
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	3 cut(s)	56, 210, 788
BseRI	GAGGAG	1 cut(s)	419
BsgI	GTGCAG	3 cut(s)	275, 602, 629
BshFI	GGCC	2 cut(s)	70, 483
BsiSI	CCGG	2 cut(s)	225, 341
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	4 cut(s)	90, 215, 458, 691
BsmI	GAATGC	2 cut(s)	84, 400
BsnI	GGCC	2 cut(s)	70, 483
Bso31I	GGTCTC	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	126, 132, 196
BspACI	CCGC	2 cut(s)	299, 589
BspANI	GGCC	2 cut(s)	70, 483
BspCNI	CTCAG	3 cut(s)	57, 211, 787
BspLI	GGNNCC	2 cut(s)	234, 339
BspOI	GCTAGC	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	749
BssMI	GATC	3 cut(s)	126, 132, 196
Bst2UI	CCWGG	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	360, 665
BstC8I	GCNNGC	3 cut(s)	301, 346, 734
BstDEI	CTNAG	3 cut(s)	65, 219, 774
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	3 cut(s)	129, 135, 199
BstMAI	GTCTC	4 cut(s)	90, 215, 458, 691
BstMBI	GATC	3 cut(s)	126, 132, 196
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	70, 339
BsuRI	GGCC	2 cut(s)	70, 483
BtrI	CACGTC	1 cut(s)	605
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	3 cut(s)	301, 346, 734
Cfr13I	GGNCC	1 cut(s)	337
CviAII	CATG	4 cut(s)	146, 161, 176, 529
CviJI	RGCY	9 cut(s)	64, 70, 235, 344, 361, 483, 563, 615, 732
CviKI_1	RGCY	9 cut(s)	64, 70, 235, 344, 361, 483, 563, 615, 732
DdeI	CTNAG	3 cut(s)	65, 219, 774
DpnI	GATC	3 cut(s)	128, 134, 198
DpnII	GATC	3 cut(s)	126, 132, 196
Eam1104I	CTCTTC	2 cut(s)	360, 665
EarI	CTCTTC	2 cut(s)	360, 665
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	659
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	70
FaeI	CATG	4 cut(s)	149, 164, 179, 532
FaiI	YATR	9 cut(s)	125, 147, 162, 177, 296, 314, 402, 530, 738
FatI	CATG	4 cut(s)	145, 160, 175, 528
FauI	CCCGC	2 cut(s)	292, 582
FbaI	TGATCA	1 cut(s)	126
FokI	GGATG	1 cut(s)	119
FspBI	CTAG	2 cut(s)	332, 345
HaeIII	GGCC	2 cut(s)	70, 483
HapII	CCGG	2 cut(s)	225, 341
Hin1II	CATG	4 cut(s)	149, 164, 179, 532
HincII	GTYRAC	2 cut(s)	433, 622
HindII	GTYRAC	2 cut(s)	433, 622
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	2 cut(s)	225, 341
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	433, 622
Hpy188I	TCNGA	4 cut(s)	201, 260, 496, 639
Hpy188III	TCNNGA	2 cut(s)	130, 776
Hpy8I	GTNNAC	2 cut(s)	433, 622
Hpy99I	CGWCG	1 cut(s)	606
HpyAV	CCTTC	1 cut(s)	634
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	5 cut(s)	110, 292, 583, 610, 736
HpyF3I	CTNAG	3 cut(s)	65, 219, 774
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	4 cut(s)	149, 164, 179, 532
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	126, 132, 196
LmnI	GCTCC	2 cut(s)	61, 232
LpnPI	CCDG	8 cut(s)	57, 84, 102, 231, 238, 354, 746, 761
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	332, 345
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	3 cut(s)	522, 537, 691
MalI	GATC	3 cut(s)	128, 134, 198
MboI	GATC	3 cut(s)	126, 132, 196
MboII	GAAGA	7 cut(s)	287, 331, 367, 377, 385, 682, 750
MluCI	AATT	5 cut(s)	112, 504, 545, 700, 785
MmeI	TCCRAC	1 cut(s)	706
MseI	TTAA	4 cut(s)	41, 476, 515, 543
MspI	CCGG	2 cut(s)	225, 341
MspR9I	CCNGG	2 cut(s)	72, 341
Mva1269I	GAATGC	2 cut(s)	84, 400
MvaI	CCWGG	1 cut(s)	72
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	3 cut(s)	126, 132, 196
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	4 cut(s)	149, 164, 179, 532
NlaIV	GGNNCC	2 cut(s)	234, 339
NmuCI	GTSAC	1 cut(s)	691
PctI	GAATGC	2 cut(s)	84, 400
PfeI	GAWTC	1 cut(s)	551
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	234, 339
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
SaqAI	TTAA	4 cut(s)	41, 476, 515, 543
Sau3AI	GATC	3 cut(s)	126, 132, 196
Sau96I	GGNCC	1 cut(s)	337
ScrFI	CCNGG	2 cut(s)	72, 341
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	5 cut(s)	112, 504, 545, 700, 785
SsiI	CCGC	2 cut(s)	299, 589
SspMI	CTAG	2 cut(s)	332, 345
StyD4I	CCNGG	2 cut(s)	70, 339
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	7 cut(s)	76, 317, 554, 594, 601, 630, 792
TaqII	GACCGA	1 cut(s)	679
TasI	AATT	5 cut(s)	112, 504, 545, 700, 785
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	4 cut(s)	41, 476, 515, 543
Tru9I	TTAA	4 cut(s)	41, 476, 515, 543
TseFI	GTSAC	1 cut(s)	691
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	3 cut(s)	17, 297, 386
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	112
XspI	CTAG	2 cut(s)	332, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.