Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

6604860 .. 6608533

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTTCAAGAAGAACCCGACTCCGAAAGCCTCGCCGGTAACCCCTCCGAACGAGGAGACCGTCTCGGAGCTCCGACCCGGCGGCATGTGTGTCCAGCGCCGCGACTATGACGACGAACACCTCGCCGCCGCCGCCGCTTCTGGTCCCGTCATCACCATCCACGTCACTCACGGCCCGGTTCACCACGTCATCAACCTCCCGGCCCACTCCACTTTCGGGGAATTGAAGGGACTGGTTTCGCAGAAGACCGGGCTGGAGCCGGAGGAGCAGAAGCTGTTGTTCAGGGGGAAAGAGAAGGAAGATGAAGAGCATTTGGATGCGGCCGGCGCGAAGGATAATTCCAGGGTTATGCTCTTGCAGGAGCCGAAAAGGAAAGAGAGGAGCATCGGGGAGTTGAATGAGAACAATGAGATGGAAGTTGATGCTGGGGAGGTTGGAGTTGGAAGCAATGAGATGGAGGCTGATGCTGGAGAGATTGGAGCTATGAGCCCTGAGATGGCCAAGGCATTTGAAGCAATTGCTGGAGTCAGAGCCGAGGTTGATGGCCTGTCCGACAGGGTTTCTGCTTTGGATGTGGCTGTGAATGGTGGCACCAAGGTTTCCGATAAGGAGTTTGCTGTATCAACAGAGTTGCTCATGAGGCAGTTGCTGAAATTGGATGGCATCAAAGCCGAAGGAGAAGCTAGAATGCAGCGGAAGGCTGAGGTACGTCGTGTCCAGAACCTTGTGGATTCACTGGACGATCTGAAGGTGAAAAACTCCAATCCGATTAACAATGATAGCAATGGTGTGGCTTCTCAAAATAGCAATGGTGTGAATCCTCAGAACAGCAGCGGTGTCGCTTCTCAAAATGGCAATGCTGTCTCGGTAACAACCAAATGGGAAACCTTTGACTCTGGTGTGGGTAGCCTGACTGCTCCAACCCCAGTGCCATCTTCCACAGAAGTAACCGAGGACTGGCAGAAGTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

325

Amino Acids

34.79

Weight (kDa)

4.89

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	51 - 122	7e-10	Ubiquitin family
BAG	PF02179	173 - 248	6.9e-18	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	590
AccII	CGCG	2 cut(s)	102, 329
AciI	CCGC	9 cut(s)	81, 100, 126, 129, 132, 135, 320, 694, 834
AcoI	YGGCCR	2 cut(s)	321, 498
AcuI	CTGAAG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	708
AfiI	CCNNNNNNNGG	3 cut(s)	216, 496, 957
AgsI	TTSAA	4 cut(s)	7, 226, 397, 512
AjiI	CACGTC	2 cut(s)	163, 187
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	4 cut(s)	70, 274, 482, 683
AluI	AGCT	4 cut(s)	70, 274, 482, 683
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	3 cut(s)	50, 67, 868
AlwNI	CAGNNNCTG	2 cut(s)	274, 649
AoxI	GGCC	5 cut(s)	172, 201, 321, 498, 544
ApeKI	GCWGC	2 cut(s)	691, 831
AspLEI	GCGC	2 cut(s)	99, 329
AspS9I	GGNCC	3 cut(s)	143, 173, 202
AsuC2I	CCSGG	4 cut(s)	78, 176, 200, 250
AsuHPI	GGTGA	3 cut(s)	145, 173, 763
AvaII	GGWCC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	590
BanII	GRGCYC	2 cut(s)	72, 491
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	2 cut(s)	703, 843
BccI	CCATC	7 cut(s)	164, 406, 448, 490, 536, 653, 940
BceAI	ACGGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	820, 854
BciT130I	CCWGG	1 cut(s)	343
BcnI	CCSGG	4 cut(s)	78, 176, 200, 250
BcoDI	GTCTC	3 cut(s)	50, 67, 868
BfaI	CTAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	9 cut(s)	82, 100, 126, 129, 132, 135, 321, 692, 832
BlsI	GCNGC	9 cut(s)	83, 101, 127, 130, 133, 136, 322, 693, 833
Bme1390I	CCNGG	5 cut(s)	78, 176, 200, 250, 343
Bme18I	GGWCC	1 cut(s)	143
BmgBI	CACGTC	2 cut(s)	163, 187
BmgT120I	GGNCC	3 cut(s)	143, 173, 202
BmiI	GGNNCC	4 cut(s)	145, 258, 363, 592
BmrFI	CCNGG	5 cut(s)	78, 176, 200, 250, 343
BmrI	ACTGGG	1 cut(s)	920
BmsI	GCATC	5 cut(s)	307, 393, 412, 454, 672
BmuI	ACTGGG	1 cut(s)	920
BpiI	GAAGAC	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	3 cut(s)	275, 489, 543
Bpu10I	CCTNAGC	1 cut(s)	702
BpuMI	CCSGG	4 cut(s)	78, 176, 200, 250
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	5 cut(s)	342, 501, 534, 594, 951
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 496, 957
Bse118I	RCCGGY	2 cut(s)	34, 323
Bse1I	ACTGG	4 cut(s)	237, 741, 926, 962
Bse3DI	GCAATG	4 cut(s)	454, 790, 814, 862
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	5 cut(s)	342, 501, 534, 594, 951
BseGI	GGATG	4 cut(s)	156, 322, 577, 664
BseLI	CCNNNNNNNGG	3 cut(s)	216, 496, 957
BseMI	GCAATG	4 cut(s)	454, 790, 814, 862
BseMII	CTCAG	3 cut(s)	483, 693, 836
BseNI	ACTGG	4 cut(s)	237, 741, 926, 962
BseRI	GAGGAG	3 cut(s)	68, 278, 394
BseX3I	CGGCCG	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	703, 843
BseYI	CCCAGC	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	102, 329
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	5 cut(s)	174, 203, 323, 500, 546
BshNI	GGYRCC	1 cut(s)	590
BsiEI	CGRYCG	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	7 cut(s)	35, 78, 176, 200, 249, 260, 324
BslFI	GGGAC	2 cut(s)	129, 243
BslI	CCNNNNNNNGG	3 cut(s)	216, 496, 957
BsmAI	GTCTC	3 cut(s)	50, 67, 868
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	129, 243
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	5 cut(s)	174, 203, 323, 500, 546
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	72, 491
Bsp143I	GATC	1 cut(s)	742
BspACI	CCGC	9 cut(s)	81, 100, 126, 129, 132, 135, 320, 694, 834
BspANI	GGCC	5 cut(s)	174, 203, 323, 500, 546
BspCNI	CTCAG	3 cut(s)	484, 694, 835
BspFNI	CGCG	2 cut(s)	102, 329
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	4 cut(s)	145, 258, 363, 592
BspQI	GCTCTTC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	4 cut(s)	454, 790, 814, 862
BsrFI	RCCGGY	2 cut(s)	34, 323
BsrI	ACTGG	4 cut(s)	237, 741, 926, 962
BssAI	RCCGGY	2 cut(s)	34, 323
BssECI	CCNNGG	5 cut(s)	342, 501, 534, 594, 951
BssMI	GATC	1 cut(s)	742
BssT1I	CCWWGG	2 cut(s)	501, 594
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	492, 702, 822
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	4 cut(s)	156, 322, 577, 664
BstFNI	CGCG	2 cut(s)	102, 329
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	99, 329
BstKTI	GATC	1 cut(s)	745
BstMAI	GTCTC	3 cut(s)	50, 67, 868
BstMBI	GATC	1 cut(s)	742
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 134, 265, 326, 512, 640
BstNI	CCWGG	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	88
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	5 cut(s)	76, 174, 198, 248, 341
BstUI	CGCG	2 cut(s)	102, 329
BstV1I	GCAGC	2 cut(s)	703, 843
BstV2I	GAAGAC	1 cut(s)	251
BstZI	CGGCCG	1 cut(s)	321
BsuRI	GGCC	5 cut(s)	174, 203, 323, 500, 546
BtrI	CACGTC	2 cut(s)	163, 187
BtsCI	GGATG	4 cut(s)	156, 322, 577, 664
BtsIMutI	CAGTG	2 cut(s)	734, 933
Cac8I	GCNNGC	1 cut(s)	325
CaiI	CAGNNNCTG	2 cut(s)	274, 649
CciI	TCATGA	1 cut(s)	636
CfoI	GCGC	2 cut(s)	99, 329
Cfr10I	RCCGGY	2 cut(s)	34, 323
Cfr13I	GGNCC	3 cut(s)	143, 173, 202
Csp6I	GTAC	1 cut(s)	707
CviAII	CATG	2 cut(s)	85, 637
CviQI	GTAC	1 cut(s)	707
DdeI	CTNAG	3 cut(s)	492, 702, 822
DpnI	GATC	1 cut(s)	744
DpnII	GATC	1 cut(s)	742
EaeI	YGGCCR	2 cut(s)	321, 498
EagI	CGGCCG	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	501, 594
Eco24I	GRGCYC	2 cut(s)	72, 491
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	143
Eco52I	CGGCCG	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	767
Eco91I	GGTNACC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	341
EcoT14I	CCWWGG	2 cut(s)	501, 594
EcoT38I	GRGCYC	2 cut(s)	72, 491
ErhI	CCWWGG	2 cut(s)	501, 594
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	2 cut(s)	88, 640
FaiI	YATR	5 cut(s)	86, 108, 350, 485, 638
FaqI	GGGAC	2 cut(s)	129, 243
FatI	CATG	2 cut(s)	84, 636
Fnu4HI	GCNGC	9 cut(s)	82, 100, 126, 129, 132, 135, 321, 692, 832
FokI	GGATG	4 cut(s)	143, 329, 584, 671
FriOI	GRGCYC	2 cut(s)	72, 491
Fsp4HI	GCNGC	9 cut(s)	82, 100, 126, 129, 132, 135, 321, 692, 832
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	2 cut(s)	98, 328
GluI	GCNGC	9 cut(s)	82, 100, 126, 129, 132, 135, 321, 692, 832
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	3 cut(s)	275, 489, 543
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	5 cut(s)	174, 203, 323, 500, 546
HapII	CCGG	7 cut(s)	35, 78, 176, 200, 249, 260, 324
HhaI	GCGC	2 cut(s)	99, 329
Hin1II	CATG	2 cut(s)	88, 640
Hin6I	GCGC	2 cut(s)	97, 327
HinP1I	GCGC	2 cut(s)	97, 327
HinfI	GANTC	5 cut(s)	19, 525, 731, 817, 893
HpaII	CCGG	7 cut(s)	35, 78, 176, 200, 249, 260, 324
HphI	GGTGA	3 cut(s)	145, 173, 763
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	3 cut(s)	7, 637, 718
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	116, 714
HpyAV	CCTTC	6 cut(s)	220, 289, 325, 668, 691, 742
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	3 cut(s)	162, 186, 709
HpyCH4V	TGCA	2 cut(s)	358, 691
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 134, 265, 326, 512, 640
HpyF3I	CTNAG	3 cut(s)	492, 702, 822
HpySE526I	ACGT	3 cut(s)	162, 186, 709
Hsp92II	CATG	2 cut(s)	88, 640
HspAI	GCGC	2 cut(s)	97, 327
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	742
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	8 cut(s)	67, 75, 256, 265, 361, 381, 479, 922
Lsp1109I	GCAGC	2 cut(s)	703, 843
LweI	GCATC	5 cut(s)	307, 393, 412, 454, 672
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	3 cut(s)	162, 186, 709
MaeIII	GTNAC	4 cut(s)	37, 163, 868, 946
MalI	GATC	1 cut(s)	744
MboI	GATC	1 cut(s)	742
MboII	GAAGA	5 cut(s)	22, 256, 311, 317, 927
MfeI	CAATTG	1 cut(s)	516
MhlI	GDGCHC	2 cut(s)	72, 491
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	4 cut(s)	221, 337, 516, 653
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	3 cut(s)	13, 534, 887
MmeI	TCCRAC	5 cut(s)	97, 415, 421, 576, 944
Mox20I	TGGCCA	1 cut(s)	500
MroNI	GCCGGC	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	1 cut(s)	771
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	500
MspA1I	CMGCKG	2 cut(s)	694, 834
MspI	CCGG	7 cut(s)	35, 78, 176, 200, 249, 260, 324
MspR9I	CCNGG	5 cut(s)	78, 176, 200, 250, 343
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	343
MvnI	CGCG	2 cut(s)	102, 329
MwoI	GCNNNNNNNGC	6 cut(s)	131, 134, 265, 326, 512, 640
NaeI	GCCGGC	1 cut(s)	325
NciI	CCSGG	4 cut(s)	78, 176, 200, 250
NdeII	GATC	1 cut(s)	742
NgoMIV	GCCGGC	1 cut(s)	323
NlaIII	CATG	2 cut(s)	88, 640
NlaIV	GGNNCC	4 cut(s)	145, 258, 363, 592
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	88
PagI	TCATGA	1 cut(s)	636
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	693
PdiI	GCCGGC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	731, 817
PkrI	GCNGC	9 cut(s)	83, 101, 127, 130, 133, 136, 322, 693, 833
PleI	GAGTC	3 cut(s)	13, 533, 887
PpsI	GAGTC	3 cut(s)	13, 533, 887
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	341
PspEI	GGTNACC	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	4 cut(s)	145, 258, 363, 592
PspPI	GGNCC	3 cut(s)	143, 173, 202
PstNI	CAGNNNCTG	2 cut(s)	274, 649
RsaI	GTAC	1 cut(s)	708
RsaNI	GTAC	1 cut(s)	707
RseI	CAYNNNNRTG	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	9 cut(s)	82, 100, 126, 129, 132, 135, 321, 692, 832
Sau3AI	GATC	1 cut(s)	742
Sau96I	GGNCC	3 cut(s)	143, 173, 202
SchI	GAGTC	3 cut(s)	13, 534, 887
ScrFI	CCNGG	5 cut(s)	78, 176, 200, 250, 343
SduI	GDGCHC	2 cut(s)	72, 491
SfaNI	GCATC	5 cut(s)	307, 393, 412, 454, 672
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	4 cut(s)	221, 337, 516, 653
SsiI	CCGC	9 cut(s)	81, 100, 126, 129, 132, 135, 320, 694, 834
SspMI	CTAG	1 cut(s)	684
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	5 cut(s)	76, 174, 198, 248, 341
StyI	CCWWGG	2 cut(s)	501, 594
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	3 cut(s)	165, 189, 712
TasI	AATT	4 cut(s)	221, 337, 516, 653
TauI	GCSGC	7 cut(s)	84, 102, 128, 131, 134, 137, 323
TfiI	GAWTC	2 cut(s)	731, 817
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TscAI	CASTG	2 cut(s)	741, 933
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	2 cut(s)	691, 831
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	741, 933
VpaK11BI	GGWCC	1 cut(s)	143
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.