Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000431.1

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Forward (+)

1289 .. 2220

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgaaaggcgatctgaagagaattcttgcaaatgagactggattagagccaaaggcgcagaggttgttgtatagaggaaaagagaaggatgatgttgaatgtttgcacatcgcaggtgtaaaagatatgtctaagattatgttattggaagacccagctagcaaagagaagaagcttgaagaaatgaacaaaaatcaaggtatactgaaagcctatgaagaggttgccaaagttagagcacaagttgacaagctctctcaaaagattgtggatatggagacaacactatgcaatggtaccaaggtcgcagatacggagattgtggtcttaacagagttgctcatggtggagttgctcaaattggattccattgaggcagatggagaagcaaaagtacagaggcgggtagaggttcgtcgtgtacaaagtttcgttgatacactcgacaacctaaaagcaagaaactctaatccattcagcaagagtagcaactctgtctcagtgactacaaattgggagagttttgaattgggggttggaagcctgcatgccccaaccccattgaaatcttttaccaagataactcaagattgggaactgtttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

202

Amino Acids

22.75

Weight (kDa)

5.63

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	104
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	202
AciI	CCGC	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	3 cut(s)	298, 396, 423
AgsI	TTSAA	4 cut(s)	98, 179, 527, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	3 cut(s)	158, 175, 253
AluI	AGCT	3 cut(s)	158, 175, 253
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	3 cut(s)	29, 272, 502
ApoI	RAATTY	1 cut(s)	21
Asp718I	GGTACC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	58
AsuNHI	GCTAGC	1 cut(s)	158
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanI	GGYRCC	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	241
BccI	CCATC	1 cut(s)	374
BcoDI	GTCTC	3 cut(s)	29, 272, 502
BfaI	CTAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	298
BmtI	GCTAGC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	241
BsmAI	GTCTC	3 cut(s)	29, 272, 502
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	512
BspLI	GGNNCC	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	104
BspOI	GCTAGC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	298
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	10
BssNAI	GTATAC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	300
Bst1107I	GTATAC	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	2 cut(s)	11, 213
BstAUI	TGTACA	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	160, 545, 549
BstDEI	CTNAG	2 cut(s)	132, 499
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	3 cut(s)	29, 272, 502
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 486
BstNSI	RCATGY	1 cut(s)	551
BstV2I	GAAGAC	1 cut(s)	156
BstZ17I	GTATAC	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	3 cut(s)	160, 545, 549
CfoI	GCGC	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	297, 395, 422
CviAII	CATG	2 cut(s)	343, 548
CviJI	RGCY	6 cut(s)	49, 158, 175, 212, 253, 543
CviKI_1	RGCY	6 cut(s)	49, 158, 175, 212, 253, 543
CviQI	GTAC	3 cut(s)	297, 395, 422
DdeI	CTNAG	2 cut(s)	132, 499
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	11, 213
EarI	CTCTTC	2 cut(s)	11, 213
Eco130I	CCWWGG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	346, 551
FaiI	YATR	9 cut(s)	72, 128, 140, 203, 216, 275, 289, 344, 549
FatI	CATG	2 cut(s)	342, 547
FauI	CCCGC	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	202
FokI	GGATG	1 cut(s)	101
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	346, 551
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	203, 247, 422
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	587
Hpy8I	GTNNAC	3 cut(s)	203, 247, 422
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4V	TGCA	4 cut(s)	29, 106, 291, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 486
HpyF3I	CTNAG	2 cut(s)	132, 499
Hsp92II	CATG	2 cut(s)	346, 551
HspAI	GCGC	1 cut(s)	56
KpnI	GGTACC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	24, 99, 168, 557
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	5 cut(s)	28, 161, 181, 191, 230
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	4 cut(s)	21, 359, 511, 527
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	6 cut(s)	54, 68, 214, 367, 393, 403
MseI	TTAA	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	55, 486
NdeII	GATC	1 cut(s)	10
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	346, 551
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	502
NspI	RCATGY	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	551
PaqCI	CACCTGC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	365
PspFI	CCCAGC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	298
RsaI	GTAC	3 cut(s)	298, 396, 423
RsaNI	GTAC	3 cut(s)	297, 395, 422
SaqAI	TTAA	1 cut(s)	329
Sau3AI	GATC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	585
SmoI	CTYRAG	1 cut(s)	585
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	4 cut(s)	21, 359, 511, 527
SsiI	CCGC	1 cut(s)	403
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	600
TaqI	TCGA	1 cut(s)	444
TasI	AATT	4 cut(s)	21, 359, 511, 527
TatI	WGTACW	2 cut(s)	394, 421
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	17, 200, 231
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	507
XapI	RAATTY	1 cut(s)	21
XceI	RCATGY	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.