Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

9282674 .. 9284904

Gene Structure 2231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G009710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAACCGACTTCGAACGCTTCGCCGGTCAACGCTCCGAACGAGGACTTCGACCCGGAGCTCCGACCCGGCGGGATGTGCGTCCAGCGCCGCGACTATGACGACGACTCCGCCGCCGCCCGTGGGCCCAACATCACGATCCGCGTCTATCACGGCCCGGCCCACCACGTCATCAACCTCCCGGCCCACTCCACTTTCGGGGAATTGAAGGGACTTGTTTCAGAGAAGACCGGGGTGAAGCCGGAGGAGCAGAAGCTGTTGTTCAGGGGGAAAGAGAAGGAGGATGAGGAGCATTTAGACGTGGCCGGTGTGAGGGATAATTCCAGGGTTATGCTCTTGCAGGAACCGAAAAGGAAAGAGAGGAGCGTCGGGGAGTTGAATGAGAGTGATGCAGCAGAGGCAAAGGCATTTGAAGCAATTGCTGAAGTTTCTGCTTTGGGTGTGGCTGTCAATGGTGGAACCGAGGTTTCCGATAAGGAGTTTGCTGTATCAACAGAGTTGCTGATGAGGCAGTTACTGAAACTGGATGGCATCAAAGCGGAAGGAGAAGCTAGGATGCAGCGGAAGGCTGAGGTACGTCGTGTCCAGAACCTTGTGGATACACTGGACACTCTAAAGGCGAAGAACTCCAATCCGATGAACAATAGCAATGGTGTGACTTCTCAAAATAGCAATGGTGTGACTCCTCAGAACTGCAACGGTGTCACTTCACAAAATGGCAATGCTGTCTCTGTAACAACCAAATGGGAGACCTTTGACTCCGGCATGGGTAGCCTGAGTGCCCCAACCCCAATGCCATCTTCCACAGAAGTAACTGAGGACTGGGAGAAGTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

279

Amino Acids

30.35

Weight (kDa)

4.98

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	45 - 116	2.6e-10	Ubiquitin family
BAG	PF02179	146 - 204	7.9e-16	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	93, 144
AciI	CCGC	8 cut(s)	72, 91, 111, 114, 117, 142, 539, 562
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
AgsI	TTSAA	3 cut(s)	208, 379, 413
AjiI	CACGTC	2 cut(s)	169, 301
AjnI	CCWGG	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	784, 816
AluBI	AGCT	3 cut(s)	61, 256, 551
AluI	AGCT	3 cut(s)	61, 256, 551
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	733, 743
AlwI	GGATC	1 cut(s)	133
AlwNI	CAGNNNCTG	2 cut(s)	256, 517
AoxI	GGCC	5 cut(s)	125, 154, 159, 183, 303
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	392, 559
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
AsuC2I	CCSGG	5 cut(s)	56, 69, 158, 182, 232
AsuHPI	GGTGA	1 cut(s)	247
AsuII	TTCGAA	1 cut(s)	14
BaeGI	GKGCMC	2 cut(s)	129, 784
BanII	GRGCYC	2 cut(s)	63, 129
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	404, 571
BccI	CCATC	2 cut(s)	521, 805
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	592
BcnI	CCSGG	5 cut(s)	56, 69, 158, 182, 232
BcoDI	GTCTC	2 cut(s)	733, 743
BfaI	CTAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	592
BisI	GCNGC	5 cut(s)	91, 114, 117, 393, 560
BlsI	GCNGC	5 cut(s)	92, 115, 118, 394, 561
Bme1390I	CCNGG	6 cut(s)	56, 69, 158, 182, 232, 325
BmgBI	CACGTC	2 cut(s)	169, 301
BmgT120I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
BmiI	GGNNCC	4 cut(s)	6, 127, 345, 460
BmrFI	CCNGG	6 cut(s)	56, 69, 158, 182, 232, 325
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	3 cut(s)	379, 540, 546
BmuI	ACTGGG	1 cut(s)	832
BpiI	GAAGAC	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	14
BpuMI	CCSGG	5 cut(s)	56, 69, 158, 182, 232
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	4 cut(s)	121, 231, 324, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 198, 312
Bse118I	RCCGGY	2 cut(s)	25, 305
Bse1I	ACTGG	3 cut(s)	528, 609, 827
Bse3DI	GCAATG	3 cut(s)	655, 679, 727
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	4 cut(s)	121, 231, 324, 462
BseGI	GGATG	4 cut(s)	81, 289, 532, 561
BseLI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
BseMI	GCAATG	3 cut(s)	655, 679, 727
BseMII	CTCAG	4 cut(s)	561, 701, 767, 807
BseNI	ACTGG	3 cut(s)	528, 609, 827
BseRI	GAGGAG	4 cut(s)	260, 302, 376, 675
BseSI	GKGCMC	2 cut(s)	129, 784
BseXI	GCAGC	2 cut(s)	404, 571
Bsh1236I	CGCG	2 cut(s)	93, 144
BshFI	GGCC	5 cut(s)	127, 156, 161, 185, 305
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 762
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
BsmAI	GTCTC	2 cut(s)	733, 743
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	5 cut(s)	127, 156, 161, 185, 305
Bso31I	GGTCTC	1 cut(s)	743
Bsp119I	TTCGAA	1 cut(s)	14
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	3 cut(s)	63, 129, 784
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	8 cut(s)	72, 91, 111, 114, 117, 142, 539, 562
BspANI	GGCC	5 cut(s)	127, 156, 161, 185, 305
BspCNI	CTCAG	4 cut(s)	562, 700, 768, 808
BspFNI	CGCG	2 cut(s)	93, 144
BspLI	GGNNCC	4 cut(s)	6, 127, 345, 460
BspPI	GGATC	1 cut(s)	133
BspT104I	TTCGAA	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	743
BsrDI	GCAATG	3 cut(s)	655, 679, 727
BsrFI	RCCGGY	2 cut(s)	25, 305
BsrI	ACTGG	3 cut(s)	528, 609, 827
BssAI	RCCGGY	2 cut(s)	25, 305
BssECI	CCNNGG	4 cut(s)	121, 231, 324, 462
BssMI	GATC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	701
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	4 cut(s)	570, 687, 776, 816
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	4 cut(s)	81, 289, 532, 561
BstFNI	CGCG	2 cut(s)	93, 144
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	733, 743
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 398, 413, 508, 771
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	6 cut(s)	54, 67, 156, 180, 230, 323
BstSLI	GKGCMC	2 cut(s)	129, 784
BstUI	CGCG	2 cut(s)	93, 144
BstV1I	GCAGC	2 cut(s)	404, 571
BstV2I	GAAGAC	1 cut(s)	233
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	5 cut(s)	127, 156, 161, 185, 305
BtgI	CCRYGG	1 cut(s)	121
BtrI	CACGTC	2 cut(s)	169, 301
BtsCI	GGATG	4 cut(s)	81, 289, 532, 561
BtsIMutI	CAGTG	1 cut(s)	602
CaiI	CAGNNNCTG	2 cut(s)	256, 517
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	25, 305
Cfr13I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
CseI	GACGC	3 cut(s)	70, 133, 355
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	1 cut(s)	766
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	4 cut(s)	570, 687, 776, 816
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	63, 129
Eco31I	GGTCTC	1 cut(s)	743
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	323
EcoT38I	GRGCYC	2 cut(s)	63, 129
FaeI	CATG	1 cut(s)	769
FaiI	YATR	3 cut(s)	99, 332, 767
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	765
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	5 cut(s)	91, 114, 117, 393, 560
FokI	GGATG	4 cut(s)	88, 296, 539, 568
FriOI	GRGCYC	2 cut(s)	63, 129
Fsp4HI	GCNGC	5 cut(s)	91, 114, 117, 393, 560
FspBI	CTAG	1 cut(s)	552
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	5 cut(s)	91, 114, 117, 393, 560
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	5 cut(s)	127, 156, 161, 185, 305
HapII	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 762
HgaI	GACGC	3 cut(s)	70, 133, 355
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	769
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	3 cut(s)	107, 682, 758
HpaII	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 762
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	6 cut(s)	39, 65, 223, 472, 636, 690
Hpy188III	TCNNGA	2 cut(s)	136, 586
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	3 cut(s)	107, 371, 582
HpyAV	CCTTC	4 cut(s)	202, 271, 536, 559
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	3 cut(s)	168, 300, 577
HpyCH4V	TGCA	4 cut(s)	340, 392, 559, 696
HpyF10VI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 398, 413, 508, 771
HpyF3I	CTNAG	4 cut(s)	570, 687, 776, 816
HpySE526I	ACGT	3 cut(s)	168, 300, 577
Hsp92II	CATG	1 cut(s)	769
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	6 cut(s)	40, 58, 66, 247, 289, 363
Lsp1109I	GCAGC	2 cut(s)	404, 571
LweI	GCATC	3 cut(s)	379, 540, 546
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	3 cut(s)	168, 300, 577
MaeIII	GTNAC	6 cut(s)	513, 655, 679, 703, 733, 811
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	3 cut(s)	238, 634, 792
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	3 cut(s)	63, 129, 784
MluCI	AATT	3 cut(s)	203, 319, 417
MlyI	GAGTC	3 cut(s)	101, 676, 752
MmeI	TCCRAC	1 cut(s)	88
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 762
MspR9I	CCNGG	6 cut(s)	56, 69, 158, 182, 232, 325
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	2 cut(s)	93, 144
MwoI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 398, 413, 508, 771
NciI	CCSGG	5 cut(s)	56, 69, 158, 182, 232
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	769
NlaIV	GGNNCC	4 cut(s)	6, 127, 345, 460
NmuCI	GTSAC	3 cut(s)	655, 679, 703
NspV	TTCGAA	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 48
PkrI	GCNGC	5 cut(s)	92, 115, 118, 394, 561
PleI	GAGTC	3 cut(s)	101, 676, 752
PpsI	GAGTC	3 cut(s)	101, 676, 752
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	6, 127, 345, 460
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	5 cut(s)	125, 126, 155, 160, 184
PstNI	CAGNNNCTG	2 cut(s)	256, 517
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	5 cut(s)	91, 114, 117, 393, 560
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
SchI	GAGTC	3 cut(s)	101, 676, 752
ScrFI	CCNGG	6 cut(s)	56, 69, 158, 182, 232, 325
SduI	GDGCHC	3 cut(s)	63, 129, 784
SfaNI	GCATC	3 cut(s)	379, 540, 546
SfuI	TTCGAA	1 cut(s)	14
Sse9I	AATT	3 cut(s)	203, 319, 417
SsiI	CCGC	8 cut(s)	72, 91, 111, 114, 117, 142, 539, 562
SspMI	CTAG	1 cut(s)	552
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	6 cut(s)	54, 67, 156, 180, 230, 323
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	3 cut(s)	171, 303, 580
TaqI	TCGA	2 cut(s)	14, 51
TasI	AATT	3 cut(s)	203, 319, 417
TauI	GCSGC	3 cut(s)	93, 116, 119
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	3 cut(s)	655, 679, 703
TseI	GCWGC	2 cut(s)	392, 559
Tsp45I	GTSAC	3 cut(s)	655, 679, 703
TspDTI	ATGAA	1 cut(s)	653
TspRI	CASTG	1 cut(s)	609
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.