Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

3739131 .. 3742755

Gene Structure 3625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G053300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAAAAAAGATCAAAAGTTGGTGTTGAAAATGATGCGTTTGATAGGCAAATAGATTGGGAGCTGAGGCCTGGTGGAATGCTTGTCCAAAAGAGAGACATTGGGGATGCCTCTTCTGGGCCTATGATCAAGATCAAGGTTTCTCATGGTTCTTATTACCATGATGTCATTGTCCATGCTCAATCCACATTTGGTGATTTGAAAAGAGTTCTTGCCCATGAGACTGGCTTGGAGCCAAAGGAGCAAAGGTTGTTGTTTACAGGGAAGGAGAAGGAAGATAATGAATGTTTGCACATGGCAGGTGTAAAAGATATGTCTAAGATTATATTACTAGAAGACCCAGCTAGCAAAGAGAAGAAGCTTGAAGAGATGAAGAAAAATCAAGGTGTATTAAAAGCATATGAAGAGGTTGCCAAAGTTAGGGCAGAGGTTGACAAGCTCTCTCAAAAGATTGTTGATTTCGAGGCAACTCTGCTCAGTGGCACCAAGGTTTCAGATAAGGAAATTGGGGTCTTAACAGAGTTGCTCATGGTGGAGTTGCTTAAATTGGATGCAATTGCGGCTGATGGAGAAGCAAAAGTACAGAGGCGGGTTGAGGTTCGTCGTGTGCAGAGCTTTGTCGACACACTCGACAAACTAAAGGCAAGAAACTCTAATCCATTCAGCAATAAGAGCAGCAATGCAGTCTCAGTCACTACAAAACGGGAGAGGTTTGAGTTGGGGGTTGGAAGCCTAAATGCCCCAACCCCATTGCCATCTTCTACCAAAATAACTCAGGATTGGGAATTGTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

266

Amino Acids

29.68

Weight (kDa)

7.76

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	2 cut(s)	560, 589
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	2 cut(s)	117, 420
AgsI	TTSAA	3 cut(s)	29, 202, 365
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	5 cut(s)	64, 344, 361, 439, 615
AluI	AGCT	5 cut(s)	64, 344, 361, 439, 615
Alw26I	GTCTC	3 cut(s)	90, 215, 691
AoxI	GGCC	2 cut(s)	68, 119
ApeKI	GCWGC	1 cut(s)	675
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	206
AsuNHI	GCTAGC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
BbsI	GAAGAC	1 cut(s)	342
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	687
BccI	CCATC	2 cut(s)	560, 763
BciT130I	CCWGG	1 cut(s)	72
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	3 cut(s)	90, 215, 691
BfaI	CTAG	2 cut(s)	332, 345
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	561, 676
BlsI	GCNGC	2 cut(s)	562, 677
Bme1390I	CCNGG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	234, 484
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	3 cut(s)	25, 97, 541
BmtI	GCTAGC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 420
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	2 cut(s)	685, 749
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	112, 556
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	117, 420
BseMI	GCAATG	2 cut(s)	685, 749
BseMII	CTCAG	4 cut(s)	56, 490, 702, 788
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	687
BseYI	CCCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	629
BshFI	GGCC	2 cut(s)	70, 121
BshNI	GGYRCC	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	117, 420
BsmAI	GTCTC	3 cut(s)	90, 215, 691
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	2 cut(s)	70, 121
Bsp143I	GATC	3 cut(s)	11, 126, 132
BspACI	CCGC	2 cut(s)	560, 589
BspANI	GGCC	2 cut(s)	70, 121
BspCNI	CTCAG	4 cut(s)	57, 489, 701, 787
BspLI	GGNNCC	2 cut(s)	234, 484
BspMI	ACCTGC	1 cut(s)	290
BspOI	GCTAGC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	482
BsrDI	GCAATG	2 cut(s)	685, 749
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	3 cut(s)	11, 126, 132
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	72
Bst6I	CTCTTC	3 cut(s)	118, 360, 399
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	5 cut(s)	65, 318, 476, 688, 774
BstF5I	GGATG	2 cut(s)	112, 556
BstKTI	GATC	3 cut(s)	14, 129, 135
BstMAI	GTCTC	3 cut(s)	90, 215, 691
BstMBI	GATC	3 cut(s)	11, 126, 132
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 560, 672
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	687
BstV2I	GAAGAC	1 cut(s)	342
BstXI	CCANNNNNNTGG	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	70, 121
BtsCI	GGATG	2 cut(s)	112, 556
BtsIMutI	CAGTG	1 cut(s)	484
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	6 cut(s)	146, 161, 176, 218, 295, 529
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	5 cut(s)	65, 318, 476, 688, 774
DpnI	GATC	3 cut(s)	13, 128, 134
DpnII	GATC	3 cut(s)	11, 126, 132
Eam1104I	CTCTTC	3 cut(s)	118, 360, 399
EarI	CTCTTC	3 cut(s)	118, 360, 399
Eco130I	CCWWGG	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	6 cut(s)	149, 164, 179, 221, 298, 532
FatI	CATG	6 cut(s)	145, 160, 175, 217, 294, 528
FauI	CCCGC	1 cut(s)	582
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	2 cut(s)	561, 676
FokI	GGATG	2 cut(s)	119, 563
Fsp4HI	GCNGC	2 cut(s)	561, 676
FspBI	CTAG	2 cut(s)	332, 345
GluI	GCNGC	2 cut(s)	561, 676
GsaI	CCCAGC	1 cut(s)	344
HaeIII	GGCC	2 cut(s)	70, 121
Hin1II	CATG	6 cut(s)	149, 164, 179, 221, 298, 532
HincII	GTYRAC	2 cut(s)	433, 622
HindII	GTYRAC	2 cut(s)	433, 622
HindIII	AAGCTT	1 cut(s)	359
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	258, 433, 622
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	2 cut(s)	130, 776
Hpy8I	GTNNAC	3 cut(s)	258, 433, 622
Hpy99I	CGWCG	1 cut(s)	606
HpyAV	CCTTC	2 cut(s)	259, 265
HpyCH4V	TGCA	4 cut(s)	292, 554, 610, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 560, 672
HpyF3I	CTNAG	5 cut(s)	65, 318, 476, 688, 774
Hsp92II	CATG	6 cut(s)	149, 164, 179, 221, 298, 532
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	11, 126, 132
LmnI	GCTCC	3 cut(s)	61, 232, 241
LpnPI	CCDG	8 cut(s)	57, 84, 102, 210, 246, 285, 354, 761
Lsp1109I	GCAGC	1 cut(s)	687
LweI	GCATC	3 cut(s)	25, 97, 541
MaeI	CTAG	2 cut(s)	332, 345
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	3 cut(s)	13, 128, 134
MboI	GATC	3 cut(s)	11, 126, 132
MboII	GAAGA	8 cut(s)	105, 287, 347, 367, 377, 385, 416, 750
MfeI	CAATTG	1 cut(s)	555
MluCI	AATT	4 cut(s)	504, 545, 555, 785
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	8 cut(s)	60, 121, 400, 421, 457, 579, 589, 702
MseI	TTAA	3 cut(s)	392, 515, 543
MspR9I	CCNGG	1 cut(s)	72
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	241, 560, 672
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	3 cut(s)	11, 126, 132
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	6 cut(s)	149, 164, 179, 221, 298, 532
NlaIV	GGNNCC	2 cut(s)	234, 484
NmuCI	GTSAC	1 cut(s)	691
PaqCI	CACCTGC	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	562, 677
Psp6I	CCWGG	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	234, 484
PspPI	GGNCC	1 cut(s)	119
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
SalI	GTCGAC	1 cut(s)	620
SaqAI	TTAA	3 cut(s)	392, 515, 543
SatI	GCNGC	2 cut(s)	561, 676
Sau3AI	GATC	3 cut(s)	11, 126, 132
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	72
SfaNI	GCATC	3 cut(s)	25, 97, 541
Sse9I	AATT	4 cut(s)	504, 545, 555, 785
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	560, 589
SspMI	CTAG	2 cut(s)	332, 345
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	486
TaqI	TCGA	3 cut(s)	462, 621, 630
TasI	AATT	4 cut(s)	504, 545, 555, 785
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	1 cut(s)	563
Tru1I	TTAA	3 cut(s)	392, 515, 543
Tru9I	TTAA	3 cut(s)	392, 515, 543
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	1 cut(s)	675
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	4 cut(s)	17, 297, 386, 417
TspRI	CASTG	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	621
XspI	CTAG	2 cut(s)	332, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.