Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

9749517 .. 9751797

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG120800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAACCGATTCCGAACGCTTCGCCGGTCAACGCTCCGAACGAGGACTTCGACCCGGAGCTCCGACCCGGCGGGATGTGCGTCCAGCGCCGCGACTATGACGACGACTCCGCCGCCGCCCGTGGGCCCAACATCACGATCCGCGTCTATCACGGCTCGGCCCACCACGTCATCAACCTCCCGGCCCACTCCACTTTCGGGGAATTGAAGGGACTTGTTTCAGAGAAGACCGGGGTGAAGCCGGAGGAGCAGAAGCTGTTGTTCAGGGGGAAAGAGAAGGAGGATGAGGAGCATTTAGACACGGCCGGTGTGAGGGATAATTCCAGGGTTATGCTCTTGCAGGAACCGAAAAGGAAAGAGAGGAGCGTCGGGGAGATGAATGAGAGCAATGAGATGCTGAGTGATGCAGCAGAGGCAAAGGCATTTGAAGCAATAGCTGAAGTCAGAGCCGAGGTTGACAGCCTCGCAGACCGGGTTTCTGCTTTGGGTGTGGCTGTCAATGGTGGAACCGAGGTTTCCGATAAGGAGTTTGCTGTATCAACAGAGTTGCTCATGAGGCAGTTGCTGAAACTGGATGGCATCAAAGCGGAAGGAGAAGCTAGGAAGCAGCGGAAGGATGAGGTACGTCGTGTCCAGAACCTTGTGGATACACTGGACACTCTAAAGGCGAAGAACTCCAATCCGATGAACAACAATAGCAATGGTGTGACTTCTCAAAATAGCAATGGTGTGACTCCTCAGAACAGCAATGGTGTGACTCCTCAGAACAGCAACGGTGTCACTTCACAAAATGGCAATGCTGTCTCCGTAACAACCAAATGGGAGACCTTTGACTCCGGCTTGGGTAGCCTGAGTGCCCCAACCCCAATGCCATCTTCCACAGAAGTAACTGAGGACTGGGAGAAGTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

304

Amino Acids

33.09

Weight (kDa)

4.91

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	45 - 116	1e-11	Ubiquitin family
BAG	PF02179	145 - 220	1.6e-18	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	93, 144
AciI	CCGC	8 cut(s)	72, 91, 111, 114, 117, 142, 587, 610
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
AgsI	TTSAA	2 cut(s)	208, 428
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
AluBI	AGCT	4 cut(s)	61, 256, 437, 599
AluI	AGCT	4 cut(s)	61, 256, 437, 599
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	808, 818
AlwI	GGATC	1 cut(s)	133
AlwNI	CAGNNNCTG	2 cut(s)	256, 565
AoxI	GGCC	4 cut(s)	125, 159, 183, 303
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	407, 607
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	4 cut(s)	125, 126, 160, 184
AsuC2I	CCSGG	5 cut(s)	56, 69, 182, 232, 473
AsuHPI	GGTGA	1 cut(s)	247
BaeGI	GKGCMC	2 cut(s)	129, 859
BanII	GRGCYC	2 cut(s)	63, 129
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	419, 619
BccI	CCATC	2 cut(s)	569, 880
BceAI	ACGGC	2 cut(s)	169, 318
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	640
BcnI	CCSGG	5 cut(s)	56, 69, 182, 232, 473
BcoDI	GTCTC	2 cut(s)	808, 818
BfaI	CTAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	640
BisI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
BlsI	GCNGC	5 cut(s)	92, 115, 118, 409, 609
Bme1390I	CCNGG	6 cut(s)	56, 69, 182, 232, 325, 473
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	4 cut(s)	125, 126, 160, 184
BmiI	GGNNCC	4 cut(s)	6, 127, 345, 508
BmrFI	CCNGG	6 cut(s)	56, 69, 182, 232, 325, 473
BmrI	ACTGGG	1 cut(s)	907
BmsI	GCATC	3 cut(s)	384, 394, 588
BmuI	ACTGGG	1 cut(s)	907
BpiI	GAAGAC	1 cut(s)	233
BpuMI	CCSGG	5 cut(s)	56, 69, 182, 232, 473
BsaI	GGTCTC	1 cut(s)	818
BsaJI	CCNNGG	5 cut(s)	121, 231, 324, 450, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 198, 312
Bse118I	RCCGGY	2 cut(s)	25, 305
Bse1I	ACTGG	3 cut(s)	576, 657, 902
Bse3DI	GCAATG	5 cut(s)	394, 706, 730, 754, 802
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	5 cut(s)	121, 231, 324, 450, 510
BseGI	GGATG	4 cut(s)	81, 289, 580, 622
BseLI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
BseMI	GCAATG	5 cut(s)	394, 706, 730, 754, 802
BseMII	CTCAG	5 cut(s)	389, 752, 776, 842, 882
BseNI	ACTGG	3 cut(s)	576, 657, 902
BseRI	GAGGAG	5 cut(s)	260, 302, 376, 726, 750
BseSI	GKGCMC	2 cut(s)	129, 859
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	419, 619
Bsh1236I	CGCG	2 cut(s)	93, 144
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	4 cut(s)	127, 161, 185, 305
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	9 cut(s)	26, 56, 69, 182, 231, 242, 306, 472, 837
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
BsmAI	GTCTC	2 cut(s)	808, 818
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	4 cut(s)	127, 161, 185, 305
Bso31I	GGTCTC	1 cut(s)	818
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	3 cut(s)	63, 129, 859
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	8 cut(s)	72, 91, 111, 114, 117, 142, 587, 610
BspANI	GGCC	4 cut(s)	127, 161, 185, 305
BspCNI	CTCAG	5 cut(s)	390, 751, 775, 843, 883
BspFNI	CGCG	2 cut(s)	93, 144
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	4 cut(s)	6, 127, 345, 508
BspPI	GGATC	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	818
BsrDI	GCAATG	5 cut(s)	394, 706, 730, 754, 802
BsrFI	RCCGGY	2 cut(s)	25, 305
BsrI	ACTGG	3 cut(s)	576, 657, 902
BssAI	RCCGGY	2 cut(s)	25, 305
BssECI	CCNNGG	5 cut(s)	121, 231, 324, 450, 510
BssMI	GATC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	776
BstDEI	CTNAG	5 cut(s)	398, 738, 762, 851, 891
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	4 cut(s)	81, 289, 580, 622
BstFNI	CGCG	2 cut(s)	93, 144
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	808, 818
BstMBI	GATC	1 cut(s)	138
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 413, 428, 556, 846
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	6 cut(s)	54, 67, 180, 230, 323, 471
BstSLI	GKGCMC	2 cut(s)	129, 859
BstUI	CGCG	2 cut(s)	93, 144
BstV1I	GCAGC	2 cut(s)	419, 619
BstV2I	GAAGAC	1 cut(s)	233
BstZI	CGGCCG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	4 cut(s)	127, 161, 185, 305
BtgI	CCRYGG	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	4 cut(s)	81, 289, 580, 622
BtsIMutI	CAGTG	1 cut(s)	650
CaiI	CAGNNNCTG	2 cut(s)	256, 565
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	25, 305
Cfr13I	GGNCC	4 cut(s)	125, 126, 160, 184
CseI	GACGC	3 cut(s)	70, 133, 355
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	5 cut(s)	398, 738, 762, 851, 891
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	303
EagI	CGGCCG	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	63, 129
Eco31I	GGTCTC	1 cut(s)	818
Eco52I	CGGCCG	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	323
EcoT38I	GRGCYC	2 cut(s)	63, 129
FaeI	CATG	1 cut(s)	556
FaiI	YATR	3 cut(s)	99, 332, 554
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	552
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
FokI	GGATG	4 cut(s)	88, 296, 587, 629
FriOI	GRGCYC	2 cut(s)	63, 129
Fsp4HI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	4 cut(s)	127, 161, 185, 305
HapII	CCGG	9 cut(s)	26, 56, 69, 182, 231, 242, 306, 472, 837
HgaI	GACGC	3 cut(s)	70, 133, 355
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	556
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	2 cut(s)	31, 457
HindII	GTYRAC	2 cut(s)	31, 457
HinfI	GANTC	5 cut(s)	10, 107, 733, 757, 833
HpaII	CCGG	9 cut(s)	26, 56, 69, 182, 231, 242, 306, 472, 837
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	31, 457
Hpy188I	TCNGA	9 cut(s)	15, 39, 65, 223, 446, 520, 684, 741, 765
Hpy188III	TCNNGA	3 cut(s)	136, 553, 634
Hpy8I	GTNNAC	2 cut(s)	31, 457
Hpy99I	CGWCG	3 cut(s)	107, 371, 630
HpyAV	CCTTC	4 cut(s)	202, 271, 584, 607
HpyCH4III	ACNGT	1 cut(s)	776
HpyCH4IV	ACGT	2 cut(s)	168, 625
HpyCH4V	TGCA	2 cut(s)	340, 407
HpyF10VI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 413, 428, 556, 846
HpyF3I	CTNAG	5 cut(s)	398, 738, 762, 851, 891
HpySE526I	ACGT	2 cut(s)	168, 625
Hsp92II	CATG	1 cut(s)	556
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	6 cut(s)	40, 58, 66, 247, 289, 363
Lsp1109I	GCAGC	2 cut(s)	419, 619
LweI	GCATC	3 cut(s)	384, 394, 588
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	168, 625
MaeIII	GTNAC	6 cut(s)	706, 730, 754, 778, 808, 886
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	3 cut(s)	238, 682, 867
MhlI	GDGCHC	3 cut(s)	63, 129, 859
MluCI	AATT	2 cut(s)	203, 319
MlyI	GAGTC	4 cut(s)	101, 727, 751, 827
MmeI	TCCRAC	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	9 cut(s)	26, 56, 69, 182, 231, 242, 306, 472, 837
MspR9I	CCNGG	6 cut(s)	56, 69, 182, 232, 325, 473
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	2 cut(s)	93, 144
MwoI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 413, 428, 556, 846
NciI	CCSGG	5 cut(s)	56, 69, 182, 232, 473
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	4 cut(s)	6, 127, 345, 508
NmeAIII	GCCGAG	2 cut(s)	137, 475
NmuCI	GTSAC	4 cut(s)	706, 730, 754, 778
PagI	TCATGA	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 48
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	5 cut(s)	92, 115, 118, 409, 609
PleI	GAGTC	4 cut(s)	101, 727, 751, 827
PpsI	GAGTC	4 cut(s)	101, 727, 751, 827
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	6, 127, 345, 508
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	4 cut(s)	125, 126, 160, 184
PstNI	CAGNNNCTG	2 cut(s)	256, 565
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	4 cut(s)	125, 126, 160, 184
SchI	GAGTC	4 cut(s)	101, 727, 751, 827
ScrFI	CCNGG	6 cut(s)	56, 69, 182, 232, 325, 473
SduI	GDGCHC	3 cut(s)	63, 129, 859
SfaNI	GCATC	3 cut(s)	384, 394, 588
Sse9I	AATT	2 cut(s)	203, 319
SsiI	CCGC	8 cut(s)	72, 91, 111, 114, 117, 142, 587, 610
SspMI	CTAG	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	6 cut(s)	54, 67, 180, 230, 323, 471
TaaI	ACNGT	1 cut(s)	776
TaiI	ACGT	2 cut(s)	171, 628
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	203, 319
TauI	GCSGC	3 cut(s)	93, 116, 119
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	4 cut(s)	706, 730, 754, 778
TseI	GCWGC	2 cut(s)	407, 607
Tsp45I	GTSAC	4 cut(s)	706, 730, 754, 778
TspDTI	ATGAA	2 cut(s)	392, 701
TspGWI	ACGGA	1 cut(s)	796
TspRI	CASTG	1 cut(s)	657
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.