Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

3988058 .. 3990027

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAAAAAAGATCAAGAGCTGGTGTGGGAAATGATGGGTTAAATAGGAAGATAGATTGGGAGCTGAGGCCTGGTGGAATGCTTGTTCAAAAGAGAGACACTGGGGATGCCAATTCTGGGGTTATGATCAAGATCAAGGTTTCTCATGGTTCATATTACCATGATCTCATTGTCCATGCTCAATCCACTTTTGGTGATCTGAAAAGAGTTCTTGCCCATGACACTGGCTTGGAGCCAAAGGAGCAAAGATTGTTGTTCAGAGGGAAAGAGAAGGAAGATAATGAATGTCTGCACATTGCTGGCGTGAAAGATATGTCGAAGATTGTATTACTAGAGGACCCAGCTAGCAAAGAGAAGAAGCTTGAGGAGATGAAGAAAAATCAAGGCATATTGAAAGCCTATGAGCAGGTTGCCGAAGTTAGAGCACAGGTTGACAAGCTCTCTCAAAAGGTTGTTGATTTGGAGACAAATCTGCTAAGTGGCACCACGGTTTCAGATAAGGAGATTGTGGTCTTAACGGAGTTACTCATGGTGGAGTTATTTAGATTGGATTCGATTGTAGCTGATGGAGAAGCAAAAGTGCAGAGGCGGGTTGAGGTTCGTCGTGTGCAGAGCTTTGTTGACACGCTCGACAATCTGAAGGCAAGAAACCCTAATCCATTCAGCAAGAAGAGTATCAACGCGGTCTCGGTCACTACAAAATGGGAGAGGTTTGAGTTGGGGGTTGGAAGCCTGCATGCCCCAACCCCATTGCCATCTTCTACCAAAATAACTCAGGATTGGGAACTGTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

266

Amino Acids

29.82

Weight (kDa)

8.77

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	43 - 111	3.6e-08	Ubiquitin family
BAG	PF02179	137 - 213	1.6e-14	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	482
AccII	CGCG	1 cut(s)	683
AciI	CCGC	2 cut(s)	589, 683
AcuI	CTGAAG	1 cut(s)	659
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	89, 394
AjnI	CCWGG	1 cut(s)	70
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	7 cut(s)	20, 64, 344, 361, 439, 563, 615
AluI	AGCT	7 cut(s)	20, 64, 344, 361, 439, 563, 615
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	3 cut(s)	90, 458, 691
AoxI	GGCC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	206
AsuNHI	GCTAGC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	427
BbvCI	CCTCAGC	1 cut(s)	65
BccI	CCATC	3 cut(s)	29, 560, 763
BciT130I	CCWGG	1 cut(s)	72
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	3 cut(s)	90, 458, 691
BfaI	CTAG	2 cut(s)	332, 345
BfuAI	ACCTGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	3 cut(s)	234, 339, 484
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	106, 229
Bse3DI	GCAATG	2 cut(s)	294, 749
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	2 cut(s)	294, 749
BseMII	CTCAG	2 cut(s)	56, 788
BseNI	ACTGG	2 cut(s)	106, 229
BseRI	GAGGAG	1 cut(s)	380
BseYI	CCCAGC	1 cut(s)	340
BsgI	GTGCAG	3 cut(s)	275, 602, 629
Bsh1236I	CGCG	1 cut(s)	683
BshFI	GGCC	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	3 cut(s)	90, 458, 691
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	691
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	11, 126, 132, 163, 196
BspACI	CCGC	2 cut(s)	589, 683
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	57, 787
BspFNI	CGCG	1 cut(s)	683
BspLI	GGNNCC	3 cut(s)	234, 339, 484
BspMI	ACCTGC	1 cut(s)	397
BspOI	GCTAGC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	691
BsrDI	GCAATG	2 cut(s)	294, 749
BsrI	ACTGG	2 cut(s)	106, 229
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	5 cut(s)	11, 126, 132, 163, 196
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	490, 789
Bst6I	CTCTTC	1 cut(s)	665
BstC8I	GCNNGC	4 cut(s)	301, 346, 734, 738
BstDEI	CTNAG	3 cut(s)	65, 476, 774
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	683
BstKTI	GATC	5 cut(s)	14, 129, 135, 166, 199
BstMAI	GTCTC	3 cut(s)	90, 458, 691
BstMBI	GATC	5 cut(s)	11, 126, 132, 163, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	683
BstXI	CCANNNNNNTGG	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	70
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	99, 222
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	4 cut(s)	301, 346, 734, 738
Cfr13I	GGNCC	1 cut(s)	337
CviAII	CATG	6 cut(s)	146, 161, 176, 218, 529, 737
DdeI	CTNAG	3 cut(s)	65, 476, 774
DpnI	GATC	5 cut(s)	13, 128, 134, 165, 198
DpnII	GATC	5 cut(s)	11, 126, 132, 163, 196
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
Eco147I	AGGCCT	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	659
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	70
FaeI	CATG	6 cut(s)	149, 164, 179, 221, 532, 740
FatI	CATG	6 cut(s)	145, 160, 175, 217, 528, 736
FauI	CCCGC	1 cut(s)	582
FbaI	TGATCA	1 cut(s)	126
FokI	GGATG	1 cut(s)	119
FspBI	CTAG	2 cut(s)	332, 345
GsaI	CCCAGC	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	70
Hin1II	CATG	6 cut(s)	149, 164, 179, 221, 532, 740
HincII	GTYRAC	2 cut(s)	433, 622
HindII	GTYRAC	2 cut(s)	433, 622
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	1 cut(s)	551
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	433, 622
Hpy188I	TCNGA	4 cut(s)	201, 260, 496, 639
Hpy188III	TCNNGA	3 cut(s)	15, 130, 776
Hpy8I	GTNNAC	2 cut(s)	433, 622
Hpy99I	CGWCG	1 cut(s)	606
HpyAV	CCTTC	2 cut(s)	265, 634
HpyCH4III	ACNGT	2 cut(s)	490, 789
HpyCH4V	TGCA	4 cut(s)	292, 583, 610, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	3 cut(s)	65, 476, 774
Hsp92II	CATG	6 cut(s)	149, 164, 179, 221, 532, 740
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	11, 126, 132, 163, 196
LmnI	GCTCC	3 cut(s)	61, 232, 241
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	332, 345
MaeIII	GTNAC	2 cut(s)	522, 691
MalI	GATC	5 cut(s)	13, 128, 134, 165, 198
MboI	GATC	5 cut(s)	11, 126, 132, 163, 196
MboII	GAAGA	7 cut(s)	61, 287, 331, 367, 385, 682, 750
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	7 cut(s)	60, 254, 328, 358, 579, 589, 702
MseI	TTAA	2 cut(s)	41, 515
MspR9I	CCNGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	5 cut(s)	11, 126, 132, 163, 196
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	6 cut(s)	149, 164, 179, 221, 532, 740
NlaIV	GGNNCC	3 cut(s)	234, 339, 484
NmuCI	GTSAC	1 cut(s)	691
NspI	RCATGY	1 cut(s)	740
PaeI	GCATGC	1 cut(s)	740
PceI	AGGCCT	1 cut(s)	70
PctI	GAATGC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	551
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	234, 339, 484
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	41, 515
Sau3AI	GATC	5 cut(s)	11, 126, 132, 163, 196
Sau96I	GGNCC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	740
Sse9I	AATT	1 cut(s)	112
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	589, 683
SspMI	CTAG	2 cut(s)	332, 345
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	490, 789
TaqI	TCGA	3 cut(s)	317, 554, 630
TaqII	GACCGA	1 cut(s)	679
TasI	AATT	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	2 cut(s)	41, 515
Tru9I	TTAA	2 cut(s)	41, 515
TscAI	CASTG	2 cut(s)	106, 229
TseFI	GTSAC	1 cut(s)	691
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	4 cut(s)	17, 141, 297, 386
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	106, 229
VpaK11BI	GGWCC	1 cut(s)	337
XceI	RCATGY	1 cut(s)	740
XspI	CTAG	2 cut(s)	332, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.