Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Forward (+)

18803477 .. 18805692

Gene Structure 2216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGATGGTGAAAAACAATCCGAACCCGAATCCGAAGGCGCTGGTCCAGAGGCGGGAAGATGAGGACGAGGCGGCAGTGGCTGCTGGCGTTGGTGCTTCCGCCTCCTCTCGTGGGCCCATGATCAAGATCGACGTCGTTCTCGGCCCTGGCAACGGGCCCCGCTACGAGCTCTTCCTCCCTGCCCACTCCACTTTCGGGGATATGAAGAAACATGTTGCACAGAAGACTAATTTGGAGCCAGAGGCGCAGAGACTCTTTTTCAGGGGGATGGAGAAGGCAGATGAGGAGCATCTGGACATTGCCGGTGTGAAGAATAATTCGAAGGTGCTGCTTCTGGAAGCCCGAAAGGAGAGTAAGGTTGAGGAGGTAAATCAAAGCAATGAGATGCCAGTCGGTGCTGGAGAAGTTGGAGTCAACAGCAAAAAGATGCCAACCAGTGGTGGAGATGTTGGAGGCAAAAGCAATGTCATGTCAAAGGCTTCTCAAGCGATTGCTGAAGTCAGAGCCGAGGTTGATAAGCTCGCGGAGAGGGTTACTGCCTTGGAAGTGGCTGTGGCTGGCAGGAACGAGGTTTCCGATAAAGAATTTGTTGTGCCAACAGAGTTGCTCATGAGGCAGTTGCTGAAATTGGATGGCATTCACGCTGAAGGAGAAGAAAAAATGCAACGCAAGGCAGAGGTGCGACGTGTCCAGAACTTTGTGGATGCATTGGATGCTCTAAAGGTGAGGAACAGCAATCCAGTTAACAAGAGTAGCAATGCTGTCACAGTAACAACCGAGTGGGAGACCTTTGACTCTGGAGTCGGATCCCAGAATCCCCCAACGTCAACGCCAGAGCCATCTTCAACAGAACCAAATCAGGAATGGGAACACTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

294

Amino Acids

31.9

Weight (kDa)

5.3

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	54 - 111	5.3e-07	Ubiquitin family
BAG	PF02179	164 - 240	7.7e-17	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	800
AatII	GACGTC	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccII	CGCG	1 cut(s)	524
AciI	CCGC	5 cut(s)	52, 71, 99, 160, 524
AclWI	GGATC	2 cut(s)	801, 814
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	2 cut(s)	516, 666
AcyI	GRCGYC	1 cut(s)	132
AfiI	CCNNNNNNNGG	5 cut(s)	52, 111, 152, 195, 437
AflIII	ACRYGT	2 cut(s)	211, 685
AgsI	TTSAA	1 cut(s)	846
AjiI	CACGTC	1 cut(s)	686
AjnI	CCWGG	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AloI	GAACNNNNNNTCC	2 cut(s)	557, 589
AluBI	AGCT	2 cut(s)	169, 520
AluI	AGCT	2 cut(s)	169, 520
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	244, 779
AlwI	GGATC	2 cut(s)	801, 814
AlwNI	CAGNNNCTG	2 cut(s)	80, 622
AoxI	GGCC	3 cut(s)	113, 142, 155
ApaI	GGGCCC	2 cut(s)	117, 159
ApeKI	GCWGC	2 cut(s)	80, 328
ApoI	RAATTY	1 cut(s)	584
ArsI	GACNNNNNNTTYG	2 cut(s)	450, 482
AspLEI	GCGC	2 cut(s)	40, 247
AspS9I	GGNCC	6 cut(s)	43, 113, 114, 143, 155, 156
AsuHPI	GGTGA	2 cut(s)	19, 736
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	2 cut(s)	117, 159
BamHI	GGATCC	1 cut(s)	806
BanII	GRGCYC	3 cut(s)	117, 159, 171
BauI	CACGAG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	67, 315
BccI	CCATC	3 cut(s)	262, 626, 847
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	244, 779
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	3 cut(s)	72, 81, 329
BlsI	GCNGC	3 cut(s)	73, 82, 330
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	686
BmgT120I	GGNCC	6 cut(s)	43, 113, 114, 143, 155, 156
BmiI	GGNNCC	5 cut(s)	115, 157, 158, 237, 808
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	5 cut(s)	298, 375, 417, 694, 703
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	2 cut(s)	420, 819
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	3 cut(s)	145, 507, 540
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 111, 152, 195, 437
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	3 cut(s)	389, 435, 740
Bse3DI	GCAATG	4 cut(s)	297, 385, 469, 763
Bse8I	GATNNNNATC	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	3 cut(s)	145, 507, 540
BseGI	GGATG	4 cut(s)	273, 637, 709, 718
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	5 cut(s)	52, 111, 152, 195, 437
BseMI	GCAATG	4 cut(s)	297, 385, 469, 763
BseNI	ACTGG	3 cut(s)	389, 435, 740
BseRI	GAGGAG	3 cut(s)	94, 299, 377
BseSI	GKGCMC	2 cut(s)	117, 159
BseXI	GCAGC	2 cut(s)	67, 315
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	3 cut(s)	115, 144, 157
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	5 cut(s)	52, 111, 152, 195, 437
BsmAI	GTCTC	2 cut(s)	244, 779
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	3 cut(s)	115, 144, 157
Bso31I	GGTCTC	1 cut(s)	779
Bsp119I	TTCGAA	1 cut(s)	320
Bsp120I	GGGCCC	2 cut(s)	113, 155
Bsp1286I	GDGCHC	3 cut(s)	117, 159, 171
Bsp143I	GATC	3 cut(s)	120, 126, 806
BspACI	CCGC	5 cut(s)	52, 71, 99, 160, 524
BspANI	GGCC	3 cut(s)	115, 144, 157
BspFNI	CGCG	1 cut(s)	524
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	5 cut(s)	115, 157, 158, 237, 808
BspPI	GGATC	2 cut(s)	801, 814
BspQI	GCTCTTC	1 cut(s)	176
BspT104I	TTCGAA	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	779
BsrDI	GCAATG	4 cut(s)	297, 385, 469, 763
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	389, 435, 740
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	3 cut(s)	145, 507, 540
BssMI	GATC	3 cut(s)	120, 126, 806
BssNI	GRCGYC	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	769
Bst6I	CTCTTC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	2 cut(s)	80, 713
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	85, 522, 559
BstF5I	GGATG	4 cut(s)	273, 637, 709, 718
BstFNI	CGCG	1 cut(s)	524
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 247
BstKTI	GATC	3 cut(s)	123, 129, 809
BstMAI	GTCTC	2 cut(s)	244, 779
BstMBI	GATC	3 cut(s)	120, 126, 806
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 80, 244, 485, 613, 713
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	145
BstSLI	GKGCMC	2 cut(s)	117, 159
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	2 cut(s)	67, 315
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	806
BstYI	RGATCY	1 cut(s)	806
BsuRI	GGCC	3 cut(s)	115, 144, 157
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	4 cut(s)	273, 637, 709, 718
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 442
Cac8I	GCNNGC	3 cut(s)	85, 522, 559
CaiI	CAGNNNCTG	2 cut(s)	80, 622
CciI	TCATGA	1 cut(s)	609
CfoI	GCGC	2 cut(s)	40, 247
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	6 cut(s)	43, 113, 114, 143, 155, 156
CviAII	CATG	4 cut(s)	118, 212, 469, 610
DpnI	GATC	3 cut(s)	122, 128, 808
DpnII	GATC	3 cut(s)	120, 126, 806
DrdI	GACNNNNNNGTC	1 cut(s)	800
DseDI	GACNNNNNNGTC	1 cut(s)	800
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	540
Eco24I	GRGCYC	3 cut(s)	117, 159, 171
Eco31I	GGTCTC	1 cut(s)	779
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	516, 666
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	3 cut(s)	117, 159, 171
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	4 cut(s)	121, 215, 472, 613
FaiI	YATR	5 cut(s)	119, 203, 213, 470, 611
FatI	CATG	4 cut(s)	117, 211, 468, 609
FauI	CCCGC	2 cut(s)	45, 167
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	72, 81, 329
FokI	GGATG	4 cut(s)	280, 644, 716, 725
FriOI	GRGCYC	3 cut(s)	117, 159, 171
Fsp4HI	GCNGC	3 cut(s)	72, 81, 329
GlaI	GCGC	2 cut(s)	39, 246
GluI	GCNGC	3 cut(s)	72, 81, 329
GsuI	CTGGAG	2 cut(s)	420, 819
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	115, 144, 157
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	2 cut(s)	40, 247
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	121, 215, 472, 613
Hin6I	GCGC	2 cut(s)	38, 245
HinP1I	GCGC	2 cut(s)	38, 245
HincII	GTYRAC	3 cut(s)	415, 745, 828
HindII	GTYRAC	3 cut(s)	415, 745, 828
HinfI	GANTC	6 cut(s)	28, 252, 411, 794, 801, 814
HpaI	GTTAAC	1 cut(s)	745
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	2 cut(s)	19, 736
Hpy166II	GTNNAC	3 cut(s)	415, 745, 828
Hpy188I	TCNGA	5 cut(s)	21, 33, 503, 577, 806
Hpy188III	TCNNGA	8 cut(s)	46, 124, 293, 335, 610, 691, 798, 860
Hpy8I	GTNNAC	3 cut(s)	415, 745, 828
Hpy99I	CGWCG	3 cut(s)	134, 137, 687
HpyAV	CCTTC	4 cut(s)	28, 268, 316, 641
HpyCH4III	ACNGT	1 cut(s)	769
HpyCH4IV	ACGT	3 cut(s)	132, 685, 824
HpyCH4V	TGCA	3 cut(s)	218, 664, 707
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 80, 244, 485, 613, 713
HpySE526I	ACGT	3 cut(s)	132, 685, 824
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	121, 215, 472, 613
HspAI	GCGC	2 cut(s)	38, 245
Ksp22I	TGATCA	1 cut(s)	120
KspAI	GTTAAC	1 cut(s)	745
Kzo9I	GATC	3 cut(s)	120, 126, 806
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	235, 286
Lsp1109I	GCAGC	2 cut(s)	67, 315
LweI	GCATC	5 cut(s)	298, 375, 417, 694, 703
MaeII	ACGT	3 cut(s)	132, 685, 824
MaeIII	GTNAC	3 cut(s)	532, 763, 769
MalI	GATC	3 cut(s)	122, 128, 808
MboI	GATC	3 cut(s)	120, 126, 806
MboII	GAAGA	7 cut(s)	68, 163, 217, 235, 322, 665, 834
MflI	RGATCY	1 cut(s)	806
MhlI	GDGCHC	3 cut(s)	117, 159, 171
MluCI	AATT	4 cut(s)	229, 316, 584, 626
MlyI	GAGTC	4 cut(s)	246, 420, 788, 810
MmeI	TCCRAC	3 cut(s)	388, 430, 784
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	1 cut(s)	744
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	6 cut(s)	77, 80, 244, 485, 613, 713
NdeII	GATC	3 cut(s)	120, 126, 806
NlaIII	CATG	4 cut(s)	121, 215, 472, 613
NlaIV	GGNNCC	5 cut(s)	115, 157, 158, 237, 808
NmeAIII	GCCGAG	2 cut(s)	120, 532
NmuCI	GTSAC	1 cut(s)	763
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	215
NspV	TTCGAA	1 cut(s)	320
PagI	TCATGA	1 cut(s)	609
PciI	ACATGT	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	573
PctI	GAATGC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	28, 814
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	73, 82, 330
PleI	GAGTC	4 cut(s)	246, 419, 788, 809
PpsI	GAGTC	4 cut(s)	246, 419, 788, 809
PscI	ACATGT	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	5 cut(s)	115, 157, 158, 237, 808
PspOMI	GGGCCC	2 cut(s)	113, 155
PspPI	GGNCC	6 cut(s)	43, 113, 114, 143, 155, 156
PstNI	CAGNNNCTG	2 cut(s)	80, 622
PsuI	RGATCY	1 cut(s)	806
SacI	GAGCTC	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	3 cut(s)	72, 81, 329
Sau3AI	GATC	3 cut(s)	120, 126, 806
Sau96I	GGNCC	6 cut(s)	43, 113, 114, 143, 155, 156
SchI	GAGTC	4 cut(s)	246, 420, 788, 810
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	3 cut(s)	117, 159, 171
SfaNI	GCATC	5 cut(s)	298, 375, 417, 694, 703
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	4 cut(s)	229, 316, 584, 626
SsiI	CCGC	5 cut(s)	52, 71, 99, 160, 524
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	769
TaiI	ACGT	3 cut(s)	135, 688, 827
TaqI	TCGA	3 cut(s)	129, 320, 876
TasI	AATT	4 cut(s)	229, 316, 584, 626
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	28, 814
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	2 cut(s)	81, 442
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	2 cut(s)	80, 328
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	81, 442
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	861
ZraI	GACGTC	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.