Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Forward (+)

26306485 .. 26309258

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G281800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGTGAAAAAGAACCCGAACCTGAACCCAAAAGTGCCAGTACCCGTTCAGAACGACGAGATCGACTGGGAGATGAGGCCAGGTGGCATGCTTGTCCAGAGGCGAGAAGACGGCGATGACGCCTCTGCTGCTTCTGCTTCCGCCTCCTCCCGTGGGCCCATGATCAAGATCGACGTCGTCCACGGCCCAGCCCACCAGGCCCAATACGAGCTCTTTGTTCCTGCTCACTCCACTTTCGGGGATGTGAAGATACATCTTGCACAGAAGACTGGTTTGCAGCCAAGTGCTCAGAAGCTCTTTTTCAGGGGGAAAGAGAAGGAGGATGAGGAGCAGTTGCACATTGCGGGTGTGAAGGATAATTCCAAGGTTCTGCTTATGGAGGACCGGAAACCCGAAGAGAAGAAGGTTGAAGAGTTGAGGGAAAGCAACGCTGGAGAGGTTGGAGGCAATAGCAATGCTGATGAGATTGGAGTCAATAGCAGTGACATGTCAAAAGCTTTTCAAGCGATTGCTGAAGTCAGAGCTGAGGTCGACAAGCTCTCGGATAGGGTTGCTGCTTTGGAAGTGGCTGTTGGTGGGGGCACCAAGGTTTCCGATAAAGAATTTGCCACATCAACAGAGCTGCTCATGAGGCAGTTGCTGAAATTGGACGGCATTAAAGCAGATGGGGAAGCAAAAATGCAACGGAAGGCAGAGGTACGACGCGTCCAGCACTTTGTGGATGCACTGGACACTCTGAAGGTGAGGAACAGCAATCCATTCAACAACAGCAGCAATGCTGCCTCAGTAACAACCAAATGGGAGACCTTTGACTCTGGAGTGGGATGCCTGAGTGCCCCAACCCCAATGCCATCTTCAACAGAAGTAAATCAGGACTGGGAACACTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

298

Amino Acids

32.52

Weight (kDa)

5.33

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	531
AccII	CGCG	1 cut(s)	705
AciI	CCGC	2 cut(s)	141, 344
AcsI	RAATTY	1 cut(s)	602
AcuI	CTGAAG	2 cut(s)	534, 758
AcyI	GRCGYC	2 cut(s)	120, 174
AdeI	CACNNNGTG	1 cut(s)	718
AfaI	GTAC	2 cut(s)	42, 699
AfiI	CCNNNNNNNGG	2 cut(s)	153, 237
AflIII	ACRYGT	2 cut(s)	486, 703
AgsI	TTSAA	4 cut(s)	410, 503, 763, 858
AjnI	CCWGG	2 cut(s)	79, 195
AjuI	GAANNNNNNNTTGG	4 cut(s)	555, 587, 838, 870
AluBI	AGCT	6 cut(s)	211, 295, 497, 524, 538, 622
AluI	AGCT	6 cut(s)	211, 295, 497, 524, 538, 622
Alw21I	GWGCWC	2 cut(s)	213, 289
Alw26I	GTCTC	1 cut(s)	797
AlwNI	CAGNNNCTG	1 cut(s)	640
AoxI	GGCC	4 cut(s)	77, 155, 184, 198
ApaI	GGGCCC	1 cut(s)	159
ApeKI	GCWGC	6 cut(s)	128, 277, 554, 622, 771, 779
ApoI	RAATTY	1 cut(s)	602
AspS9I	GGNCC	5 cut(s)	155, 156, 185, 199, 382
AsuHPI	GGTGA	2 cut(s)	16, 754
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	3 cut(s)	159, 584, 838
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	2 cut(s)	159, 213
BbsI	GAAGAC	2 cut(s)	114, 272
Bbv12I	GWGCWC	2 cut(s)	213, 289
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	6 cut(s)	115, 289, 541, 609, 766, 783
BccI	CCATC	2 cut(s)	659, 859
BceAI	ACGGC	3 cut(s)	127, 199, 667
BciT130I	CCWGG	2 cut(s)	81, 197
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	797
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	6 cut(s)	129, 278, 555, 623, 772, 780
BlsI	GCNGC	6 cut(s)	130, 279, 556, 624, 773, 781
Bme1390I	CCNGG	2 cut(s)	81, 197
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	5 cut(s)	155, 156, 185, 199, 382
BmiI	GGNNCC	2 cut(s)	157, 583
BmrFI	CCNGG	2 cut(s)	81, 197
BmrI	ACTGGG	2 cut(s)	76, 886
BmsI	GCATC	2 cut(s)	712, 815
BmuI	ACTGGG	2 cut(s)	76, 886
BpiI	GAAGAC	2 cut(s)	114, 272
BpmI	CTGGAG	2 cut(s)	453, 837
Bpu10I	CCTNAGC	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	120, 174
BsaI	GGTCTC	1 cut(s)	797
BsaJI	CCNNGG	4 cut(s)	151, 181, 363, 585
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 237
Bse1I	ACTGG	5 cut(s)	38, 71, 274, 732, 881
Bse3DI	GCAATG	3 cut(s)	339, 460, 781
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	81, 197
BseDI	CCNNGG	4 cut(s)	151, 181, 363, 585
BseGI	GGATG	4 cut(s)	247, 328, 727, 830
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	153, 237
BseMI	GCAATG	3 cut(s)	339, 460, 781
BseMII	CTCAG	4 cut(s)	302, 516, 798, 821
BseNI	ACTGG	5 cut(s)	38, 71, 274, 732, 881
BseRI	GAGGAG	2 cut(s)	136, 341
BseSI	GKGCMC	3 cut(s)	159, 584, 838
BseXI	GCAGC	6 cut(s)	115, 289, 541, 609, 766, 783
BseYI	CCCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	705
BshFI	GGCC	4 cut(s)	79, 157, 186, 200
BshNI	GGYRCC	1 cut(s)	581
BsiHKAI	GWGCWC	2 cut(s)	213, 289
BsiSI	CCGG	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	153, 237
BsmAI	GTCTC	1 cut(s)	797
BsnI	GGCC	4 cut(s)	79, 157, 186, 200
Bso31I	GGTCTC	1 cut(s)	797
Bsp120I	GGGCCC	1 cut(s)	155
Bsp1286I	GDGCHC	5 cut(s)	159, 213, 289, 584, 838
Bsp143I	GATC	3 cut(s)	60, 162, 168
BspACI	CCGC	2 cut(s)	141, 344
BspANI	GGCC	4 cut(s)	79, 157, 186, 200
BspCNI	CTCAG	4 cut(s)	301, 517, 797, 822
BspFNI	CGCG	1 cut(s)	705
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	157, 583
BspT107I	GGYRCC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	797
BsrDI	GCAATG	3 cut(s)	339, 460, 781
BsrI	ACTGG	5 cut(s)	38, 71, 274, 732, 881
BssECI	CCNNGG	4 cut(s)	151, 181, 363, 585
BssMI	GATC	3 cut(s)	60, 162, 168
BssNI	GRCGYC	2 cut(s)	120, 174
BssT1I	CCWWGG	2 cut(s)	363, 585
Bst2UI	CCWGG	2 cut(s)	81, 197
Bst6I	CTCTTC	2 cut(s)	390, 405
BstACI	GRCGYC	2 cut(s)	120, 174
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	4 cut(s)	288, 525, 784, 830
BstDSI	CCRYGG	2 cut(s)	151, 181
BstF5I	GGATG	4 cut(s)	247, 328, 727, 830
BstFNI	CGCG	1 cut(s)	705
BstKTI	GATC	3 cut(s)	63, 165, 171
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	3 cut(s)	60, 162, 168
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 134, 197, 503, 631
BstNI	CCWGG	2 cut(s)	81, 197
BstNSI	RCATGY	2 cut(s)	91, 490
BstSCI	CCNGG	2 cut(s)	79, 195
BstSLI	GKGCMC	3 cut(s)	159, 584, 838
BstUI	CGCG	1 cut(s)	705
BstV1I	GCAGC	6 cut(s)	115, 289, 541, 609, 766, 783
BstV2I	GAAGAC	2 cut(s)	114, 272
BsuRI	GGCC	4 cut(s)	79, 157, 186, 200
BtgI	CCRYGG	2 cut(s)	151, 181
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	247, 328, 727, 830
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	487, 725
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	640
CciI	TCATGA	1 cut(s)	627
Cfr13I	GGNCC	5 cut(s)	155, 156, 185, 199, 382
CseI	GACGC	3 cut(s)	128, 694, 711
Csp6I	GTAC	2 cut(s)	41, 698
CviAII	CATG	4 cut(s)	88, 160, 487, 628
CviQI	GTAC	2 cut(s)	41, 698
DdeI	CTNAG	4 cut(s)	288, 525, 784, 830
DpnI	GATC	3 cut(s)	62, 164, 170
DpnII	GATC	3 cut(s)	60, 162, 168
DraIII	CACNNNGTG	1 cut(s)	718
Eam1104I	CTCTTC	2 cut(s)	390, 405
EarI	CTCTTC	2 cut(s)	390, 405
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	363, 585
Eco24I	GRGCYC	2 cut(s)	159, 213
Eco31I	GGTCTC	1 cut(s)	797
Eco47I	GGWCC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	534, 758
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	79, 195
EcoT14I	CCWWGG	2 cut(s)	363, 585
EcoT38I	GRGCYC	2 cut(s)	159, 213
ErhI	CCWWGG	2 cut(s)	363, 585
FaeI	CATG	4 cut(s)	91, 163, 490, 631
FaiI	YATR	5 cut(s)	89, 161, 377, 488, 629
FatI	CATG	4 cut(s)	87, 159, 486, 627
FauI	CCCGC	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	6 cut(s)	129, 278, 555, 623, 772, 780
FokI	GGATG	4 cut(s)	254, 335, 734, 837
FriOI	GRGCYC	2 cut(s)	159, 213
Fsp4HI	GCNGC	6 cut(s)	129, 278, 555, 623, 772, 780
GluI	GCNGC	6 cut(s)	129, 278, 555, 623, 772, 780
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	453, 837
HaeIII	GGCC	4 cut(s)	79, 157, 186, 200
HapII	CCGG	1 cut(s)	385
HgaI	GACGC	3 cut(s)	128, 694, 711
Hin1I	GRCGYC	2 cut(s)	120, 174
Hin1II	CATG	4 cut(s)	91, 163, 490, 631
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	2 cut(s)	471, 812
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	2 cut(s)	16, 754
Hpy166II	GTNNAC	2 cut(s)	181, 532
Hpy188I	TCNGA	6 cut(s)	51, 291, 521, 544, 595, 738
Hpy188III	TCNNGA	5 cut(s)	97, 166, 628, 816, 872
Hpy8I	GTNNAC	2 cut(s)	181, 532
Hpy99I	CGWCG	4 cut(s)	59, 176, 179, 705
HpyAV	CCTTC	5 cut(s)	310, 346, 397, 682, 733
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	5 cut(s)	260, 277, 337, 682, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 134, 197, 503, 631
HpyF3I	CTNAG	4 cut(s)	288, 525, 784, 830
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	2 cut(s)	120, 174
Hsp92II	CATG	4 cut(s)	91, 163, 490, 631
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	60, 162, 168
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	6 cut(s)	115, 289, 541, 609, 766, 783
LweI	GCATC	2 cut(s)	712, 815
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	482, 787
MalI	GATC	3 cut(s)	62, 164, 170
MboI	GATC	3 cut(s)	60, 162, 168
MboII	GAAGA	7 cut(s)	119, 259, 277, 407, 412, 422, 846
MhlI	GDGCHC	5 cut(s)	159, 213, 289, 584, 838
MluCI	AATT	3 cut(s)	358, 602, 644
MluI	ACGCGT	1 cut(s)	703
MlyI	GAGTC	2 cut(s)	480, 806
MmeI	TCCRAC	1 cut(s)	421
MseI	TTAA	1 cut(s)	657
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	81, 197
MvaI	CCWGG	2 cut(s)	81, 197
MvnI	CGCG	1 cut(s)	705
MwoI	GCNNNNNNNGC	5 cut(s)	128, 134, 197, 503, 631
NdeII	GATC	3 cut(s)	60, 162, 168
NlaIII	CATG	4 cut(s)	91, 163, 490, 631
NlaIV	GGNNCC	2 cut(s)	157, 583
NmuCI	GTSAC	1 cut(s)	482
NspI	RCATGY	2 cut(s)	91, 490
PaeI	GCATGC	1 cut(s)	91
PagI	TCATGA	1 cut(s)	627
PciI	ACATGT	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	6 cut(s)	130, 279, 556, 624, 773, 781
PleI	GAGTC	2 cut(s)	479, 806
PpsI	GAGTC	2 cut(s)	479, 806
PscI	ACATGT	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	79, 195
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	79, 195
PspN4I	GGNNCC	2 cut(s)	157, 583
PspOMI	GGGCCC	1 cut(s)	155
PspPI	GGNCC	5 cut(s)	155, 156, 185, 199, 382
PstNI	CAGNNNCTG	1 cut(s)	640
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	2 cut(s)	42, 699
RsaNI	GTAC	2 cut(s)	41, 698
SacI	GAGCTC	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	6 cut(s)	129, 278, 555, 623, 772, 780
Sau3AI	GATC	3 cut(s)	60, 162, 168
Sau96I	GGNCC	5 cut(s)	155, 156, 185, 199, 382
SchI	GAGTC	2 cut(s)	480, 806
ScrFI	CCNGG	2 cut(s)	81, 197
SduI	GDGCHC	5 cut(s)	159, 213, 289, 584, 838
SfaNI	GCATC	2 cut(s)	712, 815
SinI	GGWCC	1 cut(s)	382
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	3 cut(s)	358, 602, 644
SsiI	CCGC	2 cut(s)	141, 344
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	79, 195
StyI	CCWWGG	2 cut(s)	363, 585
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	63, 171, 531
TasI	AATT	3 cut(s)	358, 602, 644
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	2 cut(s)	487, 732
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	6 cut(s)	128, 277, 554, 622, 771, 779
Tsp45I	GTSAC	1 cut(s)	482
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	2 cut(s)	487, 732
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	2 cut(s)	91, 490
XmiI	GTMKAC	1 cut(s)	531
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.