Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

76276314 .. 76277988

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAAAAAAGATCAAAACGCTGTGTGGAAAAAGATGGGTATATAAGGCAGATAGATTGGGAGCTCAGACCCGGTGGCATGCTTGTCCAAAAACGAGACACTGGGGATGCCTCTTCTCAGTCTTCTGGGCCTATGATCAAGATCAAGGTTTCTCATGATTCTTATTACCACGATGTCACTGTACATTGTCGATCAACTTTCGGCGATCTGAAGAGAATTCTTGCAAATGAGACTGGATTAGAGCCAAAGGCACAAAGGTTGTTGTATAGAGGAAAAGAGAAAGATGATGTTGAATGTTTGCACATCGCAGGTGTAAAAGATATGTCTAAGATTATGTTATTGGAAGACCCAGCTAGCAAAGAGAAGAAGCTTGAAGAAATGAACAAAAATCAAGGTATACTGAAAGCCTATGAAGAGGTTGCCAAAGTTAGAGCACAAGTTGACAAGCTCTCTCAAAAGATTGTGGATATGGAGACAACACTATGCAATGGTACCAAGGTCGCAGATACGGAGATTGTGGTCTTAACAGAGTTGCTCATGGTGGAGTTGCTCAAATTGGATTCCATTGAGGCAGATGGAGAAGCAAAAGTACAGAGGCGGGTAGAGGTTCGTCGTGTACAAAGTTTCGTTGATACACTCGACAACCTAAAAGCAAGAAACTCTAATCCATTCACCAAGAGTAGCAACTCTGTCTCAGTGACTACAAATTGGGAGAGTTTTGAATTGGGGGTTGGAAGCCTGCATGCCCCAACCCTATTGAAATCTTCTACCAAGATAACTCAAGATTGGGAATTGTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

268

Amino Acids

30.19

Weight (kDa)

7.64

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	46 - 114	4.5e-07	Ubiquitin family
BAG	PF02179	140 - 216	1.3e-14	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	299
Acc65I	GGTACC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	491
AccI	GTMKAC	1 cut(s)	397
AciI	CCGC	1 cut(s)	598
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	4 cut(s)	183, 493, 591, 618
AgsI	TTSAA	4 cut(s)	293, 374, 722, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	714, 746
AluBI	AGCT	4 cut(s)	64, 353, 370, 448
AluI	AGCT	4 cut(s)	64, 353, 370, 448
Alw21I	GWGCWC	2 cut(s)	66, 436
Alw26I	GTCTC	4 cut(s)	90, 224, 467, 697
AoxI	GGCC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	216
Asp718I	GGTACC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	664
AsuNHI	GCTAGC	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	66
BarI	GAAGNNNNNNTAC	2 cut(s)	573, 605
BbsI	GAAGAC	2 cut(s)	114, 351
Bbv12I	GWGCWC	2 cut(s)	66, 436
BccI	CCATC	2 cut(s)	29, 569
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	4 cut(s)	90, 224, 467, 697
BfaI	CTAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	111
BpiI	GAAGAC	2 cut(s)	114, 351
BpuEI	CTTGAG	1 cut(s)	765
BpuMI	CCSGG	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	495
Bse1I	ACTGG	2 cut(s)	106, 238
Bse3DI	GCAATG	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	3 cut(s)	79, 131, 708
BseNI	ACTGG	2 cut(s)	106, 238
BseYI	CCCAGC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	491
BsiHKAI	GWGCWC	2 cut(s)	66, 436
BsiSI	CCGG	1 cut(s)	72
BsmAI	GTCTC	4 cut(s)	90, 224, 467, 697
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	66, 436
Bsp1407I	TGTACA	2 cut(s)	181, 616
Bsp143I	GATC	5 cut(s)	11, 135, 141, 191, 205
BspACI	CCGC	1 cut(s)	598
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	3 cut(s)	78, 130, 707
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	493
BspMI	ACCTGC	1 cut(s)	299
BspOI	GCTAGC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	493
BsrGI	TGTACA	2 cut(s)	181, 616
BsrI	ACTGG	2 cut(s)	106, 238
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	5 cut(s)	11, 135, 141, 191, 205
BssNAI	GTATAC	1 cut(s)	398
BssT1I	CCWWGG	1 cut(s)	495
Bst1107I	GTATAC	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	3 cut(s)	118, 206, 408
BstAUI	TGTACA	2 cut(s)	181, 616
BstC8I	GCNNGC	4 cut(s)	80, 355, 740, 744
BstDEI	CTNAG	4 cut(s)	65, 117, 327, 694
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	5 cut(s)	14, 138, 144, 194, 208
BstMAI	GTCTC	4 cut(s)	90, 224, 467, 697
BstMBI	GATC	5 cut(s)	11, 135, 141, 191, 205
BstNSI	RCATGY	2 cut(s)	82, 746
BstSCI	CCNGG	1 cut(s)	70
BstV2I	GAAGAC	2 cut(s)	114, 351
BstZ17I	GTATAC	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	130
BtgZI	GCGATG	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	3 cut(s)	99, 177, 702
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	4 cut(s)	80, 355, 740, 744
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	4 cut(s)	182, 492, 590, 617
CviAII	CATG	4 cut(s)	79, 155, 538, 743
CviJI	RGCY	8 cut(s)	64, 130, 244, 353, 370, 407, 448, 738
CviKI_1	RGCY	8 cut(s)	64, 130, 244, 353, 370, 407, 448, 738
CviQI	GTAC	4 cut(s)	182, 492, 590, 617
DdeI	CTNAG	4 cut(s)	65, 117, 327, 694
DpnI	GATC	5 cut(s)	13, 137, 143, 193, 207
DpnII	GATC	5 cut(s)	11, 135, 141, 191, 205
Eam1104I	CTCTTC	3 cut(s)	118, 206, 408
EarI	CTCTTC	3 cut(s)	118, 206, 408
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	4 cut(s)	82, 158, 541, 746
FatI	CATG	4 cut(s)	78, 154, 537, 742
FauI	CCCGC	1 cut(s)	591
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	397
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	354
GsaI	CCCAGC	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	4 cut(s)	82, 158, 541, 746
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	158, 560
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	3 cut(s)	398, 442, 617
Hpy188I	TCNGA	2 cut(s)	68, 210
Hpy188III	TCNNGA	3 cut(s)	139, 155, 782
Hpy8I	GTNNAC	3 cut(s)	398, 442, 617
Hpy99I	CGWCG	1 cut(s)	615
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	224, 301, 486, 742
HpyF3I	CTNAG	4 cut(s)	65, 117, 327, 694
Hsp92II	CATG	4 cut(s)	82, 158, 541, 746
KpnI	GGTACC	1 cut(s)	495
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	11, 135, 141, 191, 205
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	7 cut(s)	85, 87, 111, 219, 294, 363, 752
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	175, 697
MalI	GATC	5 cut(s)	13, 137, 143, 193, 207
MboI	GATC	5 cut(s)	11, 135, 141, 191, 205
MboII	GAAGA	8 cut(s)	105, 114, 223, 356, 376, 386, 425, 756
MhlI	GDGCHC	2 cut(s)	66, 436
MluCI	AATT	5 cut(s)	216, 554, 706, 722, 791
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	6 cut(s)	121, 263, 409, 562, 588, 598
MseI	TTAA	1 cut(s)	524
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	72
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	5 cut(s)	11, 135, 141, 191, 205
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	4 cut(s)	82, 158, 541, 746
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	175, 697
NspI	RCATGY	2 cut(s)	82, 746
PaeI	GCATGC	2 cut(s)	82, 746
PagI	TCATGA	1 cut(s)	154
PaqCI	CACCTGC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	158, 560
Psp124BI	GAGCTC	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	493
PspPI	GGNCC	1 cut(s)	128
RsaI	GTAC	4 cut(s)	183, 493, 591, 618
RsaNI	GTAC	4 cut(s)	182, 492, 590, 617
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	524
Sau3AI	GATC	5 cut(s)	11, 135, 141, 191, 205
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	2 cut(s)	66, 436
SfaNI	GCATC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	780
SmoI	CTYRAG	1 cut(s)	780
SphI	GCATGC	2 cut(s)	82, 746
Sse9I	AATT	5 cut(s)	216, 554, 706, 722, 791
SsiI	CCGC	1 cut(s)	598
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	190, 639
TasI	AATT	5 cut(s)	216, 554, 706, 722, 791
TatI	WGTACW	3 cut(s)	181, 589, 616
TfiI	GAWTC	2 cut(s)	158, 560
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	3 cut(s)	106, 184, 702
TseFI	GTSAC	2 cut(s)	175, 697
Tsp45I	GTSAC	2 cut(s)	175, 697
TspDTI	ATGAA	3 cut(s)	17, 395, 426
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	3 cut(s)	106, 184, 702
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	2 cut(s)	82, 746
XmiI	GTMKAC	1 cut(s)	397
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.