Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Forward (+)

39879429 .. 39881685

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATCCGACTCCGAACGCTTCTCCGGTCAACGCTCAGAACGAGGACTTCGACCCGGAGGTCCGACCCGGCGGGATGTGCGTCCAGCGCCGCGACTATGAGGACGACTCCGCCGCCGCTCGTGGGCCCAACATCACGATCCGCGTTCATCACGGCCCGGGCCACCACGTCATCAACCTCCCGGCCCACTCCACTTTCGGGGAATTGAAGGAACTTGTTTCAGAGAAGACCGGGGTGAAGCCGGAGGAGCAGAAGCTGTTGTTCAGGGGGAAAGAGAAGGAGGATGAGGAGCATTTAGACGCGGCCGGTGTGAAGGATAATTCCAGGGTTATGCTCTTGCAGGAACCGAAAAGGAAAGAGAGGAGCGTCGGGGAGTTGAATGAGAGCAATGAGATGTTGAGTGATGCAGCAGAGGCAAAGGCATTTGAAGCAATTGCTGGAGTCAGAGCCGAGGTTGACAGCCTCGCAGAGCGGGTTTCTGCTTTGGATGTGGTTGTCAATGGTGGAACCAAGGTTTCCGATAAGGAATTTGCTGTATCAACAGAGTTGCTCATGAGGCAGTTGCTGAAACTGGACGGCATCAAAGCGGAAGGAGAAGCTAGGATGCAGCGGAAGGCTGAGGTACGTCGTGTCCAGAACCTTGTGGATACACTGGACACTCTAAAGGCGAAGAACTCCAATCCGATGAACAACAATAGCAATGGTGTGACTTCTCAAAATAGCAATGGTGTGACTCCTCAGAACAGCAACGGTGTCACTTCACAAAATGGCAATGCTGTCTCCGTAACAACAAAATGGGAGACCTTTGACTCCGGCATGGGTAGCCTGAGTGCCCCAACCCCAATGCCATCTTCCACAGAAGTAACTGAGGACTGGGAGAAGTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

297

Amino Acids

32.26

Weight (kDa)

5.01

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	45 - 116	6.5e-12	Ubiquitin family
BAG	PF02179	145 - 220	4.4e-19	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccBSI	CCGCTC	2 cut(s)	119, 472
AccII	CGCG	3 cut(s)	93, 144, 302
AclWI	GGATC	2 cut(s)	12, 133
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	527
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	2 cut(s)	123, 198
AgsI	TTSAA	3 cut(s)	208, 379, 428
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	835, 867
AluBI	AGCT	2 cut(s)	256, 599
AluI	AGCT	2 cut(s)	256, 599
Alw26I	GTCTC	2 cut(s)	784, 794
AlwI	GGATC	2 cut(s)	12, 133
AlwNI	CAGNNNCTG	2 cut(s)	256, 565
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	5 cut(s)	125, 154, 160, 183, 303
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	407, 607
ApoI	RAATTY	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	6 cut(s)	61, 125, 126, 155, 160, 184
AsuC2I	CCSGG	6 cut(s)	56, 69, 158, 159, 182, 232
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	2 cut(s)	129, 835
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	233
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	419, 619
BccI	CCATC	1 cut(s)	856
BceAI	ACGGC	2 cut(s)	169, 592
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	640
BcnI	CCSGG	6 cut(s)	56, 69, 158, 159, 182, 232
BcoDI	GTCTC	2 cut(s)	784, 794
BfaI	CTAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	640
BisI	GCNGC	6 cut(s)	91, 114, 117, 303, 408, 608
BlsI	GCNGC	6 cut(s)	92, 115, 118, 304, 409, 609
Bme1390I	CCNGG	7 cut(s)	56, 69, 158, 159, 182, 232, 325
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	6 cut(s)	61, 125, 126, 155, 160, 184
BmiI	GGNNCC	4 cut(s)	6, 127, 345, 508
BmrFI	CCNGG	7 cut(s)	56, 69, 158, 159, 182, 232, 325
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	3 cut(s)	394, 588, 594
BmuI	ACTGGG	1 cut(s)	883
BpiI	GAAGAC	1 cut(s)	233
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	618
BpuMI	CCSGG	6 cut(s)	56, 69, 158, 159, 182, 232
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	5 cut(s)	157, 231, 324, 450, 510
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 198
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	3 cut(s)	576, 657, 878
Bse3DI	GCAATG	4 cut(s)	394, 706, 730, 778
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	5 cut(s)	157, 231, 324, 450, 510
BseGI	GGATG	4 cut(s)	81, 289, 493, 609
BseLI	CCNNNNNNNGG	2 cut(s)	123, 198
BseMI	GCAATG	4 cut(s)	394, 706, 730, 778
BseMII	CTCAG	5 cut(s)	50, 609, 752, 818, 858
BseNI	ACTGG	3 cut(s)	576, 657, 878
BseRI	GAGGAG	4 cut(s)	260, 302, 376, 726
BseSI	GKGCMC	2 cut(s)	129, 835
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	419, 619
Bsh1236I	CGCG	3 cut(s)	93, 144, 302
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	5 cut(s)	127, 156, 162, 185, 305
BsiEI	CGRYCG	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 813
BslI	CCNNNNNNNGG	2 cut(s)	123, 198
BsmAI	GTCTC	2 cut(s)	784, 794
BsnI	GGCC	5 cut(s)	127, 156, 162, 185, 305
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	157
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	129, 835
Bsp143I	GATC	2 cut(s)	4, 138
BspANI	GGCC	5 cut(s)	127, 156, 162, 185, 305
BspCNI	CTCAG	5 cut(s)	49, 610, 751, 819, 859
BspFNI	CGCG	3 cut(s)	93, 144, 302
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	4 cut(s)	6, 127, 345, 508
BspPI	GGATC	2 cut(s)	12, 133
BspTNI	GGTCTC	1 cut(s)	794
BsrBI	CCGCTC	2 cut(s)	119, 472
BsrDI	GCAATG	4 cut(s)	394, 706, 730, 778
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	576, 657, 878
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	5 cut(s)	157, 231, 324, 450, 510
BssMI	GATC	2 cut(s)	4, 138
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	752
BstDEI	CTNAG	5 cut(s)	36, 618, 738, 827, 867
BstF5I	GGATG	4 cut(s)	81, 289, 493, 609
BstFNI	CGCG	3 cut(s)	93, 144, 302
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	7, 141
BstMAI	GTCTC	2 cut(s)	784, 794
BstMBI	GATC	2 cut(s)	4, 138
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 413, 428, 556, 822
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	7 cut(s)	54, 67, 156, 157, 180, 230, 323
BstSLI	GKGCMC	2 cut(s)	129, 835
BstUI	CGCG	3 cut(s)	93, 144, 302
BstV1I	GCAGC	2 cut(s)	419, 619
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	5 cut(s)	127, 156, 162, 185, 305
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	4 cut(s)	81, 289, 493, 609
BtsIMutI	CAGTG	1 cut(s)	650
CaiI	CAGNNNCTG	2 cut(s)	256, 565
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	6 cut(s)	61, 125, 126, 155, 160, 184
Cfr9I	CCCGGG	1 cut(s)	157
CseI	GACGC	3 cut(s)	70, 308, 355
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	2 cut(s)	553, 817
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	5 cut(s)	36, 618, 738, 827, 867
DpnI	GATC	2 cut(s)	6, 140
DpnII	GATC	2 cut(s)	4, 138
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	303
EagI	CGGCCG	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	2 cut(s)	556, 820
FaiI	YATR	4 cut(s)	99, 332, 554, 818
FatI	CATG	2 cut(s)	552, 816
FauI	CCCGC	2 cut(s)	65, 465
Fnu4HI	GCNGC	6 cut(s)	91, 114, 117, 303, 408, 608
FokI	GGATG	4 cut(s)	88, 296, 500, 616
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	6 cut(s)	91, 114, 117, 303, 408, 608
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	6 cut(s)	91, 114, 117, 303, 408, 608
GsuI	CTGGAG	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	5 cut(s)	127, 156, 162, 185, 305
HapII	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 813
HgaI	GACGC	3 cut(s)	70, 308, 355
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	556, 820
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	2 cut(s)	31, 457
HindII	GTYRAC	2 cut(s)	31, 457
HinfI	GANTC	5 cut(s)	10, 107, 441, 733, 809
HpaII	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 813
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	31, 457
Hpy188I	TCNGA	9 cut(s)	9, 15, 39, 65, 223, 446, 520, 684, 741
Hpy188III	TCNNGA	3 cut(s)	136, 553, 634
Hpy8I	GTNNAC	2 cut(s)	31, 457
Hpy99I	CGWCG	2 cut(s)	371, 630
HpyAV	CCTTC	5 cut(s)	202, 271, 307, 584, 607
HpyCH4III	ACNGT	1 cut(s)	752
HpyCH4IV	ACGT	2 cut(s)	168, 625
HpyCH4V	TGCA	3 cut(s)	340, 407, 607
HpyF10VI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 413, 428, 556, 822
HpyF3I	CTNAG	5 cut(s)	36, 618, 738, 827, 867
HpySE526I	ACGT	2 cut(s)	168, 625
Hsp92II	CATG	2 cut(s)	556, 820
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	4, 138
LmnI	GCTCC	3 cut(s)	247, 289, 363
Lsp1109I	GCAGC	2 cut(s)	419, 619
LweI	GCATC	3 cut(s)	394, 588, 594
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	168, 625
MaeIII	GTNAC	5 cut(s)	706, 730, 754, 784, 862
MalI	GATC	2 cut(s)	6, 140
MbiI	CCGCTC	2 cut(s)	119, 472
MboI	GATC	2 cut(s)	4, 138
MboII	GAAGA	3 cut(s)	238, 682, 843
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	129, 835
MluCI	AATT	4 cut(s)	203, 319, 432, 527
MlyI	GAGTC	5 cut(s)	4, 101, 450, 727, 803
MmeI	TCCRAC	2 cut(s)	32, 88
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 813
MspR9I	CCNGG	7 cut(s)	56, 69, 158, 159, 182, 232, 325
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	3 cut(s)	93, 144, 302
MwoI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 413, 428, 556, 822
NciI	CCSGG	6 cut(s)	56, 69, 158, 159, 182, 232
NdeII	GATC	2 cut(s)	4, 138
NlaIII	CATG	2 cut(s)	556, 820
NlaIV	GGNNCC	4 cut(s)	6, 127, 345, 508
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	3 cut(s)	706, 730, 754
PagI	TCATGA	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 48
PkrI	GCNGC	6 cut(s)	92, 115, 118, 304, 409, 609
PleI	GAGTC	5 cut(s)	4, 101, 449, 727, 803
PpsI	GAGTC	5 cut(s)	4, 101, 449, 727, 803
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	6, 127, 345, 508
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	6 cut(s)	61, 125, 126, 155, 160, 184
PstNI	CAGNNNCTG	2 cut(s)	256, 565
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SatI	GCNGC	6 cut(s)	91, 114, 117, 303, 408, 608
Sau3AI	GATC	2 cut(s)	4, 138
Sau96I	GGNCC	6 cut(s)	61, 125, 126, 155, 160, 184
SchI	GAGTC	5 cut(s)	4, 101, 450, 727, 803
ScrFI	CCNGG	7 cut(s)	56, 69, 158, 159, 182, 232, 325
SduI	GDGCHC	2 cut(s)	129, 835
SfaNI	GCATC	3 cut(s)	394, 588, 594
SinI	GGWCC	1 cut(s)	61
SmaI	CCCGGG	1 cut(s)	159
SrfI	GCCCGGGC	1 cut(s)	159
Sse9I	AATT	4 cut(s)	203, 319, 432, 527
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	7 cut(s)	54, 67, 156, 157, 180, 230, 323
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	752
TaiI	ACGT	2 cut(s)	171, 628
TaqI	TCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	203, 319, 432, 527
TauI	GCSGC	4 cut(s)	93, 116, 119, 305
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	3 cut(s)	706, 730, 754
TseI	GCWGC	2 cut(s)	407, 607
Tsp45I	GTSAC	3 cut(s)	706, 730, 754
TspDTI	ATGAA	2 cut(s)	137, 701
TspGWI	ACGGA	1 cut(s)	772
TspMI	CCCGGG	1 cut(s)	157
TspRI	CASTG	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	527
XmaI	CCCGGG	1 cut(s)	157
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.