Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

4332357 .. 4333415

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCAAGGTGATCGATCTCTGCCGCTGAAAAGAGTTCTTTCCCATGAGACTGGATTGGAGCCAAAGGAACAAAAATTGTTGTTCAGAGGGAAAGAGAAGGAAGATAATGAATGTCTGCACATAGCAGGCGTAGAAGATACGTCGAAGATTGTATTACTAGAGGACCCGGCTAGCAAAGAGAAGAAGCTTGAAGAGATGAAGAAAAATCAAGGCACATTGAAAGCCTATGAGGAAGTTGCCAAAGTTAGAGCAGAGGTTGACAAGCTCTCTCAAAAGATTGTTGATTTGGAGACAAGTCTGTTAAGTGGCATCAAGGTTTCAGATAGGGAAATTGTTGTCTTAACAGAGTTACTCATGGTGGAGTTACTTAAATTGGATTCGATTGTAGCTGATGGAGAAGCAAAAGTGCAGAGGCGGGTCGAGGTTCGACGTGTGCAGAGCTTTGTTGACACGCTCGACAATCTGAAGGCGAGAAACTCTAATCCATTCAGCAAGAAGAGTATCAACGCGGTCTCGGCCACTACAAATTGGGAGAGGTTTGAGTTGGGGGTTGGAAGCCTGCATGCCCCGACCCCATTGCCATTTTCTACCAAAATAACTCAGGATTGGGAATTGTTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

208

Amino Acids

23.37

Weight (kDa)

5.8

Isoelectric Point (pI)

27.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	509
AciI	CCGC	3 cut(s)	23, 415, 509
AcoI	YGGCCR	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	191, 220
AjiI	CACGTC	1 cut(s)	431
AluBI	AGCT	4 cut(s)	187, 265, 389, 441
AluI	AGCT	4 cut(s)	187, 265, 389, 441
Alw26I	GTCTC	3 cut(s)	41, 284, 517
AoxI	GGCC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	20
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	163
BccI	CCATC	1 cut(s)	386
BcgI	CGANNNNNNTGC	3 cut(s)	27, 559, 593
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	41, 284, 517
BfaI	CTAG	2 cut(s)	158, 171
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	60, 165
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	318
BmtI	GCTAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	575
BseCI	ATCGAT	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	1 cut(s)	55
BsgI	GTGCAG	3 cut(s)	101, 428, 455
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	1 cut(s)	518
BshVI	ATCGAT	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	167
BsmAI	GTCTC	3 cut(s)	41, 284, 517
BsnI	GGCC	1 cut(s)	518
Bso31I	GGTCTC	1 cut(s)	517
Bsp143I	GATC	2 cut(s)	10, 14
BspACI	CCGC	3 cut(s)	23, 415, 509
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	1 cut(s)	613
BspDI	ATCGAT	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	509
BspLI	GGNNCC	2 cut(s)	60, 165
BspOI	GCTAGC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	10, 14
Bst6I	CTCTTC	2 cut(s)	186, 491
BstC8I	GCNNGC	4 cut(s)	127, 172, 560, 564
BstDEI	CTNAG	1 cut(s)	600
BstFNI	CGCG	1 cut(s)	509
BstKTI	GATC	2 cut(s)	13, 17
BstMAI	GTCTC	3 cut(s)	41, 284, 517
BstMBI	GATC	2 cut(s)	10, 14
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	509
BstXI	CCANNNNNNTGG	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	518
BsuTUI	ATCGAT	1 cut(s)	13
BtrI	CACGTC	1 cut(s)	431
Cac8I	GCNNGC	4 cut(s)	127, 172, 560, 564
Cfr13I	GGNCC	1 cut(s)	163
ClaI	ATCGAT	1 cut(s)	13
CviAII	CATG	3 cut(s)	44, 355, 563
CviJI	RGCY	9 cut(s)	61, 170, 187, 224, 265, 389, 441, 518, 558
CviKI_1	RGCY	9 cut(s)	61, 170, 187, 224, 265, 389, 441, 518, 558
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	2 cut(s)	12, 16
DpnII	GATC	2 cut(s)	10, 14
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	2 cut(s)	186, 491
EarI	CTCTTC	2 cut(s)	186, 491
Eco31I	GGTCTC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	163
FaeI	CATG	3 cut(s)	47, 358, 566
FaiI	YATR	5 cut(s)	45, 122, 228, 356, 564
FatI	CATG	3 cut(s)	43, 354, 562
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	2 cut(s)	158, 171
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	3 cut(s)	47, 358, 566
HincII	GTYRAC	2 cut(s)	259, 448
HindII	GTYRAC	2 cut(s)	259, 448
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	259, 448
Hpy188I	TCNGA	3 cut(s)	86, 322, 465
Hpy188III	TCNNGA	1 cut(s)	602
Hpy8I	GTNNAC	2 cut(s)	259, 448
Hpy99I	CGWCG	2 cut(s)	145, 432
HpyAV	CCTTC	2 cut(s)	91, 460
HpyCH4IV	ACGT	2 cut(s)	140, 430
HpyCH4V	TGCA	5 cut(s)	4, 118, 409, 436, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	2 cut(s)	140, 430
Hsp92II	CATG	3 cut(s)	47, 358, 566
Kzo9I	GATC	2 cut(s)	10, 14
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	5 cut(s)	36, 111, 180, 572, 587
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	158, 171
MaeII	ACGT	2 cut(s)	140, 430
MaeIII	GTNAC	2 cut(s)	348, 363
MalI	GATC	2 cut(s)	12, 16
MboI	GATC	2 cut(s)	10, 14
MboII	GAAGA	7 cut(s)	113, 146, 157, 193, 203, 211, 508
MluCI	AATT	5 cut(s)	74, 330, 371, 526, 611
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	7 cut(s)	80, 154, 223, 247, 405, 415, 528
MseI	TTAA	3 cut(s)	302, 341, 369
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	10, 14
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	47, 358, 566
NlaIV	GGNNCC	2 cut(s)	60, 165
NmeAIII	GCCGAG	1 cut(s)	494
NspI	RCATGY	1 cut(s)	566
PaeI	GCATGC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	60, 165
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
SaqAI	TTAA	3 cut(s)	302, 341, 369
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	2 cut(s)	10, 14
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	163
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	5 cut(s)	74, 330, 371, 526, 611
SsiI	CCGC	3 cut(s)	23, 415, 509
SspMI	CTAG	2 cut(s)	158, 171
StyD4I	CCNGG	1 cut(s)	165
TaiI	ACGT	2 cut(s)	143, 433
TaqI	TCGA	7 cut(s)	13, 143, 380, 420, 427, 456, 618
TasI	AATT	5 cut(s)	74, 330, 371, 526, 611
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	3 cut(s)	302, 341, 369
Tru9I	TTAA	3 cut(s)	302, 341, 369
TspDTI	ATGAA	2 cut(s)	123, 212
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	566
XspI	CTAG	2 cut(s)	158, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.