Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Forward (+)

17406268 .. 17408903

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14510.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGAAAAAGAATCCGAATCCGAAAGCGCTGGTCCAGAGGCGGGAAGACGAGGATGACGCCTCGGCGGCTGCTGGTGGCGGTGCTTCCGCCTCATTTTGGGGGCCCATGATGAAGATCGACGTAGTTCTCGGCCCGGGCAACGGGCCCCACTTCGAGCTCTTCCTCCCTGCTCACTCCACTTTCGGTGATATGAAGAAACATCTTGCACAGAAGACTGATTTGGAGCCAGAGGAGCAGAGGCTCTTTTTCAGGGGGGTGGAGAAGGCAGATGAGGAGCATCTGGACATTGCTGGTGTGAAGAATAACTCGAAGGTGCTGCTTCTGGAGGCCCGGAAGGAGAGTAAGGTTGAGGAGGTAAATCAAAGCAATGAGATGCCAATCAATGCTGGAGAAGTTGGAGTAAACAGCAAAGAGATGCCAAACAATGGTGGACAGGTTGGAGGCAAAAGCAATGTGATGTCAAAAGCTTCTCATGCAATTGCTGAAGTCGTAGCCGAGGTTGATAAGCTCGCAGAGAGGGTTGCTGTCTTGAAAGTGGCTGTGGCTGGTGGGACCAAGGTTTCCGATAAAGAATTTGTTGTGTCAACAGAGTTGCTCATGAGGCAGTTGCTGAAATTGGACAGCATTCAAGCTGAAGGAGAAGAAAAAATGCAACGCAGGGCAGAGGTGCGACGTGTCCAGAACTTTGTGGATGCATTGGATGCTCTAAAGGCGAGGAACAGCAATCCAGTTAACAACAGTAGCAATGCTACCACAGTAACAACCAAGTGGGAGACCTTTGACTCCGGAGTTGGATGCCTAGATCCCCCAACGTCAACGCCAGAGCCATCGTCAACAGAGCCAAATCAGGAATGGGAACACTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

291

Amino Acids

31.57

Weight (kDa)

5.19

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccIII	TCCGGA	1 cut(s)	788
AciI	CCGC	4 cut(s)	43, 68, 81, 90
AclWI	GGATC	1 cut(s)	800
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	2 cut(s)	507, 657
AcyI	GRCGYC	1 cut(s)	60
AfeI	AGCGCT	1 cut(s)	30
AfiI	CCNNNNNNNGG	4 cut(s)	43, 99, 143, 428
AflIII	ACRYGT	1 cut(s)	676
AgsI	TTSAA	2 cut(s)	535, 632
AjiI	CACGTC	1 cut(s)	677
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	4 cut(s)	160, 470, 511, 635
AluI	AGCT	4 cut(s)	160, 470, 511, 635
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	1 cut(s)	800
AlwNI	CAGNNNCTG	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	136
Aor13HI	TCCGGA	1 cut(s)	788
Aor51HI	AGCGCT	1 cut(s)	30
AoxI	GGCC	4 cut(s)	104, 133, 146, 330
ApaI	GGGCCC	2 cut(s)	108, 150
ApeKI	GCWGC	2 cut(s)	71, 319
ApoI	RAATTY	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	8 cut(s)	34, 104, 105, 134, 146, 147, 331, 555
AsuC2I	CCSGG	3 cut(s)	137, 138, 334
AsuHPI	GGTGA	2 cut(s)	16, 200
AvaI	CYCGRG	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	34, 555
BaeGI	GKGCMC	2 cut(s)	108, 150
BanII	GRGCYC	3 cut(s)	108, 150, 162
BbsI	GAAGAC	2 cut(s)	54, 221
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	58, 306
BccI	CCATC	1 cut(s)	838
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BcnI	CCSGG	3 cut(s)	137, 138, 334
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	1 cut(s)	803
BfoI	RGCGCY	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	69, 72, 320
BlsI	GCNGC	3 cut(s)	70, 73, 321
Bme1390I	CCNGG	3 cut(s)	137, 138, 334
Bme18I	GGWCC	2 cut(s)	34, 555
BmeT110I	CYCGRG	1 cut(s)	136
BmgBI	CACGTC	1 cut(s)	677
BmgT120I	GGNCC	8 cut(s)	34, 104, 105, 134, 146, 147, 331, 555
BmiI	GGNNCC	6 cut(s)	105, 106, 148, 149, 228, 556
BmrFI	CCNGG	3 cut(s)	137, 138, 334
BmsI	GCATC	6 cut(s)	289, 366, 408, 685, 694, 788
BpiI	GAAGAC	2 cut(s)	54, 221
BpmI	CTGGAG	2 cut(s)	347, 411
BpuMI	CCSGG	3 cut(s)	137, 138, 334
BsaBI	GATNNNNATC	2 cut(s)	116, 380
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	4 cut(s)	63, 136, 498, 558
BsaWI	WCCGGW	1 cut(s)	788
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 99, 143, 428
Bse1I	ACTGG	1 cut(s)	731
Bse3DI	GCAATG	4 cut(s)	288, 376, 460, 754
Bse8I	GATNNNNATC	2 cut(s)	116, 380
BseAI	TCCGGA	1 cut(s)	788
BseDI	CCNNGG	4 cut(s)	63, 136, 498, 558
BseGI	GGATG	4 cut(s)	61, 700, 709, 803
BseJI	GATNNNNATC	2 cut(s)	116, 380
BseLI	CCNNNNNNNGG	4 cut(s)	43, 99, 143, 428
BseMI	GCAATG	4 cut(s)	288, 376, 460, 754
BseNI	ACTGG	1 cut(s)	731
BseRI	GAGGAG	3 cut(s)	248, 290, 368
BseSI	GKGCMC	2 cut(s)	108, 150
BseXI	GCAGC	2 cut(s)	58, 306
BshFI	GGCC	4 cut(s)	106, 135, 148, 332
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	3 cut(s)	137, 334, 789
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	4 cut(s)	43, 99, 143, 428
BsmAI	GTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	627
BsnI	GGCC	4 cut(s)	106, 135, 148, 332
Bso31I	GGTCTC	1 cut(s)	770
BsoBI	CYCGRG	1 cut(s)	136
Bsp120I	GGGCCC	2 cut(s)	104, 146
Bsp1286I	GDGCHC	3 cut(s)	108, 150, 162
Bsp13I	TCCGGA	1 cut(s)	788
Bsp143I	GATC	2 cut(s)	117, 805
BspACI	CCGC	4 cut(s)	43, 68, 81, 90
BspANI	GGCC	4 cut(s)	106, 135, 148, 332
BspEI	TCCGGA	1 cut(s)	788
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	6 cut(s)	105, 106, 148, 149, 228, 556
BspPI	GGATC	1 cut(s)	800
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	770
BsrDI	GCAATG	4 cut(s)	288, 376, 460, 754
BsrI	ACTGG	1 cut(s)	731
BssECI	CCNNGG	4 cut(s)	63, 136, 498, 558
BssMI	GATC	2 cut(s)	117, 805
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	743, 760
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	513
BstF5I	GGATG	4 cut(s)	61, 700, 709, 803
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	120, 808
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	2 cut(s)	117, 805
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 235, 476, 604, 704, 713
BstSCI	CCNGG	3 cut(s)	135, 136, 332
BstSLI	GKGCMC	2 cut(s)	108, 150
BstV1I	GCAGC	2 cut(s)	58, 306
BstV2I	GAAGAC	2 cut(s)	54, 221
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	4 cut(s)	106, 135, 148, 332
BtrI	CACGTC	1 cut(s)	677
BtsCI	GGATG	4 cut(s)	61, 700, 709, 803
Cac8I	GCNNGC	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	613
CciI	TCATGA	1 cut(s)	600
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	8 cut(s)	34, 104, 105, 134, 146, 147, 331, 555
Cfr9I	CCCGGG	1 cut(s)	136
CseI	GACGC	1 cut(s)	68
CviAII	CATG	3 cut(s)	109, 476, 601
DpnI	GATC	2 cut(s)	119, 807
DpnII	GATC	2 cut(s)	117, 805
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	3 cut(s)	108, 150, 162
Eco31I	GGTCTC	1 cut(s)	770
Eco47I	GGWCC	2 cut(s)	34, 555
Eco47III	AGCGCT	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	507, 657
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	2 cut(s)	104, 147
EcoT14I	CCWWGG	1 cut(s)	558
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	3 cut(s)	108, 150, 162
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	3 cut(s)	112, 479, 604
FaiI	YATR	4 cut(s)	110, 194, 477, 602
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	3 cut(s)	108, 475, 600
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	69, 72, 320
FokI	GGATG	4 cut(s)	68, 707, 716, 810
FriOI	GRGCYC	3 cut(s)	108, 150, 162
Fsp4HI	GCNGC	3 cut(s)	69, 72, 320
FspBI	CTAG	1 cut(s)	803
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	3 cut(s)	69, 72, 320
GsuI	CTGGAG	2 cut(s)	347, 411
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	4 cut(s)	106, 135, 148, 332
HapII	CCGG	3 cut(s)	137, 334, 789
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	112, 479, 604
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	4 cut(s)	588, 736, 819, 837
HindII	GTYRAC	4 cut(s)	588, 736, 819, 837
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	3 cut(s)	13, 19, 785
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	3 cut(s)	137, 334, 789
HphI	GGTGA	2 cut(s)	16, 200
Hpy166II	GTNNAC	6 cut(s)	406, 434, 588, 736, 819, 837
Hpy188I	TCNGA	3 cut(s)	18, 24, 568
Hpy188III	TCNNGA	8 cut(s)	37, 284, 326, 532, 601, 682, 789, 851
Hpy8I	GTNNAC	6 cut(s)	406, 434, 588, 736, 819, 837
Hpy99I	CGWCG	2 cut(s)	125, 678
HpyAV	CCTTC	4 cut(s)	259, 307, 331, 632
HpyCH4III	ACNGT	2 cut(s)	743, 760
HpyCH4IV	ACGT	3 cut(s)	123, 676, 815
HpyCH4V	TGCA	4 cut(s)	209, 479, 655, 698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 235, 476, 604, 704, 713
HpySE526I	ACGT	3 cut(s)	123, 676, 815
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	112, 479, 604
HspAI	GCGC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	788
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	2 cut(s)	117, 805
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	3 cut(s)	226, 235, 277
Lsp1109I	GCAGC	2 cut(s)	58, 306
LweI	GCATC	6 cut(s)	289, 366, 408, 685, 694, 788
MaeI	CTAG	1 cut(s)	803
MaeII	ACGT	3 cut(s)	123, 676, 815
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	2 cut(s)	119, 807
MboI	GATC	2 cut(s)	117, 805
MboII	GAAGA	7 cut(s)	59, 127, 154, 208, 226, 313, 656
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	3 cut(s)	108, 150, 162
MluCI	AATT	3 cut(s)	480, 575, 617
MlyI	GAGTC	1 cut(s)	779
MmeI	TCCRAC	3 cut(s)	379, 421, 775
Mph1103I	ATGCAT	1 cut(s)	700
MroI	TCCGGA	1 cut(s)	788
MseI	TTAA	1 cut(s)	735
MspI	CCGG	3 cut(s)	137, 334, 789
MspR9I	CCNGG	3 cut(s)	137, 138, 334
MunI	CAATTG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	627
MwoI	GCNNNNNNNGC	6 cut(s)	68, 235, 476, 604, 704, 713
NciI	CCSGG	3 cut(s)	137, 138, 334
NdeII	GATC	2 cut(s)	117, 805
NlaIII	CATG	3 cut(s)	112, 479, 604
NlaIV	GGNNCC	6 cut(s)	105, 106, 148, 149, 228, 556
NmeAIII	GCCGAG	3 cut(s)	44, 111, 523
NsiI	ATGCAT	1 cut(s)	700
PagI	TCATGA	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	167
PctI	GAATGC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	13, 19
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	3 cut(s)	70, 73, 321
PleI	GAGTC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	779
Psp124BI	GAGCTC	1 cut(s)	162
PspN4I	GGNNCC	6 cut(s)	105, 106, 148, 149, 228, 556
PspOMI	GGGCCC	2 cut(s)	104, 146
PspPI	GGNCC	8 cut(s)	34, 104, 105, 134, 146, 147, 331, 555
PstNI	CAGNNNCTG	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	805
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	735
SatI	GCNGC	3 cut(s)	69, 72, 320
Sau3AI	GATC	2 cut(s)	117, 805
Sau96I	GGNCC	8 cut(s)	34, 104, 105, 134, 146, 147, 331, 555
SchI	GAGTC	1 cut(s)	779
ScrFI	CCNGG	3 cut(s)	137, 138, 334
SduI	GDGCHC	3 cut(s)	108, 150, 162
SfaNI	GCATC	6 cut(s)	289, 366, 408, 685, 694, 788
SinI	GGWCC	2 cut(s)	34, 555
SmaI	CCCGGG	1 cut(s)	138
SrfI	GCCCGGGC	1 cut(s)	138
Sse9I	AATT	3 cut(s)	480, 575, 617
SsiI	CCGC	4 cut(s)	43, 68, 81, 90
SspMI	CTAG	1 cut(s)	803
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	135, 136, 332
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	743, 760
TaiI	ACGT	3 cut(s)	126, 679, 818
TaqI	TCGA	4 cut(s)	120, 156, 311, 867
TasI	AATT	3 cut(s)	480, 575, 617
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	13, 19
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TseI	GCWGC	2 cut(s)	71, 319
TspDTI	ATGAA	2 cut(s)	128, 209
TspMI	CCCGGG	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	34, 555
XapI	RAATTY	1 cut(s)	575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	852
XmaI	CCCGGG	1 cut(s)	136
XspI	CTAG	1 cut(s)	803
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.