Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Forward (+)

25328063 .. 25331428

Gene Structure 3366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1162100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTGAAAAGGAATCCGAACCCGAACCCGAACCCGAGTCCGAAAGCGTTGGTACCCGATCAGGACGAGGAGATTGATTGGGAGATGCGCCCAGGTGGCATGCTGGTCCAGAGGCGGGAAGCCGAGGATGACGCCTCGGCGACTGCTGGTGGTGGTGCTTCCGCCTCATTTCGGGGGCCCATGATGAAGATCGACGTAGTTCTCGGCCCGGGCAACGGGCCCCACTTCGAGCTCTTCCTCCCTGCTCACTCCACTTTCGGTGATATGAAGAAACATCTTGCACAGAAGGCTGATTTGGAGCCAGAGGAGCAGAGACTCTTTTTCAGGGGGGTGGAGAAGGCAGATGAGGAGCATCTGGACATTGTTGGTGTGAAGAATAACTCGAAGGTGCTGCTTCTGGAGGCCCGAAAGGAGAGTAAGGTTGAGGAGGTAAATCAAAGCAATGAGATGCCAAACAATGCTGGAGAAGTTGGAGTCAACAGCAAAGAGATGCCAAACAATGGTGGACAGGTTGGAGCCAAAAGCAATGTGATGTCAAAAGCTTCTTGTGCAATTGCTGAAGTCATAGCCGAGGTTGATAAGCTTGCAGAGAGGGTTGCTGCCTTGGAAGTGGCTGTGGCTGGCGGGACCAAGGTTTCCGATAAAGAATTTGTTGTGTCAACAGAGTTGCTCATGAGGCAGTTGCTGAAATTGGACAGCATTCAAGCTGAAGGAGAAGAAAAAATGCAACGCAGGGCAGAGGTGCGACGTGTCCAGAACTTTGTGGATGCATTGGATGCTCTAAAGGCGAGGAACAGCAATCCAGTTAAAAACAGTAGCGATGCTACCGCAGTAACAACCAAGTGGGAGACCTTTGACTCGGGAGTTGGATGCCTAGATCCCCCAACCGCAACGCCAGAGCCATCGTCAACAGAACCAAATCAGGAATGGGAACACTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

315

Amino Acids

34.2

Weight (kDa)

4.91

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	75 - 132	1.9e-06	Ubiquitin family
BAG	PF02179	185 - 261	2.3e-16	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	52
AccB7I	CCANNNNNTGG	1 cut(s)	500
AciI	CCGC	5 cut(s)	115, 162, 624, 828, 888
AclWI	GGATC	1 cut(s)	872
AcsI	RAATTY	1 cut(s)	647
AcuI	CTGAAG	2 cut(s)	579, 729
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	4 cut(s)	115, 171, 215, 500
AflIII	ACRYGT	1 cut(s)	748
AgsI	TTSAA	1 cut(s)	704
AjiI	CACGTC	1 cut(s)	749
AjnI	CCWGG	1 cut(s)	91
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	4 cut(s)	232, 542, 583, 707
AluI	AGCT	4 cut(s)	232, 542, 583, 707
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	307, 842
AlwI	GGATC	1 cut(s)	872
AlwNI	CAGNNNCTG	1 cut(s)	685
Ama87I	CYCGRG	3 cut(s)	34, 208, 859
AoxI	GGCC	4 cut(s)	176, 205, 218, 402
ApaI	GGGCCC	2 cut(s)	180, 222
ApeKI	GCWGC	2 cut(s)	391, 599
ApoI	RAATTY	1 cut(s)	647
Asp718I	GGTACC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	8 cut(s)	106, 176, 177, 206, 218, 219, 403, 627
AsuC2I	CCSGG	2 cut(s)	209, 210
AsuHPI	GGTGA	2 cut(s)	16, 272
AvaI	CYCGRG	3 cut(s)	34, 208, 859
AvaII	GGWCC	2 cut(s)	106, 627
BaeGI	GKGCMC	2 cut(s)	180, 222
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	3 cut(s)	180, 222, 234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	378, 586
BccI	CCATC	1 cut(s)	910
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BciT130I	CCWGG	1 cut(s)	93
BcnI	CCSGG	2 cut(s)	209, 210
BcoDI	GTCTC	2 cut(s)	307, 842
BfaI	CTAG	1 cut(s)	875
BglI	GCCNNNNNGGC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	392, 600
BlsI	GCNGC	2 cut(s)	393, 601
Bme1390I	CCNGG	3 cut(s)	93, 209, 210
Bme18I	GGWCC	2 cut(s)	106, 627
BmeT110I	CYCGRG	3 cut(s)	34, 208, 859
BmgBI	CACGTC	1 cut(s)	749
BmgT120I	GGNCC	8 cut(s)	106, 176, 177, 206, 218, 219, 403, 627
BmiI	GGNNCC	8 cut(s)	54, 177, 178, 220, 221, 300, 517, 628
BmrFI	CCNGG	3 cut(s)	93, 209, 210
BmsI	GCATC	8 cut(s)	75, 361, 438, 480, 757, 766, 811, 860
BpmI	CTGGAG	2 cut(s)	419, 483
BpuMI	CCSGG	2 cut(s)	209, 210
BsaBI	GATNNNNATC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	842
BsaJI	CCNNGG	7 cut(s)	91, 123, 135, 208, 570, 603, 630
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 171, 215, 500
Bse1I	ACTGG	1 cut(s)	803
Bse3DI	GCAATG	2 cut(s)	448, 532
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	7 cut(s)	91, 123, 135, 208, 570, 603, 630
BseGI	GGATG	4 cut(s)	133, 772, 781, 875
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	4 cut(s)	115, 171, 215, 500
BseMI	GCAATG	2 cut(s)	448, 532
BseNI	ACTGG	1 cut(s)	803
BseRI	GAGGAG	4 cut(s)	83, 320, 362, 440
BseSI	GKGCMC	2 cut(s)	180, 222
BseXI	GCAGC	2 cut(s)	378, 586
BshFI	GGCC	4 cut(s)	178, 207, 220, 404
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	3 cut(s)	34, 208, 859
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	4 cut(s)	115, 171, 215, 500
BsmAI	GTCTC	2 cut(s)	307, 842
BsmFI	GGGAC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	4 cut(s)	178, 207, 220, 404
Bso31I	GGTCTC	1 cut(s)	842
BsoBI	CYCGRG	3 cut(s)	34, 208, 859
Bsp120I	GGGCCC	2 cut(s)	176, 218
Bsp1286I	GDGCHC	3 cut(s)	180, 222, 234
Bsp143I	GATC	3 cut(s)	58, 189, 877
BspACI	CCGC	5 cut(s)	115, 162, 624, 828, 888
BspANI	GGCC	4 cut(s)	178, 207, 220, 404
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	8 cut(s)	54, 177, 178, 220, 221, 300, 517, 628
BspPI	GGATC	1 cut(s)	872
BspQI	GCTCTTC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	842
BsrDI	GCAATG	2 cut(s)	448, 532
BsrI	ACTGG	1 cut(s)	803
BssECI	CCNNGG	7 cut(s)	91, 123, 135, 208, 570, 603, 630
BssMI	GATC	3 cut(s)	58, 189, 877
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	2 cut(s)	603, 630
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	815
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	101, 585, 622
BstF5I	GGATG	4 cut(s)	133, 772, 781, 875
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	61, 192, 880
BstMAI	GTCTC	2 cut(s)	307, 842
BstMBI	GATC	3 cut(s)	58, 189, 877
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 287, 307, 548, 676, 776, 785
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	3 cut(s)	91, 207, 208
BstSLI	GKGCMC	2 cut(s)	180, 222
BstV1I	GCAGC	2 cut(s)	378, 586
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
BsuRI	GGCC	4 cut(s)	178, 207, 220, 404
BtgZI	GCGATG	1 cut(s)	834
BtrI	CACGTC	1 cut(s)	749
BtsCI	GGATG	4 cut(s)	133, 772, 781, 875
Cac8I	GCNNGC	3 cut(s)	101, 585, 622
CaiI	CAGNNNCTG	1 cut(s)	685
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	8 cut(s)	106, 176, 177, 206, 218, 219, 403, 627
Cfr9I	CCCGGG	1 cut(s)	208
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	3 cut(s)	100, 181, 673
CviQI	GTAC	1 cut(s)	53
DpnI	GATC	3 cut(s)	60, 191, 879
DpnII	GATC	3 cut(s)	58, 189, 877
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	603, 630
Eco24I	GRGCYC	3 cut(s)	180, 222, 234
Eco31I	GGTCTC	1 cut(s)	842
Eco47I	GGWCC	2 cut(s)	106, 627
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	579, 729
Eco88I	CYCGRG	3 cut(s)	34, 208, 859
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	2 cut(s)	176, 219
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	603, 630
EcoT22I	ATGCAT	1 cut(s)	772
EcoT38I	GRGCYC	3 cut(s)	180, 222, 234
ErhI	CCWWGG	2 cut(s)	603, 630
FaeI	CATG	3 cut(s)	103, 184, 676
FaiI	YATR	5 cut(s)	101, 182, 266, 566, 674
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	3 cut(s)	99, 180, 672
FauI	CCCGC	2 cut(s)	108, 617
Fnu4HI	GCNGC	2 cut(s)	392, 600
FokI	GGATG	4 cut(s)	140, 779, 788, 882
FriOI	GRGCYC	3 cut(s)	180, 222, 234
Fsp4HI	GCNGC	2 cut(s)	392, 600
FspBI	CTAG	1 cut(s)	875
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	392, 600
GsuI	CTGGAG	2 cut(s)	419, 483
HaeIII	GGCC	4 cut(s)	178, 207, 220, 404
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	103, 184, 676
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	3 cut(s)	478, 660, 909
HindII	GTYRAC	3 cut(s)	478, 660, 909
HindIII	AAGCTT	2 cut(s)	540, 581
HinfI	GANTC	5 cut(s)	13, 37, 315, 474, 857
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	16, 272
Hpy166II	GTNNAC	4 cut(s)	478, 506, 660, 909
Hpy188I	TCNGA	3 cut(s)	18, 42, 640
Hpy188III	TCNNGA	8 cut(s)	62, 109, 356, 398, 673, 754, 861, 923
Hpy8I	GTNNAC	4 cut(s)	478, 506, 660, 909
Hpy99I	CGWCG	2 cut(s)	197, 750
HpyAV	CCTTC	4 cut(s)	280, 331, 379, 704
HpyCH4III	ACNGT	1 cut(s)	815
HpyCH4IV	ACGT	2 cut(s)	195, 748
HpyCH4V	TGCA	5 cut(s)	281, 551, 587, 727, 770
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 287, 307, 548, 676, 776, 785
HpySE526I	ACGT	2 cut(s)	195, 748
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	103, 184, 676
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	56
Kzo9I	GATC	3 cut(s)	58, 189, 877
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	4 cut(s)	298, 307, 349, 515
Lsp1109I	GCAGC	2 cut(s)	378, 586
LweI	GCATC	8 cut(s)	75, 361, 438, 480, 757, 766, 811, 860
MaeI	CTAG	1 cut(s)	875
MaeII	ACGT	2 cut(s)	195, 748
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	3 cut(s)	60, 191, 879
MboI	GATC	3 cut(s)	58, 189, 877
MboII	GAAGA	5 cut(s)	199, 226, 280, 385, 728
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	3 cut(s)	180, 222, 234
MluCI	AATT	3 cut(s)	552, 647, 689
MlyI	GAGTC	4 cut(s)	46, 309, 483, 851
MmeI	TCCRAC	3 cut(s)	451, 493, 847
Mph1103I	ATGCAT	1 cut(s)	772
MseI	TTAA	1 cut(s)	807
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	3 cut(s)	93, 209, 210
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	7 cut(s)	96, 287, 307, 548, 676, 776, 785
NciI	CCSGG	2 cut(s)	209, 210
NdeII	GATC	3 cut(s)	58, 189, 877
NlaIII	CATG	3 cut(s)	103, 184, 676
NlaIV	GGNNCC	8 cut(s)	54, 177, 178, 220, 221, 300, 517, 628
NmeAIII	GCCGAG	4 cut(s)	116, 148, 183, 595
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	1 cut(s)	103
PaeI	GCATGC	1 cut(s)	103
PagI	TCATGA	1 cut(s)	672
PciSI	GCTCTTC	1 cut(s)	239
PctI	GAATGC	1 cut(s)	699
PfeI	GAWTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	393, 601
PleI	GAGTC	4 cut(s)	45, 309, 482, 851
PpsI	GAGTC	4 cut(s)	45, 309, 482, 851
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	8 cut(s)	54, 177, 178, 220, 221, 300, 517, 628
PspOMI	GGGCCC	2 cut(s)	176, 218
PspPI	GGNCC	8 cut(s)	106, 176, 177, 206, 218, 219, 403, 627
PstNI	CAGNNNCTG	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	877
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	2 cut(s)	392, 600
Sau3AI	GATC	3 cut(s)	58, 189, 877
Sau96I	GGNCC	8 cut(s)	106, 176, 177, 206, 218, 219, 403, 627
SchI	GAGTC	4 cut(s)	46, 309, 483, 851
ScrFI	CCNGG	3 cut(s)	93, 209, 210
SduI	GDGCHC	3 cut(s)	180, 222, 234
SfaNI	GCATC	8 cut(s)	75, 361, 438, 480, 757, 766, 811, 860
SinI	GGWCC	2 cut(s)	106, 627
SmaI	CCCGGG	1 cut(s)	210
SphI	GCATGC	1 cut(s)	103
SrfI	GCCCGGGC	1 cut(s)	210
Sse9I	AATT	3 cut(s)	552, 647, 689
SsiI	CCGC	5 cut(s)	115, 162, 624, 828, 888
SspMI	CTAG	1 cut(s)	875
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	91, 207, 208
StyI	CCWWGG	2 cut(s)	603, 630
TaaI	ACNGT	1 cut(s)	815
TaiI	ACGT	2 cut(s)	198, 751
TaqI	TCGA	4 cut(s)	192, 228, 383, 939
TasI	AATT	3 cut(s)	552, 647, 689
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TseI	GCWGC	2 cut(s)	391, 599
TspDTI	ATGAA	2 cut(s)	200, 281
TspMI	CCCGGG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	106, 627
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	924
XmaI	CCCGGG	1 cut(s)	208
XspI	CTAG	1 cut(s)	875
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.