Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

70083337 .. 70084969

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG504400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAAAAAAAGATCAAAACGCGGTGTGGAAAAAGATGGGTATATAAGGCAGATAGATTGGGAGCTCAGACCCGGTGGCATGCTTGTCCAAAAACGAGACACTGGGGATGCCTCTTCTGGGCCTATGATCAAGATCAAGGTTTCTCATGATTCTTATTACCACGATGTCACTGTACATTGTCGATCAACTTTTGGCGATCTGAAGAGAATTCTTGCAAATGAGACTGGATTAGAGCCAAAGGCGCAGAGGTTGTTGTATAGAGGAAAAGAGAAGGATGATGTTGAATGTTTGCACATCGCAGGTGTAAAAGATATGTCTAAGATTATGTTATTGGAAGACCCAGCTAGCAAAGAGAAGAAGCTTGAAGAAATGAACAAAAATCAAGGTATACTGAAAGCCTATGAAGAGGTTGCCAAAGTTAGAGCACAAGTTGACAAGCTCTCTCAAAAGATTGTGGATATGGAGACAACACTATGCAATGGTACCAAGGTCGCAGATACGGAGATTGTGGTCTTAACAGAGTTGCTCATGGTGGAGTTGCTCAAATTGGATTCCATTGAGGCAGATGGAGAAGCAAAAGTACAGAGGCGGGTAGAGGTTCGTCGTGTACAAAGTTTCGTTGATACACTCGACAACCTAAAAGCAAGAAACTCTAATCCATTCAGCAAGAGTAGCAACTCTGTCTCAGTGACTACAAATTGGGAGAGTTTTGAATTGGGGGTTGGAAGCCTGCATGCCCCAACCCCATTGAAATCTTTTACCAAGATAACTCAAGATTGGGAACTGTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

264

Amino Acids

29.87

Weight (kDa)

7.68

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	43 - 111	4.4e-07	Ubiquitin family
BAG	PF02179	137 - 213	1.3e-14	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	290
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	388
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	21, 589
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	4 cut(s)	174, 484, 582, 609
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	284, 365, 713, 751
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	4 cut(s)	64, 344, 361, 439
AluI	AGCT	4 cut(s)	64, 344, 361, 439
Alw21I	GWGCWC	2 cut(s)	66, 427
Alw26I	GTCTC	4 cut(s)	90, 215, 458, 688
AoxI	GGCC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	207
Asp718I	GGTACC	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	72
AsuNHI	GCTAGC	1 cut(s)	344
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BanI	GGYRCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	66
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	66, 427
BccI	CCATC	2 cut(s)	29, 560
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	4 cut(s)	90, 215, 458, 688
BfaI	CTAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	756
BpuMI	CCSGG	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	106, 229
Bse3DI	GCAATG	1 cut(s)	484
Bse8I	GATNNNNATC	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	112, 280
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	79, 699
BseNI	ACTGG	2 cut(s)	106, 229
BseYI	CCCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	482
BsiHKAI	GWGCWC	2 cut(s)	66, 427
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	4 cut(s)	90, 215, 458, 688
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	66, 427
Bsp1407I	TGTACA	2 cut(s)	172, 607
Bsp143I	GATC	5 cut(s)	11, 126, 132, 182, 196
BspACI	CCGC	2 cut(s)	21, 589
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	2 cut(s)	78, 698
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	290
BspOI	GCTAGC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	484
BsrGI	TGTACA	2 cut(s)	172, 607
BsrI	ACTGG	2 cut(s)	106, 229
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	5 cut(s)	11, 126, 132, 182, 196
BssNAI	GTATAC	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	486
Bst1107I	GTATAC	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	172, 786
Bst6I	CTCTTC	3 cut(s)	118, 197, 399
BstAUI	TGTACA	2 cut(s)	172, 607
BstC8I	GCNNGC	4 cut(s)	80, 346, 731, 735
BstDEI	CTNAG	3 cut(s)	65, 318, 685
BstF5I	GGATG	2 cut(s)	112, 280
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	5 cut(s)	14, 129, 135, 185, 199
BstMAI	GTCTC	4 cut(s)	90, 215, 458, 688
BstMBI	GATC	5 cut(s)	11, 126, 132, 182, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 672
BstNSI	RCATGY	2 cut(s)	82, 737
BstSCI	CCNGG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	342
BstZ17I	GTATAC	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	121
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	112, 280
BtsIMutI	CAGTG	3 cut(s)	99, 168, 693
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	4 cut(s)	80, 346, 731, 735
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	4 cut(s)	173, 483, 581, 608
CviAII	CATG	4 cut(s)	79, 146, 529, 734
CviJI	RGCY	8 cut(s)	64, 121, 235, 344, 361, 398, 439, 729
CviKI_1	RGCY	8 cut(s)	64, 121, 235, 344, 361, 398, 439, 729
CviQI	GTAC	4 cut(s)	173, 483, 581, 608
DdeI	CTNAG	3 cut(s)	65, 318, 685
DpnI	GATC	5 cut(s)	13, 128, 134, 184, 198
DpnII	GATC	5 cut(s)	11, 126, 132, 182, 196
Eam1104I	CTCTTC	3 cut(s)	118, 197, 399
EarI	CTCTTC	3 cut(s)	118, 197, 399
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	4 cut(s)	82, 149, 532, 737
FatI	CATG	4 cut(s)	78, 145, 528, 733
FauI	CCCGC	1 cut(s)	582
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	388
FokI	GGATG	2 cut(s)	119, 287
FriOI	GRGCYC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	82, 149, 532, 737
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	149, 551
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	3 cut(s)	389, 433, 608
Hpy188I	TCNGA	2 cut(s)	68, 201
Hpy188III	TCNNGA	3 cut(s)	130, 146, 773
Hpy8I	GTNNAC	3 cut(s)	389, 433, 608
Hpy99I	CGWCG	1 cut(s)	606
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	172, 786
HpyCH4V	TGCA	4 cut(s)	215, 292, 477, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 672
HpyF3I	CTNAG	3 cut(s)	65, 318, 685
Hsp92II	CATG	4 cut(s)	82, 149, 532, 737
HspAI	GCGC	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	11, 126, 132, 182, 196
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	7 cut(s)	85, 87, 102, 210, 285, 354, 743
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	166, 688
MalI	GATC	5 cut(s)	13, 128, 134, 184, 198
MboI	GATC	5 cut(s)	11, 126, 132, 182, 196
MboII	GAAGA	6 cut(s)	105, 214, 347, 367, 377, 416
MhlI	GDGCHC	2 cut(s)	66, 427
MluCI	AATT	4 cut(s)	207, 545, 697, 713
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	7 cut(s)	121, 240, 254, 400, 553, 579, 589
MseI	TTAA	1 cut(s)	515
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	241, 672
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	5 cut(s)	11, 126, 132, 182, 196
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	4 cut(s)	82, 149, 532, 737
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	2 cut(s)	166, 688
NspI	RCATGY	2 cut(s)	82, 737
PaeI	GCATGC	2 cut(s)	82, 737
PagI	TCATGA	1 cut(s)	145
PaqCI	CACCTGC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	149, 551
Psp124BI	GAGCTC	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	119
RsaI	GTAC	4 cut(s)	174, 484, 582, 609
RsaNI	GTAC	4 cut(s)	173, 483, 581, 608
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	515
Sau3AI	GATC	5 cut(s)	11, 126, 132, 182, 196
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	2 cut(s)	66, 427
SfaNI	GCATC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	771
SmoI	CTYRAG	1 cut(s)	771
SphI	GCATGC	2 cut(s)	82, 737
Sse9I	AATT	4 cut(s)	207, 545, 697, 713
SsiI	CCGC	2 cut(s)	21, 589
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	172, 786
TaqI	TCGA	2 cut(s)	181, 630
TasI	AATT	4 cut(s)	207, 545, 697, 713
TatI	WGTACW	3 cut(s)	172, 580, 607
TfiI	GAWTC	2 cut(s)	149, 551
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	3 cut(s)	106, 175, 693
TseFI	GTSAC	2 cut(s)	166, 688
Tsp45I	GTSAC	2 cut(s)	166, 688
TspDTI	ATGAA	3 cut(s)	17, 386, 417
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	3 cut(s)	106, 175, 693
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	2 cut(s)	82, 737
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.