Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002134.1

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Forward (+)

18340 .. 22775

Gene Structure 4436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002134.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggaaccgattccgaacgcttcgccggtcaacgctccgaacgaggacttcgacccggagctccgacccggcgggatgtgcgtccagcgccgcgactatgacgacgactccgtcgccgcccgtgggcccaacatcacgatccgcgtctatcacggcccggcccaccacgtcatcaacctcccggcccactccactttcggggaattgaagggacttgtttcagagaagaccggggtgaagccggaggagcagaagctgttgttcagggggaaagagaaggaggatgaggagcatttagacgcggccggtgtgagggataattccagggttatgctcttgcaggaaccgaaaaggaaagagaggagcgtcggggagttgaatgagagcaatgagatgttgagtgatgcagcagaggcaaaggcatttgaagcaattgctgaagtcagagccgaggttgacagcctcgcagaccgggtttctgttttgggtgtggctgtcaatggtggaaccgaggtttccgataaggagtttgctgtatcaacagagttgctcatgaggcagttgctgaaactggatggcatcaaagcggaaggagaagctaggatgcagcggaaggctgaggtacgtcgtgtccagaaccttgtggatacactggacaatctaaaggcgaagaactccaatccgatgaacaacaatagcaatggtgtgacttctcaaaatagcaatggtgcgactcagaacagcaacggccgcctaggcgctgggtggcagctctccgactcgagtaatgtaaaatcggcggggttagtcgctgggcggttcggtgattcggcgctaggcgggtttctgcctctctcagtcagcgggaggaagagatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

293

Amino Acids

31.68

Weight (kDa)

5.56

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccII	CGCG	3 cut(s)	93, 144, 302
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	2 cut(s)	303, 748
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
AgsI	TTSAA	3 cut(s)	208, 379, 428
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	4 cut(s)	61, 256, 599, 772
AluI	AGCT	4 cut(s)	61, 256, 599, 772
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	133
AlwNI	CAGNNNCTG	2 cut(s)	256, 565
Ama87I	CYCGRG	1 cut(s)	781
AoxI	GGCC	6 cut(s)	125, 154, 159, 183, 303, 748
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	3 cut(s)	407, 607, 769
Asp700I	GAANNNNTTC	1 cut(s)	9
AspA2I	CCTAGG	1 cut(s)	754
AspLEI	GCGC	3 cut(s)	90, 761, 835
AspS9I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
AsuC2I	CCSGG	6 cut(s)	56, 69, 158, 182, 232, 473
AsuHPI	GGTGA	2 cut(s)	247, 836
AvaI	CYCGRG	1 cut(s)	781
AvrII	CCTAGG	1 cut(s)	754
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	2 cut(s)	63, 129
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	3 cut(s)	419, 619, 781
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	2 cut(s)	169, 763
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	640
BcnI	CCSGG	6 cut(s)	56, 69, 158, 182, 232, 473
BfaI	CTAG	3 cut(s)	600, 755, 836
BfoI	RGCGCY	3 cut(s)	91, 762, 836
BfuI	GTATCC	1 cut(s)	640
BglI	GCCNNNNNGGC	1 cut(s)	756
BisI	GCNGC	7 cut(s)	91, 117, 303, 408, 608, 751, 770
BlnI	CCTAGG	1 cut(s)	754
BlsI	GCNGC	7 cut(s)	92, 118, 304, 409, 609, 752, 771
Bme1390I	CCNGG	7 cut(s)	56, 69, 158, 182, 232, 325, 473
BmeT110I	CYCGRG	1 cut(s)	781
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
BmiI	GGNNCC	4 cut(s)	6, 127, 345, 508
BmrFI	CCNGG	7 cut(s)	56, 69, 158, 182, 232, 325, 473
BmsI	GCATC	3 cut(s)	394, 588, 594
BpiI	GAAGAC	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	618
BpuMI	CCSGG	6 cut(s)	56, 69, 158, 182, 232, 473
BsaJI	CCNNGG	6 cut(s)	121, 231, 324, 450, 510, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 198, 312
Bse118I	RCCGGY	2 cut(s)	25, 305
Bse1I	ACTGG	2 cut(s)	576, 657
Bse3DI	GCAATG	3 cut(s)	394, 706, 730
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	6 cut(s)	121, 231, 324, 450, 510, 754
BseGI	GGATG	4 cut(s)	81, 289, 580, 609
BseLI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
BseMI	GCAATG	3 cut(s)	394, 706, 730
BseMII	CTCAG	3 cut(s)	609, 749, 870
BseNI	ACTGG	2 cut(s)	576, 657
BseRI	GAGGAG	3 cut(s)	260, 302, 376
BseSI	GKGCMC	1 cut(s)	129
BseX3I	CGGCCG	2 cut(s)	303, 748
BseXI	GCAGC	3 cut(s)	419, 619, 781
BseYI	CCCAGC	2 cut(s)	761, 812
Bsh1236I	CGCG	3 cut(s)	93, 144, 302
Bsh1285I	CGRYCG	2 cut(s)	306, 751
BshFI	GGCC	6 cut(s)	127, 156, 161, 185, 305, 750
BsiEI	CGRYCG	2 cut(s)	306, 751
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	781
BsiSI	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 472
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	6 cut(s)	127, 156, 161, 185, 305, 750
BsoBI	CYCGRG	1 cut(s)	781
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	63, 129
Bsp143I	GATC	2 cut(s)	138, 875
BspANI	GGCC	6 cut(s)	127, 156, 161, 185, 305, 750
BspCNI	CTCAG	3 cut(s)	610, 748, 869
BspFNI	CGCG	3 cut(s)	93, 144, 302
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	4 cut(s)	6, 127, 345, 508
BspPI	GGATC	1 cut(s)	133
BsrDI	GCAATG	3 cut(s)	394, 706, 730
BsrFI	RCCGGY	2 cut(s)	25, 305
BsrI	ACTGG	2 cut(s)	576, 657
BssAI	RCCGGY	2 cut(s)	25, 305
BssECI	CCNNGG	6 cut(s)	121, 231, 324, 450, 510, 754
BssMI	GATC	2 cut(s)	138, 875
BssT1I	CCWWGG	1 cut(s)	754
Bst2UI	CCWGG	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	866
BstDEI	CTNAG	3 cut(s)	618, 735, 856
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	4 cut(s)	81, 289, 580, 609
BstFNI	CGCG	3 cut(s)	93, 144, 302
BstH2I	RGCGCY	3 cut(s)	91, 762, 836
BstHHI	GCGC	3 cut(s)	90, 761, 835
BstKTI	GATC	2 cut(s)	141, 878
BstMBI	GATC	2 cut(s)	138, 875
BstMCI	CGRYCG	2 cut(s)	306, 751
BstMWI	GCNNNNNNNGC	8 cut(s)	78, 87, 247, 413, 428, 556, 750, 756
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	7 cut(s)	54, 67, 156, 180, 230, 323, 471
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	3 cut(s)	93, 144, 302
BstV1I	GCAGC	3 cut(s)	419, 619, 781
BstV2I	GAAGAC	1 cut(s)	233
BstZI	CGGCCG	2 cut(s)	303, 748
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	6 cut(s)	127, 156, 161, 185, 305, 750
BtgI	CCRYGG	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	4 cut(s)	81, 289, 580, 609
BtsIMutI	CAGTG	1 cut(s)	650
CaiI	CAGNNNCTG	2 cut(s)	256, 565
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	3 cut(s)	90, 761, 835
Cfr10I	RCCGGY	2 cut(s)	25, 305
Cfr13I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
CseI	GACGC	4 cut(s)	70, 133, 308, 355
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	3 cut(s)	618, 735, 856
DpnI	GATC	2 cut(s)	140, 877
DpnII	GATC	2 cut(s)	138, 875
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	2 cut(s)	303, 748
EagI	CGGCCG	2 cut(s)	303, 748
Eam1104I	CTCTTC	1 cut(s)	866
EarI	CTCTTC	1 cut(s)	866
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	2 cut(s)	303, 748
Eco130I	CCWWGG	1 cut(s)	754
Eco24I	GRGCYC	2 cut(s)	63, 129
Eco52I	CGGCCG	2 cut(s)	303, 748
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	781
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	754
EcoT38I	GRGCYC	2 cut(s)	63, 129
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	1 cut(s)	556
FaiI	YATR	4 cut(s)	99, 332, 554, 880
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	552
FauI	CCCGC	4 cut(s)	65, 793, 833, 857
Fnu4HI	GCNGC	7 cut(s)	91, 117, 303, 408, 608, 751, 770
FokI	GGATG	4 cut(s)	88, 296, 587, 616
FriOI	GRGCYC	2 cut(s)	63, 129
Fsp4HI	GCNGC	7 cut(s)	91, 117, 303, 408, 608, 751, 770
FspBI	CTAG	3 cut(s)	600, 755, 836
GlaI	GCGC	3 cut(s)	89, 760, 834
GluI	GCNGC	7 cut(s)	91, 117, 303, 408, 608, 751, 770
GsaI	CCCAGC	2 cut(s)	765, 816
HaeII	RGCGCY	3 cut(s)	91, 762, 836
HaeIII	GGCC	6 cut(s)	127, 156, 161, 185, 305, 750
HapII	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 472
HgaI	GACGC	4 cut(s)	70, 133, 308, 355
HhaI	GCGC	3 cut(s)	90, 761, 835
Hin1II	CATG	1 cut(s)	556
Hin6I	GCGC	3 cut(s)	88, 759, 833
HinP1I	GCGC	3 cut(s)	88, 759, 833
HincII	GTYRAC	2 cut(s)	31, 457
HindII	GTYRAC	2 cut(s)	31, 457
HinfI	GANTC	5 cut(s)	10, 107, 733, 779, 827
HpaII	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 472
HphI	GGTGA	2 cut(s)	247, 836
Hpy166II	GTNNAC	2 cut(s)	31, 457
Hpy188I	TCNGA	9 cut(s)	15, 39, 65, 223, 446, 520, 684, 738, 778
Hpy188III	TCNNGA	3 cut(s)	136, 553, 634
Hpy8I	GTNNAC	2 cut(s)	31, 457
Hpy99I	CGWCG	4 cut(s)	107, 116, 371, 630
HpyAV	CCTTC	4 cut(s)	202, 271, 584, 607
HpyCH4IV	ACGT	2 cut(s)	168, 625
HpyCH4V	TGCA	3 cut(s)	340, 407, 607
HpyF10VI	GCNNNNNNNGC	8 cut(s)	78, 87, 247, 413, 428, 556, 750, 756
HpyF3I	CTNAG	3 cut(s)	618, 735, 856
HpySE526I	ACGT	2 cut(s)	168, 625
Hsp92II	CATG	1 cut(s)	556
HspAI	GCGC	3 cut(s)	88, 759, 833
Kzo9I	GATC	2 cut(s)	138, 875
LmnI	GCTCC	6 cut(s)	40, 58, 66, 247, 289, 363
Lsp1109I	GCAGC	3 cut(s)	419, 619, 781
LweI	GCATC	3 cut(s)	394, 588, 594
MaeI	CTAG	3 cut(s)	600, 755, 836
MaeII	ACGT	2 cut(s)	168, 625
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	2 cut(s)	140, 877
MboI	GATC	2 cut(s)	138, 875
MboII	GAAGA	2 cut(s)	238, 682
MfeI	CAATTG	1 cut(s)	432
MhlI	GDGCHC	2 cut(s)	63, 129
MluCI	AATT	3 cut(s)	203, 319, 432
MlyI	GAGTC	3 cut(s)	101, 727, 773
MmeI	TCCRAC	2 cut(s)	88, 801
MroXI	GAANNNNTTC	1 cut(s)	9
MspA1I	CMGCKG	2 cut(s)	610, 864
MspI	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 472
MspR9I	CCNGG	7 cut(s)	56, 69, 158, 182, 232, 325, 473
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	3 cut(s)	93, 144, 302
MwoI	GCNNNNNNNGC	8 cut(s)	78, 87, 247, 413, 428, 556, 750, 756
NciI	CCSGG	6 cut(s)	56, 69, 158, 182, 232, 473
NdeII	GATC	2 cut(s)	138, 875
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	4 cut(s)	6, 127, 345, 508
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	706
PaeR7I	CTCGAG	1 cut(s)	781
PagI	TCATGA	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 48, 108
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	10, 827
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	7 cut(s)	92, 118, 304, 409, 609, 752, 771
PleI	GAGTC	3 cut(s)	101, 727, 773
PpsI	GAGTC	3 cut(s)	101, 727, 773
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	323
PspFI	CCCAGC	2 cut(s)	761, 812
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	6, 127, 345, 508
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	5 cut(s)	125, 126, 155, 160, 184
PspXI	VCTCGAGB	1 cut(s)	781
PstNI	CAGNNNCTG	2 cut(s)	256, 565
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	7 cut(s)	91, 117, 303, 408, 608, 751, 770
Sau3AI	GATC	2 cut(s)	138, 875
Sau96I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
SchI	GAGTC	3 cut(s)	101, 727, 773
ScrFI	CCNGG	7 cut(s)	56, 69, 158, 182, 232, 325, 473
SduI	GDGCHC	2 cut(s)	63, 129
SfaNI	GCATC	3 cut(s)	394, 588, 594
Sfr274I	CTCGAG	1 cut(s)	781
SlaI	CTCGAG	1 cut(s)	781
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
Sse9I	AATT	3 cut(s)	203, 319, 432
SspMI	CTAG	3 cut(s)	600, 755, 836
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	7 cut(s)	54, 67, 156, 180, 230, 323, 471
StyI	CCWWGG	1 cut(s)	754
TaiI	ACGT	2 cut(s)	171, 628
TaqI	TCGA	2 cut(s)	51, 782
TasI	AATT	3 cut(s)	203, 319, 432
TauI	GCSGC	4 cut(s)	93, 119, 305, 753
TfiI	GAWTC	2 cut(s)	10, 827
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	3 cut(s)	407, 607, 769
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	1 cut(s)	701
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	657
Tth111I	GACNNNGTC	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	781
XmaJI	CCTAGG	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	3 cut(s)	600, 755, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.