Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Forward (+)

39240267 .. 39242990

Gene Structure 2724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATCCGACTCCGAACGCTTCGCCGGTCAACGCTCCGAACAAGGACTTCGACCCGGAGCTCCGACCCGGCGGGATGTGCGTCCAGCGCCGCGACTATGACGGTGACTCCGCCGCCGCCGCCCGTGGGCCCAACATCACGATCCGCGTCAATCACGGCCCGGCCCACCACGTCATCAACCTCCCGGCCCACTCCACTTTCGGGGAATTGAAGGGACTTGTTTCAGAGAAGACCGGGGTGAAGCCGGAGGAGCAGAAGCTGTTGTTCAGGGGGAAAGAGAAGGAGGATGAGGAGCATTTAGACGCGGCCGGTGTGAGGGATAATTCCGGGGTTATGCTCTTGCAGGAACCGAAAAGGAAAGAGAGGAACGTTGGGGAGATGAATGAGAGCAATGAGATGTTGAGTGATGCAGCAGAGGCAAAGGCATTTGAAGCAATTGCTGGAGTCAGAGCCGAGGTTGACAGCCTCGCAGAGGGGGTTTCTGCTTTGGGTGTGGTTGTCAATGGTGGAACCAAGGTTTCCGATAAGGATTTTGCTGTATCAACAGAGTTGCTCATGAGGCAGTTGCTGAAACTGGATGGCATCAAAGCGGAAGGAGAAGCTAGGATGCAGCGGAAGGCTGAGTGGTGTATTGGCAATGCTGCTAAGTATGAGGAGGGATTCTCCGTTAGGATTCTATTTAGGCTTCTATATTTGGAAGTTAAAGAGTCACCAGGATTTTGTATTGCTGGGTGTGCGAGATCTATGAGGAAGGATGTGATGCATATGAATTGTTCTCAGTCCTTGCCTAGGCCAGCTGCTTGTGCAATTTGCAATGTACGTCGTGTCCAGAACCTTGTGGATACACTGGACACTCTAAAGGCGAAGAACTCCAATCCGATGAACAACAATAGCAATGGTGTGACTTCTCAAAATAGCAATGGTGTGGCTCCTCAGAACAGCAACGGTGTCACTTCACAAAATGGCAATGCTGTCTCCGTAACAACCAAATGGGAGACCTTTGACTCCGGCATGGGTAGCCTGAGTGCCCCAACCCCAATGCCATCTTCCACAGAAGTAACTGAGGACTGGGAGAAGTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

361

Amino Acids

39.08

Weight (kDa)

5.47

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	46 - 117	3e-10	Ubiquitin family
BAG	PF02179	146 - 207	6.6e-11	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	93, 147, 305
AclI	AACGTT	1 cut(s)	369
AclWI	GGATC	2 cut(s)	12, 136
AcoI	YGGCCR	1 cut(s)	306
AfaI	GTAC	1 cut(s)	819
AfiI	CCNNNNNNNGG	5 cut(s)	126, 201, 315, 472, 789
AgsI	TTSAA	2 cut(s)	211, 431
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	1030, 1062
AluBI	AGCT	4 cut(s)	61, 259, 602, 797
AluI	AGCT	4 cut(s)	61, 259, 602, 797
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	979, 989
AlwI	GGATC	2 cut(s)	12, 136
AlwNI	CAGNNNCTG	2 cut(s)	259, 568
AoxI	GGCC	6 cut(s)	128, 157, 162, 186, 306, 791
ApaI	GGGCCC	1 cut(s)	132
ApeKI	GCWGC	4 cut(s)	410, 610, 641, 797
AspA2I	CCTAGG	1 cut(s)	788
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	5 cut(s)	128, 129, 158, 163, 187
AsuC2I	CCSGG	6 cut(s)	56, 69, 161, 185, 235, 328
AsuHPI	GGTGA	3 cut(s)	116, 250, 702
AvrII	CCTAGG	1 cut(s)	788
BaeGI	GKGCMC	2 cut(s)	132, 1030
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	63, 132
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	4 cut(s)	422, 622, 628, 784
BccI	CCATC	2 cut(s)	572, 1051
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	714
BciVI	GTATCC	1 cut(s)	835
BcnI	CCSGG	6 cut(s)	56, 69, 161, 185, 235, 328
BcoDI	GTCTC	2 cut(s)	979, 989
BfaI	CTAG	2 cut(s)	603, 789
BfoI	RGCGCY	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	835
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	9 cut(s)	91, 114, 117, 120, 306, 411, 611, 642, 798
BlnI	CCTAGG	1 cut(s)	788
BlsI	GCNGC	9 cut(s)	92, 115, 118, 121, 307, 412, 612, 643, 799
Bme1390I	CCNGG	7 cut(s)	56, 69, 161, 185, 235, 328, 714
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	5 cut(s)	128, 129, 158, 163, 187
BmiI	GGNNCC	5 cut(s)	6, 130, 348, 511, 930
BmrFI	CCNGG	7 cut(s)	56, 69, 161, 185, 235, 328, 714
BmrI	ACTGGG	1 cut(s)	1078
BmsI	GCATC	4 cut(s)	397, 591, 597, 750
BmuI	ACTGGG	1 cut(s)	1078
BpiI	GAAGAC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpmI	CTGGAG	1 cut(s)	462
BpuMI	CCSGG	6 cut(s)	56, 69, 161, 185, 235, 328
BsaI	GGTCTC	1 cut(s)	989
BsaJI	CCNNGG	6 cut(s)	124, 234, 327, 453, 513, 788
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	5 cut(s)	126, 201, 315, 472, 789
Bse118I	RCCGGY	2 cut(s)	25, 308
Bse1I	ACTGG	3 cut(s)	579, 852, 1073
Bse3DI	GCAATG	6 cut(s)	397, 643, 820, 901, 925, 973
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	6 cut(s)	124, 234, 327, 453, 513, 788
BseGI	GGATG	5 cut(s)	81, 292, 583, 612, 760
BseLI	CCNNNNNNNGG	5 cut(s)	126, 201, 315, 472, 789
BseMI	GCAATG	6 cut(s)	397, 643, 820, 901, 925, 973
BseMII	CTCAG	5 cut(s)	612, 791, 947, 1013, 1053
BseNI	ACTGG	3 cut(s)	579, 852, 1073
BseRI	GAGGAG	4 cut(s)	263, 305, 668, 921
BseSI	GKGCMC	2 cut(s)	132, 1030
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	4 cut(s)	422, 622, 628, 784
BseYI	CCCAGC	1 cut(s)	728
Bsh1236I	CGCG	3 cut(s)	93, 147, 305
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	6 cut(s)	130, 159, 164, 188, 308, 793
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	5 cut(s)	126, 201, 315, 472, 789
BsmAI	GTCTC	2 cut(s)	979, 989
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	6 cut(s)	130, 159, 164, 188, 308, 793
Bso31I	GGTCTC	1 cut(s)	989
Bsp120I	GGGCCC	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	63, 132, 1030
Bsp143I	GATC	3 cut(s)	4, 141, 740
BspANI	GGCC	6 cut(s)	130, 159, 164, 188, 308, 793
BspCNI	CTCAG	5 cut(s)	613, 790, 946, 1014, 1054
BspFNI	CGCG	3 cut(s)	93, 147, 305
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	5 cut(s)	6, 130, 348, 511, 930
BspPI	GGATC	2 cut(s)	12, 136
BspTNI	GGTCTC	1 cut(s)	989
BsrDI	GCAATG	6 cut(s)	397, 643, 820, 901, 925, 973
BsrFI	RCCGGY	2 cut(s)	25, 308
BsrI	ACTGG	3 cut(s)	579, 852, 1073
BssAI	RCCGGY	2 cut(s)	25, 308
BssECI	CCNNGG	6 cut(s)	124, 234, 327, 453, 513, 788
BssMI	GATC	3 cut(s)	4, 141, 740
BssT1I	CCWWGG	2 cut(s)	513, 788
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	2 cut(s)	104, 947
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	6 cut(s)	621, 645, 777, 933, 1022, 1062
BstDSI	CCRYGG	1 cut(s)	124
BstENI	CCTNNNNNAGG	2 cut(s)	470, 787
BstF5I	GGATG	5 cut(s)	81, 292, 583, 612, 760
BstFNI	CGCG	3 cut(s)	93, 147, 305
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	7, 144, 743
BstMAI	GTCTC	2 cut(s)	979, 989
BstMBI	GATC	3 cut(s)	4, 141, 740
BstMCI	CGRYCG	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	714
BstSCI	CCNGG	7 cut(s)	54, 67, 159, 183, 233, 326, 712
BstSLI	GKGCMC	2 cut(s)	132, 1030
BstUI	CGCG	3 cut(s)	93, 147, 305
BstV1I	GCAGC	4 cut(s)	422, 622, 628, 784
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	2 cut(s)	4, 740
BstYI	RGATCY	2 cut(s)	4, 740
BstZI	CGGCCG	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	6 cut(s)	130, 159, 164, 188, 308, 793
BtgI	CCRYGG	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	5 cut(s)	81, 292, 583, 612, 760
BtsIMutI	CAGTG	1 cut(s)	845
Cac8I	GCNNGC	1 cut(s)	795
CaiI	CAGNNNCTG	2 cut(s)	259, 568
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	25, 308
Cfr13I	GGNCC	5 cut(s)	128, 129, 158, 163, 187
CseI	GACGC	3 cut(s)	70, 136, 311
Csp6I	GTAC	1 cut(s)	818
CviAII	CATG	2 cut(s)	556, 1012
CviQI	GTAC	1 cut(s)	818
DdeI	CTNAG	6 cut(s)	621, 645, 777, 933, 1022, 1062
DpnI	GATC	3 cut(s)	6, 143, 742
DpnII	GATC	3 cut(s)	4, 141, 740
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	513, 788
Eco24I	GRGCYC	2 cut(s)	63, 132
Eco31I	GGTCTC	1 cut(s)	989
Eco52I	CGGCCG	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	2 cut(s)	470, 787
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	513, 788
EcoT22I	ATGCAT	1 cut(s)	765
EcoT38I	GRGCYC	2 cut(s)	63, 132
ErhI	CCWWGG	2 cut(s)	513, 788
FaeI	CATG	2 cut(s)	559, 1015
FaiI	YATR	9 cut(s)	99, 335, 557, 651, 691, 746, 765, 767, 1013
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	2 cut(s)	555, 1011
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	765
Fnu4HI	GCNGC	9 cut(s)	91, 114, 117, 120, 306, 411, 611, 642, 798
FokI	GGATG	5 cut(s)	88, 299, 590, 619, 767
FriOI	GRGCYC	2 cut(s)	63, 132
Fsp4HI	GCNGC	9 cut(s)	91, 114, 117, 120, 306, 411, 611, 642, 798
FspBI	CTAG	2 cut(s)	603, 789
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	9 cut(s)	91, 114, 117, 120, 306, 411, 611, 642, 798
GsaI	CCCAGC	1 cut(s)	732
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	6 cut(s)	130, 159, 164, 188, 308, 793
HgaI	GACGC	3 cut(s)	70, 136, 311
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	559, 1015
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	2 cut(s)	31, 460
HindII	GTYRAC	2 cut(s)	31, 460
HinfI	GANTC	7 cut(s)	10, 107, 444, 660, 673, 707, 1004
HphI	GGTGA	3 cut(s)	116, 250, 702
Hpy166II	GTNNAC	2 cut(s)	31, 460
Hpy188I	TCNGA	9 cut(s)	9, 15, 39, 65, 226, 449, 523, 879, 936
Hpy188III	TCNNGA	3 cut(s)	139, 556, 829
Hpy8I	GTNNAC	2 cut(s)	31, 460
Hpy99I	CGWCG	1 cut(s)	825
HpyAV	CCTTC	5 cut(s)	205, 274, 587, 610, 745
HpyCH4III	ACNGT	2 cut(s)	104, 947
HpyCH4IV	ACGT	3 cut(s)	171, 369, 820
HpyCH4V	TGCA	6 cut(s)	343, 410, 610, 763, 806, 813
HpyF3I	CTNAG	6 cut(s)	621, 645, 777, 933, 1022, 1062
HpySE526I	ACGT	3 cut(s)	171, 369, 820
Hsp92II	CATG	2 cut(s)	559, 1015
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	4, 141, 740
LmnI	GCTCC	6 cut(s)	40, 58, 66, 250, 292, 934
Lsp1109I	GCAGC	4 cut(s)	422, 622, 628, 784
LweI	GCATC	4 cut(s)	397, 591, 597, 750
MaeI	CTAG	2 cut(s)	603, 789
MaeII	ACGT	3 cut(s)	171, 369, 820
MaeIII	GTNAC	6 cut(s)	104, 708, 901, 949, 979, 1057
MalI	GATC	3 cut(s)	6, 143, 742
MboI	GATC	3 cut(s)	4, 141, 740
MboII	GAAGA	3 cut(s)	241, 877, 1038
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	2 cut(s)	4, 740
MhlI	GDGCHC	3 cut(s)	63, 132, 1030
MluCI	AATT	5 cut(s)	206, 322, 435, 769, 807
MlyI	GAGTC	5 cut(s)	4, 101, 453, 716, 998
MmeI	TCCRAC	2 cut(s)	32, 88
Mph1103I	ATGCAT	1 cut(s)	765
MseI	TTAA	1 cut(s)	702
MspA1I	CMGCKG	2 cut(s)	613, 797
MspR9I	CCNGG	7 cut(s)	56, 69, 161, 185, 235, 328, 714
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	3 cut(s)	93, 147, 305
NciI	CCSGG	6 cut(s)	56, 69, 161, 185, 235, 328
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	3 cut(s)	4, 141, 740
NlaIII	CATG	2 cut(s)	559, 1015
NlaIV	GGNNCC	5 cut(s)	6, 130, 348, 511, 930
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	4 cut(s)	104, 708, 901, 949
NsiI	ATGCAT	1 cut(s)	765
PagI	TCATGA	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	660, 673
PkrI	GCNGC	9 cut(s)	92, 115, 118, 121, 307, 412, 612, 643, 799
PleI	GAGTC	5 cut(s)	4, 101, 452, 715, 998
PpsI	GAGTC	5 cut(s)	4, 101, 452, 715, 998
Psp124BI	GAGCTC	1 cut(s)	63
Psp1406I	AACGTT	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	712
PspFI	CCCAGC	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	5 cut(s)	6, 130, 348, 511, 930
PspOMI	GGGCCC	1 cut(s)	128
PspPI	GGNCC	5 cut(s)	128, 129, 158, 163, 187
PstNI	CAGNNNCTG	2 cut(s)	259, 568
PsuI	RGATCY	2 cut(s)	4, 740
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	1 cut(s)	819
RsaNI	GTAC	1 cut(s)	818
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	9 cut(s)	91, 114, 117, 120, 306, 411, 611, 642, 798
Sau3AI	GATC	3 cut(s)	4, 141, 740
Sau96I	GGNCC	5 cut(s)	128, 129, 158, 163, 187
SchI	GAGTC	5 cut(s)	4, 101, 453, 716, 998
ScrFI	CCNGG	7 cut(s)	56, 69, 161, 185, 235, 328, 714
SduI	GDGCHC	3 cut(s)	63, 132, 1030
SfaNI	GCATC	4 cut(s)	397, 591, 597, 750
Sse9I	AATT	5 cut(s)	206, 322, 435, 769, 807
SspMI	CTAG	2 cut(s)	603, 789
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	7 cut(s)	54, 67, 159, 183, 233, 326, 712
StyI	CCWWGG	2 cut(s)	513, 788
TaaI	ACNGT	2 cut(s)	104, 947
TaiI	ACGT	3 cut(s)	174, 372, 823
TaqI	TCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	206, 322, 435, 769, 807
TauI	GCSGC	5 cut(s)	93, 116, 119, 122, 308
TfiI	GAWTC	2 cut(s)	660, 673
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	852
TseFI	GTSAC	4 cut(s)	104, 708, 901, 949
TseI	GCWGC	4 cut(s)	410, 610, 641, 797
Tsp45I	GTSAC	4 cut(s)	104, 708, 901, 949
TspDTI	ATGAA	3 cut(s)	395, 782, 896
TspGWI	ACGGA	2 cut(s)	655, 967
TspRI	CASTG	1 cut(s)	852
XagI	CCTNNNNNAGG	2 cut(s)	470, 787
XmaJI	CCTAGG	1 cut(s)	788
XspI	CTAG	2 cut(s)	603, 789
Zsp2I	ATGCAT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.