Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002445

Physical Location & Seq

Genomic Coordinates Reverse (-)

9725048 .. 9728283

Gene Structure 3236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG118000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAACCGATTCCGAACGCTTCGCCGGTCAACGCTCCGAACGAGGACTTCGACCCGGAGCTCCGACCCGGCGGGATGTGCGTCCAGCGCCGCGACTATGACGACGACTCCGCCGCCGCCCGTGGGCCCAACATCACGATCCGCGTCTATCACGGCCCGGCCCACCACGTCATCAACCTCCCGGCCCACTCCACTTTCGGGGAATTGAAGGGACTTGTTTCAGAGAAGACCGGGGTGAAGCCGGAGGAGCAGAAGCTGTTGTTCAGGGGGAAAGAGAAGGAGGATGAGGAGCATTTAGACGTGGCCGGTGTGAGGGATAATTCCAGGGTTATGCTCTTGCAGGAACCGAAAAGGAAAGAGAGGAGCGTCGGGGAGTTGAATGAGAGCAATGAGATGTTGAGTGATGCAGCAGAGGCAAAGGCATTTGAAGCAATTGCTGAAGTCAGAGCCGAGGTTGACAGCCTCGCAGACCGGGTTTCTGTTTTGGGTGTGGCTGTCAGTGGTGGAACCGAGGTTTCCGATAAGGAGTTTGCTGTATCAACAGAGTTGCTCATGAGGCAGTTGCTGAAACTGGATGGCATCAAAGCGGAAGGAGAAGCTAGGATGCAGCGGAAGGCTGAGGTTTGCATCTTTAGCATTGCAGTTTCTGAATTGTCAAGTTTGACTTTCCATCATTTTGATCCTCAAGTTGTTAGTTTTGGTTTCGGTTGTTGTTTGATCTCATGGAAAATAATGTATTGTGTTTTATGCATCATACACCTATTCTTTTGTAACAAAAATTTTTCACCTGCTGGGATGTGGTGGATTCTTGCGTCCATTGATTGCGTTGACCACATGATGAAGTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009791 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

283

Amino Acids

31.39

Weight (kDa)

5.19

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	45 - 116	2.6e-10	Ubiquitin family
BAG	PF02179	145 - 208	6.1e-12	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51780
fragaria_vesca	FvH4_3g39130 FvH4_3g39130 FvH4_3g39130 FvH4_6g11020
malus_domestica	MD03G1063900.v1.1 MD04G1162100.v1.1 MD11G1067400.v1.1 MD12G1174600.v1.1
prunus_persica	Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G053300_v2.0.a1 Prupe.6G281800_v2.0.a1
pyrus_communis	pycom03g05150 pycom04g14510 pycom11g05680 pycom11g05690 pycom12g16510
rosa_chinensis	RchiOBHm_Chr3g0462361 RchiOBHm_Chr5g0070521
rosa_laevigata	RLG00000009417 RLG00000024863 RLG00000036138
rosa_multiflora	Rmu_sc0002134.1_g000002 Rmu_ssc0000431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010680 Rroxscaffold_6G00417550
rosa_rugosa	Rorug03G0056200 Rorug03G0056300 Rorug05G0406400 Rorug05G0406500.1
rosa_samantha	Rh3BG118000 Rh3CG120800 Rh3DG120000 Rh5AG462000 Rh5BG480100 Rh5CG504400 Rh5DG492100
rosa_wichuraiana	Rw3G009710 Rw5G043030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	796
Acc36I	ACCTGC	1 cut(s)	796
AccII	CGCG	2 cut(s)	93, 144
AciI	CCGC	8 cut(s)	72, 91, 111, 114, 117, 142, 587, 610
AclWI	GGATC	2 cut(s)	133, 674
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	778
AcuI	CTGAAG	1 cut(s)	459
AfiI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
AgsI	TTSAA	3 cut(s)	208, 379, 428
AjiI	CACGTC	2 cut(s)	169, 301
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	3 cut(s)	61, 256, 599
AluI	AGCT	3 cut(s)	61, 256, 599
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	133, 674
AlwNI	CAGNNNCTG	3 cut(s)	256, 565, 647
AoxI	GGCC	5 cut(s)	125, 154, 159, 183, 303
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	407, 607
ApoI	RAATTY	1 cut(s)	778
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
AsuC2I	CCSGG	6 cut(s)	56, 69, 158, 182, 232, 473
AsuHPI	GGTGA	2 cut(s)	247, 777
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	2 cut(s)	63, 129
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	419, 619
BccI	CCATC	2 cut(s)	569, 678
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	325
BcnI	CCSGG	6 cut(s)	56, 69, 158, 182, 232, 473
BfaI	CTAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	796
BisI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
BlsI	GCNGC	5 cut(s)	92, 115, 118, 409, 609
Bme1390I	CCNGG	7 cut(s)	56, 69, 158, 182, 232, 325, 473
BmgBI	CACGTC	2 cut(s)	169, 301
BmgT120I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
BmiI	GGNNCC	4 cut(s)	6, 127, 345, 508
BmrFI	CCNGG	7 cut(s)	56, 69, 158, 182, 232, 325, 473
BmsI	GCATC	5 cut(s)	394, 588, 594, 636, 759
BpiI	GAAGAC	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	669
BpuMI	CCSGG	6 cut(s)	56, 69, 158, 182, 232, 473
BsaJI	CCNNGG	5 cut(s)	121, 231, 324, 450, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 198, 312
Bse118I	RCCGGY	2 cut(s)	25, 305
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	2 cut(s)	394, 636
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	5 cut(s)	121, 231, 324, 450, 510
BseGI	GGATG	5 cut(s)	81, 289, 580, 609, 801
BseLI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
BseMI	GCAATG	2 cut(s)	394, 636
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	3 cut(s)	260, 302, 376
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	419, 619
BseYI	CCCAGC	1 cut(s)	791
Bsh1236I	CGCG	2 cut(s)	93, 144
BshFI	GGCC	5 cut(s)	127, 156, 161, 185, 305
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 472
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	123, 198, 312
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	5 cut(s)	127, 156, 161, 185, 305
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	63, 129
Bsp143I	GATC	3 cut(s)	138, 679, 717
BspACI	CCGC	8 cut(s)	72, 91, 111, 114, 117, 142, 587, 610
BspANI	GGCC	5 cut(s)	127, 156, 161, 185, 305
BspCNI	CTCAG	1 cut(s)	610
BspFNI	CGCG	2 cut(s)	93, 144
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	4 cut(s)	6, 127, 345, 508
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	2 cut(s)	133, 674
BsrDI	GCAATG	2 cut(s)	394, 636
BsrFI	RCCGGY	2 cut(s)	25, 305
BsrI	ACTGG	1 cut(s)	576
BssAI	RCCGGY	2 cut(s)	25, 305
BssECI	CCNNGG	5 cut(s)	121, 231, 324, 450, 510
BssMI	GATC	3 cut(s)	138, 679, 717
Bst2UI	CCWGG	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	618
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	5 cut(s)	81, 289, 580, 609, 801
BstFNI	CGCG	2 cut(s)	93, 144
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	141, 682, 720
BstMBI	GATC	3 cut(s)	138, 679, 717
BstMWI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 413, 428, 556, 633
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	7 cut(s)	54, 67, 156, 180, 230, 323, 471
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	2 cut(s)	93, 144
BstV1I	GCAGC	2 cut(s)	419, 619
BstV2I	GAAGAC	1 cut(s)	233
BsuRI	GGCC	5 cut(s)	127, 156, 161, 185, 305
BtgI	CCRYGG	1 cut(s)	121
BtrI	CACGTC	2 cut(s)	169, 301
BtsCI	GGATG	5 cut(s)	81, 289, 580, 609, 801
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	796
CaiI	CAGNNNCTG	3 cut(s)	256, 565, 647
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	25, 305
Cfr13I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
CseI	GACGC	4 cut(s)	70, 133, 355, 801
CviAII	CATG	4 cut(s)	553, 723, 835, 849
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	3 cut(s)	140, 681, 719
DpnII	GATC	3 cut(s)	138, 679, 717
EaeI	YGGCCR	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	63, 129
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	752
EcoT38I	GRGCYC	2 cut(s)	63, 129
FaeI	CATG	4 cut(s)	556, 726, 838, 852
FaiI	YATR	8 cut(s)	99, 332, 554, 724, 748, 755, 836, 850
FalI	AAGNNNNNCTT	2 cut(s)	649, 681
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	4 cut(s)	552, 722, 834, 848
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
FokI	GGATG	5 cut(s)	88, 296, 587, 616, 808
FriOI	GRGCYC	2 cut(s)	63, 129
Fsp4HI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
GsaI	CCCAGC	1 cut(s)	795
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	5 cut(s)	127, 156, 161, 185, 305
HapII	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 472
HgaI	GACGC	4 cut(s)	70, 133, 355, 801
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	556, 726, 838, 852
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	4 cut(s)	31, 457, 829, 846
HindII	GTYRAC	4 cut(s)	31, 457, 829, 846
HinfI	GANTC	3 cut(s)	10, 107, 805
HpaII	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 472
HphI	GGTGA	2 cut(s)	247, 777
Hpy166II	GTNNAC	4 cut(s)	31, 457, 829, 846
Hpy188I	TCNGA	7 cut(s)	15, 39, 65, 223, 446, 520, 649
Hpy188III	TCNNGA	2 cut(s)	136, 553
Hpy8I	GTNNAC	4 cut(s)	31, 457, 829, 846
Hpy99I	CGWCG	2 cut(s)	107, 371
HpyAV	CCTTC	4 cut(s)	202, 271, 584, 607
HpyCH4IV	ACGT	2 cut(s)	168, 300
HpyCH4V	TGCA	6 cut(s)	340, 407, 607, 627, 641, 750
HpyF10VI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 413, 428, 556, 633
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	2 cut(s)	168, 300
Hsp92II	CATG	4 cut(s)	556, 726, 838, 852
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	138, 679, 717
LmnI	GCTCC	6 cut(s)	40, 58, 66, 247, 289, 363
Lsp1109I	GCAGC	2 cut(s)	419, 619
LweI	GCATC	5 cut(s)	394, 588, 594, 636, 759
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	168, 300
MaeIII	GTNAC	1 cut(s)	770
MalI	GATC	3 cut(s)	140, 681, 719
MboI	GATC	3 cut(s)	138, 679, 717
MboII	GAAGA	1 cut(s)	238
MfeI	CAATTG	1 cut(s)	432
MhlI	GDGCHC	2 cut(s)	63, 129
MluCI	AATT	5 cut(s)	203, 319, 432, 650, 778
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	88
Mph1103I	ATGCAT	1 cut(s)	752
MroXI	GAANNNNTTC	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	9 cut(s)	26, 56, 69, 158, 182, 231, 242, 306, 472
MspR9I	CCNGG	7 cut(s)	56, 69, 158, 182, 232, 325, 473
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	2 cut(s)	93, 144
MwoI	GCNNNNNNNGC	7 cut(s)	78, 87, 247, 413, 428, 556, 633
NciI	CCSGG	6 cut(s)	56, 69, 158, 182, 232, 473
NdeII	GATC	3 cut(s)	138, 679, 717
NlaIII	CATG	4 cut(s)	556, 726, 838, 852
NlaIV	GGNNCC	4 cut(s)	6, 127, 345, 508
NmeAIII	GCCGAG	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	752
PagI	TCATGA	1 cut(s)	552
PaqCI	CACCTGC	1 cut(s)	796
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 48
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	10, 805
PkrI	GCNGC	5 cut(s)	92, 115, 118, 409, 609
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	6, 127, 345, 508
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	5 cut(s)	125, 126, 155, 160, 184
PstNI	CAGNNNCTG	3 cut(s)	256, 565, 647
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	5 cut(s)	91, 114, 117, 408, 608
Sau3AI	GATC	3 cut(s)	138, 679, 717
Sau96I	GGNCC	5 cut(s)	125, 126, 155, 160, 184
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	7 cut(s)	56, 69, 158, 182, 232, 325, 473
SduI	GDGCHC	2 cut(s)	63, 129
SfaNI	GCATC	5 cut(s)	394, 588, 594, 636, 759
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
Sse9I	AATT	5 cut(s)	203, 319, 432, 650, 778
SsiI	CCGC	8 cut(s)	72, 91, 111, 114, 117, 142, 587, 610
SspMI	CTAG	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	7 cut(s)	54, 67, 156, 180, 230, 323, 471
TaiI	ACGT	2 cut(s)	171, 303
TaqI	TCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	203, 319, 432, 650, 778
TauI	GCSGC	3 cut(s)	93, 116, 119
TfiI	GAWTC	2 cut(s)	10, 805
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	2 cut(s)	407, 607
TspRI	CASTG	1 cut(s)	505
XapI	RAATTY	1 cut(s)	778
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	600
Zsp2I	ATGCAT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.