AT3G56300

tRNA synthetase class I (C) family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
20880016 .. 20882366
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56300.1

Sequence Viewer

Length: 1470 bp
ATGTCGGAGATGGAGGTGGAGAAACCGGATTTGACATTGTACAACACAATGACTCAACTGAAGGAAGTTTATAAGCCGATGAATCCCGGCAAAATCGGAATCTATGTATGCGGTATCACCGCTTACGATTATAGCCACATTGGCCACGCTCGTGCCGCCGTGTCCTTCGACCTCCTTTACAGATACTTAAGGCACTTGGGTTATCAAGTTACTTATGTCAGAAATTTTACAGATGTTGATGACAAGGCTAAAAACTGTGGAGAGAAGCCGTTAGATTTGAGTAATCGCTTTTGCGAGGAGTATCTTTTAGATATGGCTGCTCTTCAGTGCCTCCTTCCCACCCACCAGCCTCGTGTCAGTGATCATATGGAACAGATCATTAAGATGATAGAAAAGATCATTGAGAATGGATGTGGGTATGCTGTGGGTGGTGATGTGTTCTTCTCAGTGGACAAATCACCGAGTTATGGTCAGTTATCTGGTCAACGGCTGGATCATACTCAAGCTGGTAAGCGTGTTGCTGTTGACTCAAGGAAGCGTAATCCTGCTGACTTTGCATTACGGAAGGCTGCAAAATCTGGTGAACCAAGTTGGGAGAGCCCTTGGGGTCATGGAAGACCAGGATGGCACATCGAGTTTGACATTCATGGTGGTGGCGCAGATCTCAAATTCCCGCACCATGAAAATGAGATCGCCCAGACATGTGCTGCTTGTGAAGATAGTGGTGTGAACTACTGGTTGCATAACGGGCATGTCACCAACAACAATGTGAAGATGGGAAAATCATTGAACAACTTTTTTACGATTAGACAAATCGCGGCTAACTATCATCCACTGGCTTTGAGACATTTCTTGATGAGTGCACAGTACCGTTCTCCTCTCAACTATTCGGTTTCGCAGCTTGAGAGTTCATCGGATGCTTTATACTCTCTATCGCCATATCGAGAAGAAATGAGTGGAGATGTTGGAAAGACTCAACAGTCTGCAGAAGCCAAAGAGATGATAAAGAAGGTGAAAAACGCATTGAAATTCATCAACGTTTCAATCTCCAAGCTCAAGAAAATGCAGAAGAAGCAGCGGATGTCGCTGGTAGTGTCACTGGTCGAGGTTGAGAAGGCAGTGAGGGAAGTTCTTGATGTGCTTGGTTTGCTCACGACTCTAAGCTACGGTGAGCTTTTGAAAGACATGAAACAAAAGGCATTAACAAGAGCAGGAATGGGAGAAGAAGAGGTCTTGCAGAGGATTGAAGAAAGGAATATGGCCCGGAAGAGCAAAGATTTCAGGAGAAGCGATCGGATTCGAGAGCTGTTGGCATTTAAAGGAATCTTCCTCGAGGATGTTCCTGGAGACACTGTGTGGAGACCTTCCACCCCATTGACCAAGCCTAAATCTGGTTTAGGTTTAGGCATGACAGCCATCGTTTTTGCTATCGTTTTTACTTTCTTAGGCTTCTTCTTCTATAGCCGTTGA

Protein Analysis

489

Amino Acids

55.35

Weight (kDa)

8.88

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 25 - 304 5e-105 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AasI GACNNNNNNGTC 1 cut(s) 979
AbsI CCTCGAGG 1 cut(s) 1331
AccII CGCG 1 cut(s) 818
AciI CCGC 6 cut(s) 111, 120, 156, 674, 818, 1078
AclI AACGTT 1 cut(s) 1038
AclWI GGATC 1 cut(s) 501
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 3 cut(s) 223, 668, 1028
AcuI CTGAAG 2 cut(s) 80, 308
AdeI CACNNNGTG 1 cut(s) 1356
AfaI GTAC 2 cut(s) 41, 869
AfiI CCNNNNNNNGG 2 cut(s) 467, 1391
AflII CTTAAG 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 701
AgsI TTSAA 5 cut(s) 790, 1027, 1044, 1180, 1247
AjnI CCWGG 2 cut(s) 619, 1342
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 6 cut(s) 506, 901, 1054, 1164, 1174, 1306
AluI AGCT 6 cut(s) 506, 901, 1054, 1164, 1174, 1306
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 3 cut(s) 838, 1341, 1354
Alw44I GTGCAC 1 cut(s) 861
AlwI GGATC 1 cut(s) 501
Ama87I CYCGRG 1 cut(s) 1331
AoxI GGCC 2 cut(s) 142, 1260
ApaLI GTGCAC 1 cut(s) 861
ApeKI GCWGC 5 cut(s) 317, 569, 707, 898, 1075
ApoI RAATTY 3 cut(s) 223, 668, 1028
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 1 cut(s) 1261
AsuC2I CCSGG 2 cut(s) 87, 1264
AsuHPI GGTGA 7 cut(s) 109, 443, 450, 593, 748, 1024, 1181
AvaI CYCGRG 1 cut(s) 1331
BaeGI GKGCMC 1 cut(s) 865
BalI TGGCCA 1 cut(s) 144
BanII GRGCYC 1 cut(s) 602
BauI CACGAG 2 cut(s) 150, 351
BbsI GAAGAC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 865
BbvI GCAGC 5 cut(s) 304, 556, 694, 910, 1087
BccI CCATC 4 cut(s) 4, 618, 769, 1424
BceAI ACGGC 4 cut(s) 143, 253, 503, 1449
BciT130I CCWGG 2 cut(s) 621, 1344
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 2 cut(s) 87, 1264
BcoDI GTCTC 3 cut(s) 838, 1341, 1354
BfmI CTRYAG 2 cut(s) 984, 1459
BfrI CTTAAG 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 141
BglII AGATCT 1 cut(s) 661
BisI GCNGC 7 cut(s) 156, 318, 570, 708, 819, 899, 1076
BlsI GCNGC 7 cut(s) 157, 319, 571, 709, 820, 900, 1077
Bme1390I CCNGG 4 cut(s) 87, 621, 1264, 1344
BmeT110I CYCGRG 1 cut(s) 1331
BmgT120I GGNCC 1 cut(s) 1261
BmrFI CCNGG 4 cut(s) 87, 621, 1264, 1344
BmsI GCATC 1 cut(s) 907
BpiI GAAGAC 1 cut(s) 622
BpmI CTGGAG 1 cut(s) 1365
BpuEI CTTGAG 4 cut(s) 486, 514, 923, 1040
BpuMI CCSGG 2 cut(s) 87, 1264
BsaI GGTCTC 1 cut(s) 1354
BsaJI CCNNGG 1 cut(s) 602
BsaWI WCCGGW 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 1338, 1368
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 1391
Bse1I ACTGG 3 cut(s) 740, 840, 1104
BseBI CCWGG 2 cut(s) 621, 1344
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 6 cut(s) 416, 629, 829, 922, 1086, 1342
BseLI CCNNNNNNNGG 2 cut(s) 467, 1391
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 3 cut(s) 740, 840, 1104
BseRI GAGGAG 2 cut(s) 311, 867
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 5 cut(s) 304, 556, 694, 910, 1087
Bsh1236I CGCG 1 cut(s) 818
Bsh1285I CGRYCG 1 cut(s) 1294
BshFI GGCC 2 cut(s) 144, 1262
BsiEI CGRYCG 1 cut(s) 1294
BsiHKAI GWGCWC 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 1331
BsiSI CCGG 3 cut(s) 26, 87, 1264
BslI CCNNNNNNNGG 2 cut(s) 467, 1391
BsmAI GTCTC 3 cut(s) 838, 1341, 1354
BsnI GGCC 2 cut(s) 144, 1262
Bso31I GGTCTC 1 cut(s) 1354
BsoBI CYCGRG 1 cut(s) 1331
Bsp1286I GDGCHC 2 cut(s) 602, 865
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 7 cut(s) 361, 375, 396, 493, 661, 690, 1291
BspACI CCGC 6 cut(s) 111, 120, 156, 674, 818, 1078
BspANI GGCC 2 cut(s) 144, 1262
BspCNI CTCAG 1 cut(s) 458
BspFNI CGCG 1 cut(s) 818
BspMAI CTGCAG 1 cut(s) 988
BspPI GGATC 1 cut(s) 501
BspQI GCTCTTC 2 cut(s) 327, 1262
BspTI CTTAAG 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 1354
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 3 cut(s) 740, 840, 1104
BssECI CCNNGG 1 cut(s) 602
BssMI GATC 7 cut(s) 361, 375, 396, 493, 661, 690, 1291
BssSI CACGAG 2 cut(s) 150, 351
BssT1I CCWWGG 1 cut(s) 602
Bst2BI CACGAG 2 cut(s) 150, 351
Bst2UI CCWGG 2 cut(s) 621, 1344
Bst4CI ACNGT 6 cut(s) 257, 867, 872, 981, 1169, 1354
Bst6I CTCTTC 3 cut(s) 327, 1221, 1262
BstAFI CTTAAG 1 cut(s) 187
BstAUI TGTACA 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 445, 1160, 1444
BstF5I GGATG 6 cut(s) 416, 629, 829, 922, 1086, 1342
BstFNI CGCG 1 cut(s) 818
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 7 cut(s) 364, 378, 399, 496, 664, 693, 1294
BstMAI GTCTC 3 cut(s) 838, 1341, 1354
BstMBI GATC 7 cut(s) 361, 375, 396, 493, 661, 690, 1291
BstMCI CGRYCG 1 cut(s) 1294
BstMWI GCNNNNNNNGC 7 cut(s) 141, 155, 554, 748, 1072, 1084, 1147
BstNI CCWGG 2 cut(s) 621, 1344
BstNSI RCATGY 2 cut(s) 705, 755
BstSCI CCNGG 4 cut(s) 85, 619, 1262, 1342
BstSFI CTRYAG 2 cut(s) 984, 1459
BstSLI GKGCMC 1 cut(s) 865
BstUI CGCG 1 cut(s) 818
BstV1I GCAGC 5 cut(s) 304, 556, 694, 910, 1087
BstV2I GAAGAC 1 cut(s) 622
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 2 cut(s) 144, 1262
BtsCI GGATG 6 cut(s) 416, 629, 829, 922, 1086, 1342
BtsI GCAGTG 1 cut(s) 1125
BtsIMutI CAGTG 7 cut(s) 332, 364, 453, 833, 1097, 1125, 1350
CfoI GCGC 1 cut(s) 659
Cfr13I GGNCC 1 cut(s) 1261
Csp6I GTAC 2 cut(s) 40, 868
CspCI CAANNNNNGTGG 2 cut(s) 822, 857
CviAII CATG 7 cut(s) 611, 647, 680, 702, 752, 1186, 1408
CviQI GTAC 2 cut(s) 40, 868
DdeI CTNAG 3 cut(s) 445, 1160, 1444
DpnI GATC 7 cut(s) 363, 377, 398, 495, 663, 692, 1293
DpnII GATC 7 cut(s) 361, 375, 396, 493, 661, 690, 1291
DraI TTTAAA 1 cut(s) 1318
DraIII CACNNNGTG 1 cut(s) 1356
DrdI GACNNNNNNGTC 1 cut(s) 979
DseDI GACNNNNNNGTC 1 cut(s) 979
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 3 cut(s) 327, 1221, 1262
EarI CTCTTC 3 cut(s) 327, 1221, 1262
Eco130I CCWWGG 1 cut(s) 602
Eco24I GRGCYC 1 cut(s) 602
Eco31I GGTCTC 1 cut(s) 1354
Eco57I CTGAAG 2 cut(s) 80, 308
Eco88I CYCGRG 1 cut(s) 1331
EcoRII CCWGG 2 cut(s) 619, 1342
EcoT14I CCWWGG 1 cut(s) 602
EcoT38I GRGCYC 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 7 cut(s) 614, 650, 683, 705, 755, 1189, 1411
FatI CATG 7 cut(s) 610, 646, 679, 701, 751, 1185, 1407
FauI CCCGC 1 cut(s) 681
FauNDI CATATG 1 cut(s) 366
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 7 cut(s) 156, 318, 570, 708, 819, 899, 1076
FokI GGATG 6 cut(s) 423, 636, 816, 929, 1093, 1349
FriOI GRGCYC 1 cut(s) 602
Fsp4HI GCNGC 7 cut(s) 156, 318, 570, 708, 819, 899, 1076
GlaI GCGC 1 cut(s) 658
GluI GCNGC 7 cut(s) 156, 318, 570, 708, 819, 899, 1076
GsuI CTGGAG 1 cut(s) 1365
HaeIII GGCC 2 cut(s) 144, 1262
HapII CCGG 3 cut(s) 26, 87, 1264
HhaI GCGC 1 cut(s) 659
Hin1II CATG 7 cut(s) 614, 650, 683, 705, 755, 1189, 1411
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HincII GTYRAC 2 cut(s) 485, 526
HindII GTYRAC 2 cut(s) 485, 526
HinfI GANTC 8 cut(s) 52, 82, 99, 527, 973, 1156, 1297, 1323
HpaII CCGG 3 cut(s) 26, 87, 1264
HphI GGTGA 7 cut(s) 109, 443, 450, 593, 748, 1024, 1181
Hpy166II GTNNAC 6 cut(s) 451, 485, 526, 584, 730, 863
Hpy188I TCNGA 5 cut(s) 7, 98, 221, 916, 1296
Hpy188III TCNNGA 7 cut(s) 853, 944, 1057, 1133, 1153, 1282, 1301
Hpy8I GTNNAC 6 cut(s) 451, 485, 526, 584, 730, 863
HpyAV CCTTC 7 cut(s) 55, 175, 344, 559, 1003, 1108, 1374
HpyCH4III ACNGT 6 cut(s) 257, 867, 872, 981, 1169, 1354
HpyCH4IV ACGT 1 cut(s) 1038
HpyCH4V TGCA 7 cut(s) 557, 572, 742, 863, 986, 1066, 1237
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 155, 554, 748, 1072, 1084, 1147
HpyF3I CTNAG 3 cut(s) 445, 1160, 1444
HpySE526I ACGT 1 cut(s) 1038
Hsp92II CATG 7 cut(s) 614, 650, 683, 705, 755, 1189, 1411
HspAI GCGC 1 cut(s) 657
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 7 cut(s) 361, 375, 396, 493, 661, 690, 1291
LguI GCTCTTC 2 cut(s) 327, 1262
Lsp1109I GCAGC 5 cut(s) 304, 556, 694, 910, 1087
LweI GCATC 1 cut(s) 907
MaeII ACGT 1 cut(s) 1038
MaeIII GTNAC 3 cut(s) 208, 754, 1095
MalI GATC 7 cut(s) 363, 377, 398, 495, 663, 692, 1293
MboI GATC 7 cut(s) 361, 375, 396, 493, 661, 690, 1291
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 2 cut(s) 602, 865
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 3 cut(s) 223, 668, 1028
MluNI TGGCCA 1 cut(s) 144
MlyI GAGTC 4 cut(s) 46, 521, 967, 1150
MmeI TCCRAC 1 cut(s) 946
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 4 cut(s) 188, 381, 1202, 1317
MslI CAYNNNNRTG 4 cut(s) 150, 383, 651, 684
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 1078
MspCI CTTAAG 1 cut(s) 187
MspI CCGG 3 cut(s) 26, 87, 1264
MspR9I CCNGG 4 cut(s) 87, 621, 1264, 1344
MvaI CCWGG 2 cut(s) 621, 1344
MvnI CGCG 1 cut(s) 818
MwoI GCNNNNNNNGC 7 cut(s) 141, 155, 554, 748, 1072, 1084, 1147
NciI CCSGG 2 cut(s) 87, 1264
NdeI CATATG 1 cut(s) 366
NdeII GATC 7 cut(s) 361, 375, 396, 493, 661, 690, 1291
NlaIII CATG 7 cut(s) 614, 650, 683, 705, 755, 1189, 1411
NmuCI GTSAC 2 cut(s) 754, 1095
NspI RCATGY 2 cut(s) 705, 755
OliI CACNNNNGTG 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 1331
PciI ACATGT 1 cut(s) 701
PciSI GCTCTTC 2 cut(s) 327, 1262
PfeI GAWTC 4 cut(s) 82, 99, 1297, 1323
PfoI TCCNGGA 1 cut(s) 1342
PkrI GCNGC 7 cut(s) 157, 319, 571, 709, 820, 900, 1077
Ple19I CGATCG 1 cut(s) 1294
PleI GAGTC 4 cut(s) 46, 521, 967, 1150
PpsI GAGTC 4 cut(s) 46, 521, 967, 1150
PscI ACATGT 1 cut(s) 701
PsiI TTATAA 1 cut(s) 72
Psp1406I AACGTT 1 cut(s) 1038
Psp6I CCWGG 2 cut(s) 619, 1342
PspGI CCWGG 2 cut(s) 619, 1342
PspPI GGNCC 1 cut(s) 1261
PspXI VCTCGAGB 1 cut(s) 1331
PstI CTGCAG 1 cut(s) 988
PsuI RGATCY 1 cut(s) 661
PvuI CGATCG 1 cut(s) 1294
RsaI GTAC 2 cut(s) 41, 869
RsaNI GTAC 2 cut(s) 40, 868
RseI CAYNNNNRTG 4 cut(s) 150, 383, 651, 684
SapI GCTCTTC 2 cut(s) 327, 1262
SaqAI TTAA 4 cut(s) 188, 381, 1202, 1317
SatI GCNGC 7 cut(s) 156, 318, 570, 708, 819, 899, 1076
Sau3AI GATC 7 cut(s) 361, 375, 396, 493, 661, 690, 1291
Sau96I GGNCC 1 cut(s) 1261
SchI GAGTC 4 cut(s) 46, 521, 967, 1150
ScrFI CCNGG 4 cut(s) 87, 621, 1264, 1344
SduI GDGCHC 2 cut(s) 602, 865
SfaNI GCATC 1 cut(s) 907
SfcI CTRYAG 2 cut(s) 984, 1459
Sfr274I CTCGAG 1 cut(s) 1331
SlaI CTCGAG 1 cut(s) 1331
SmiMI CAYNNNNRTG 4 cut(s) 150, 383, 651, 684
SmlI CTYRAG 6 cut(s) 187, 501, 529, 902, 1055, 1331
SmoI CTYRAG 6 cut(s) 187, 501, 529, 902, 1055, 1331
Sse9I AATT 3 cut(s) 223, 668, 1028
SsiI CCGC 6 cut(s) 111, 120, 156, 674, 818, 1078
StyD4I CCNGG 4 cut(s) 85, 619, 1262, 1342
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 6 cut(s) 257, 867, 872, 981, 1169, 1354
TaiI ACGT 1 cut(s) 1041
TaqI TCGA 6 cut(s) 168, 633, 943, 1104, 1300, 1332
TasI AATT 3 cut(s) 223, 668, 1028
TatI WGTACW 1 cut(s) 39
TauI GCSGC 2 cut(s) 158, 821
TfiI GAWTC 4 cut(s) 82, 99, 1297, 1323
Tru1I TTAA 4 cut(s) 188, 381, 1202, 1317
Tru9I TTAA 4 cut(s) 188, 381, 1202, 1317
TscAI CASTG 7 cut(s) 332, 364, 453, 840, 1104, 1125, 1357
TseFI GTSAC 2 cut(s) 754, 1095
TseI GCWGC 5 cut(s) 317, 569, 707, 898, 1075
Tsp45I GTSAC 2 cut(s) 754, 1095
TspDTI ATGAA 6 cut(s) 95, 635, 696, 900, 1021, 1202
TspGWI ACGGA 1 cut(s) 577
TspRI CASTG 7 cut(s) 332, 364, 453, 840, 1104, 1125, 1357
Vha464I CTTAAG 1 cut(s) 187
VneI GTGCAC 1 cut(s) 861
XapI RAATTY 3 cut(s) 223, 668, 1028
XceI RCATGY 2 cut(s) 705, 755
XhoI CTCGAG 1 cut(s) 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.