RchiOBHm_Chr2g0088831

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
3222104 .. 3222514
411 bp
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UTR
Exon/CDS
Intron
PRQ46413

Sequence Viewer

Length: 189 bp
ATGAGATTAGAGAGTCCCCGCATCAGCTCCCGACCTTCTTACTTGGGGGTTCTCATCGGACTGTGGAAGCACGGGCTTCAACAACGCATTAGTCTCTCCTTCCCTTTCGCGCGCTTCAACCTCGCCTCTCCTTCTCTTTCGCGCTTCAGCCTCGTCTCTCCACTCTCGATCGTGCATCATCCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.98

Weight (kDa)

12.0

Isoelectric Point (pI)

68.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 110, 112, 142
AciI CCGC 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 80, 118
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 98, 160
AspLEI GCGC 3 cut(s) 112, 114, 144
BcoDI GTCTC 2 cut(s) 98, 160
BmsI GCATC 2 cut(s) 30, 184
BseGI GGATG 1 cut(s) 178
BsePI GCGCGC 1 cut(s) 110
Bsh1236I CGCG 3 cut(s) 110, 112, 142
Bsh1285I CGRYCG 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 171
BsmAI GTCTC 2 cut(s) 98, 160
BsmBI CGTCTC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 1 cut(s) 19
BspFNI CGCG 3 cut(s) 110, 112, 142
BssHII GCGCGC 1 cut(s) 110
BssMI GATC 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 3 cut(s) 110, 112, 142
BstHHI GCGC 3 cut(s) 112, 114, 144
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 2 cut(s) 98, 160
BstMBI GATC 1 cut(s) 168
BstMCI CGRYCG 1 cut(s) 171
BstUI CGCG 3 cut(s) 110, 112, 142
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 3 cut(s) 112, 114, 144
CviJI RGCY 3 cut(s) 27, 76, 150
CviKI_1 RGCY 3 cut(s) 27, 76, 150
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 160
FauI CCCGC 1 cut(s) 26
FokI GGATG 1 cut(s) 165
GlaI GCGC 3 cut(s) 111, 113, 143
HhaI GCGC 3 cut(s) 112, 114, 144
Hin6I GCGC 3 cut(s) 110, 112, 142
HinP1I GCGC 3 cut(s) 110, 112, 142
HinfI GANTC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 30, 166
HpyAV CCTTC 3 cut(s) 45, 109, 141
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 175
HspAI GCGC 3 cut(s) 110, 112, 142
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 32
LweI GCATC 2 cut(s) 30, 184
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 3 cut(s) 131, 136, 161
MvnI CGCG 3 cut(s) 110, 112, 142
NdeII GATC 1 cut(s) 168
PauI GCGCGC 1 cut(s) 110
Ple19I CGATCG 1 cut(s) 171
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PteI GCGCGC 1 cut(s) 110
PvuI CGATCG 1 cut(s) 171
Sau3AI GATC 1 cut(s) 168
SchI GAGTC 1 cut(s) 22
SetI ASST 3 cut(s) 29, 37, 123
SfaNI GCATC 2 cut(s) 30, 184
SsiI CCGC 1 cut(s) 19
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.