Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Forward (+)

12664848 .. 12665183

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAAGATCTCCAGTGCTGCACTCCAACCCATGAGCCACGTGTTTCTGATCACATGGAACAGATAATAGATATGGTAACACAGATCATCAACAATGACTATGCGTACGTAGTTGATGGGGATGTGTTCTTTGCTGTTGAGAAGTTTCCAAATTATGGGCAATTATCTAAACAAAAGCTGGAACATATTAGGGCGGGTGCACGAGTTTGTATTGATTCAAGAAAACGCAATCCTGCAGACTTCGCATTGTGGAAGTCTGAAAAGCCTGGAGAGCCAAGCTGGGACAGCCTTGGGGGAGAGGAAGGCCGGGGTGGCACATTGAGTGCAGTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

112

Amino Acids

12.44

Weight (kDa)

4.94

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	1 - 104	3.3e-30	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	1 cut(s)	194
AcvI	CACGTG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	2 cut(s)	178, 279
AluI	AGCT	2 cut(s)	178, 279
Alw21I	GWGCWC	1 cut(s)	202
Alw44I	GTGCAC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	304
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	201
BbrPI	CACGTG	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	312
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	267, 308
BmrFI	CCNGG	2 cut(s)	267, 308
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	2 cut(s)	41, 109
BsaJI	CCNNGG	2 cut(s)	289, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	289, 307
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	5
BseYI	CCCAGC	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	4
BshFI	GGCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	307
BsiWI	CGTACG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	7, 49, 84
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	289, 307
BssMI	GATC	3 cut(s)	7, 49, 84
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	267
BstBAI	YACGTR	2 cut(s)	41, 109
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	3 cut(s)	10, 52, 87
BstMBI	GATC	3 cut(s)	7, 49, 84
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 271, 285, 312
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	265, 306
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	202
BstSNI	TACGTA	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	20, 333
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	3 cut(s)	32, 55, 333
CviJI	RGCY	7 cut(s)	37, 178, 265, 274, 279, 288, 306
CviKI_1	RGCY	7 cut(s)	37, 178, 265, 274, 279, 288, 306
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	3 cut(s)	9, 51, 86
DpnII	GATC	3 cut(s)	7, 49, 84
Eco105I	TACGTA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	289
Eco72I	CACGTG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	3 cut(s)	35, 58, 336
FaiI	YATR	7 cut(s)	33, 56, 74, 102, 156, 186, 334
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	3 cut(s)	31, 54, 332
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	19
GsaI	CCCAGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	3 cut(s)	35, 58, 336
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	49, 259
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	296
HpyCH4IV	ACGT	2 cut(s)	40, 108
HpyCH4V	TGCA	4 cut(s)	21, 200, 236, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 271, 285, 312
HpySE526I	ACGT	2 cut(s)	40, 108
Hsp92II	CATG	3 cut(s)	35, 58, 336
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	7, 49, 84
LpnPI	CCDG	7 cut(s)	26, 164, 246, 252, 265, 279, 320
Lsp1109I	GCAGC	1 cut(s)	5
MaeII	ACGT	2 cut(s)	40, 108
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	9, 51, 86
MboI	GATC	3 cut(s)	7, 49, 84
MboII	GAAGA	1 cut(s)	17
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	151, 161
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	1 cut(s)	292
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	267, 308
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	242, 271, 285, 312
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	7, 49, 84
NlaIII	CATG	3 cut(s)	35, 58, 336
PfeI	GAWTC	1 cut(s)	215
Pfl23II	CGTACG	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	20
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
Ppu21I	YACGTR	2 cut(s)	41, 109
Psp6I	CCWGG	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	265
PspLI	CGTACG	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	3 cut(s)	7, 49, 84
ScrFI	CCNGG	2 cut(s)	267, 308
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	4 cut(s)	43, 111, 180, 281
SfcI	CTRYAG	1 cut(s)	234
SnaBI	TACGTA	1 cut(s)	109
Sse9I	AATT	2 cut(s)	151, 161
SsiI	CCGC	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	265, 306
StyI	CCWWGG	1 cut(s)	289
TaiI	ACGT	2 cut(s)	43, 111
TasI	AATT	2 cut(s)	151, 161
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	2 cut(s)	20, 333
TseI	GCWGC	1 cut(s)	18
TspRI	CASTG	2 cut(s)	20, 333
Van91I	CCANNNNNTGG	1 cut(s)	155
VneI	GTGCAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.