Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Reverse (-)

1646597 .. 1649235

Gene Structure 2639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGCAAATAAGAGTGGAGAATCAAGTAATCGGTTTTGAGAAAAAATATAAAAATGACATGAAAGATCTCCAATGCCTTGATCCAACCTATCAGCCGCGTGTTTCTGATCACATGGATCAGATAATAGATATGACAACACAGATCGTCGACAATGAATATGCCTACGTAGTTGATGGGGATGTATTCTTTGCTGTTGAGAAATTCCCAAATTATGGGCAATTATCTAGACAAAATTTGGAACATATTAGGGCGGATTTTGCATTGTGGAAGTCTGCAAAGCCTGGAGAGCCAGAATGGAAAAGCCCTTGGGGACCAGGAAGGCCGGGGTGGCACATTGAATACAGTGCCATGAGTGCTCGTTATCTTACATACAAGTTTAATATTCATGGTGGTGGTATTGACATGATTTTTCCGCATCATGAAAACGAGATCGCTCAAAGTGGTGCTGCATGCCAGGAGGCTTGTGTCAGTTATTGGTTGCACAACGGTCATGTTACTAAGGATAATGAGAAAATGTCAAAATCATTTGGGAACTTTTCCACAATTCGTCAGATTACTGAAATATATCACCCACTGTCTTTGAGACACTCCTTGTTAAGTGCGCACTATAGATCTCCACTCAATTACAGTGAATCCCAGCTGGATAGTGCATCAACCGCTGTCTATTACATATGTCAGACTTTGCAAGAGTGTGAAGATGCTTTATCTCCATTTCAAGAAGAGGTCTGGAAGGAAGACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

248

Amino Acids

28.7

Weight (kDa)

5.24

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	10 - 218	9.9e-81	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	606
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	100
AciI	CCGC	4 cut(s)	98, 254, 416, 660
AclWI	GGATC	2 cut(s)	77, 126
AcsI	RAATTY	2 cut(s)	203, 235
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	341, 719
AjnI	CCWGG	3 cut(s)	283, 316, 456
AluBI	AGCT	1 cut(s)	643
AluI	AGCT	1 cut(s)	643
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	2 cut(s)	77, 126
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	203, 235
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	3 cut(s)	285, 318, 458
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	580
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	331
BglII	AGATCT	2 cut(s)	67, 614
BisI	GCNGC	2 cut(s)	98, 450
BlsI	GCNGC	2 cut(s)	99, 451
Bme1390I	CCNGG	4 cut(s)	285, 318, 327, 458
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	4 cut(s)	285, 318, 327, 458
BmsI	GCATC	3 cut(s)	427, 662, 691
BpmI	CTGGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	308, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
BseBI	CCWGG	3 cut(s)	285, 318, 458
BseDI	CCNNGG	2 cut(s)	308, 326
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	7 cut(s)	67, 82, 109, 118, 144, 432, 614
BspACI	CCGC	4 cut(s)	98, 254, 416, 660
BspANI	GGCC	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	2 cut(s)	77, 126
BssECI	CCNNGG	2 cut(s)	308, 326
BssMI	GATC	7 cut(s)	67, 82, 109, 118, 144, 432, 614
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	3 cut(s)	285, 318, 458
Bst4CI	ACNGT	4 cut(s)	347, 491, 579, 632
Bst6I	CTCTTC	1 cut(s)	717
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	7 cut(s)	70, 85, 112, 121, 147, 435, 617
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	7 cut(s)	67, 82, 109, 118, 144, 432, 614
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 289, 331, 356, 659
BstNI	CCWGG	3 cut(s)	285, 318, 458
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	4 cut(s)	283, 316, 325, 456
BstSFI	CTRYAG	1 cut(s)	610
BstSNI	TACGTA	1 cut(s)	169
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	436
BstX2I	RGATCY	2 cut(s)	67, 614
BstYI	RGATCY	2 cut(s)	67, 614
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	352, 575, 637
Cac8I	GCNNGC	1 cut(s)	454
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	314
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	8 cut(s)	61, 115, 352, 389, 406, 422, 453, 494
CviJI	RGCY	7 cut(s)	97, 283, 292, 306, 325, 464, 643
CviKI_1	RGCY	7 cut(s)	97, 283, 292, 306, 325, 464, 643
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	7 cut(s)	69, 84, 111, 120, 146, 434, 616
DpnII	GATC	7 cut(s)	67, 82, 109, 118, 144, 432, 614
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
EciI	GGCGGA	1 cut(s)	269
Eco105I	TACGTA	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	283, 316, 456
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	8 cut(s)	64, 118, 355, 392, 409, 425, 456, 497
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	8 cut(s)	60, 114, 351, 388, 405, 421, 452, 493
FauNDI	CATATG	1 cut(s)	674
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	98, 450
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	98, 450
FspAI	RTGCGCAY	1 cut(s)	606
FspBI	CTAG	1 cut(s)	228
FspI	TGCGCA	1 cut(s)	606
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	2 cut(s)	98, 450
GsaI	CCCAGC	1 cut(s)	643
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	8 cut(s)	64, 118, 355, 392, 409, 425, 456, 497
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	22, 635
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	4 cut(s)	109, 123, 555, 681
Hpy188III	TCNNGA	4 cut(s)	228, 422, 719, 730
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	315, 727
HpyCH4III	ACNGT	4 cut(s)	347, 491, 579, 632
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	263, 278, 452, 484, 653, 688
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 289, 331, 356, 659
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	8 cut(s)	64, 118, 355, 392, 409, 425, 456, 497
HspAI	GCGC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	7 cut(s)	67, 82, 109, 118, 144, 432, 614
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	3 cut(s)	427, 662, 691
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	7 cut(s)	69, 84, 111, 120, 146, 434, 616
MboI	GATC	7 cut(s)	67, 82, 109, 118, 144, 432, 614
MboII	GAAGA	2 cut(s)	710, 734
MflI	RGATCY	2 cut(s)	67, 614
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	6 cut(s)	203, 211, 221, 235, 546, 625
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	2 cut(s)	454, 718
MseI	TTAA	2 cut(s)	381, 599
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	643, 662
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	4 cut(s)	285, 318, 327, 458
MvaI	CCWGG	3 cut(s)	285, 318, 458
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	5 cut(s)	260, 289, 331, 356, 659
NciI	CCSGG	1 cut(s)	327
NdeI	CATATG	1 cut(s)	674
NdeII	GATC	7 cut(s)	67, 82, 109, 118, 144, 432, 614
NlaIII	CATG	8 cut(s)	64, 118, 355, 392, 409, 425, 456, 497
NlaIV	GGNNCC	1 cut(s)	315
NsbI	TGCGCA	1 cut(s)	606
NspI	RCATGY	1 cut(s)	456
PaeI	GCATGC	1 cut(s)	456
PagI	TCATGA	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	22, 635
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	99, 451
Ppu21I	YACGTR	1 cut(s)	169
Psp6I	CCWGG	3 cut(s)	283, 316, 456
PspFI	CCCAGC	1 cut(s)	639
PspGI	CCWGG	3 cut(s)	283, 316, 456
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	67, 614
PvuII	CAGCTG	1 cut(s)	643
RseI	CAYNNNNRTG	1 cut(s)	393
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	381, 599
SatI	GCNGC	2 cut(s)	98, 450
Sau3AI	GATC	7 cut(s)	67, 82, 109, 118, 144, 432, 614
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	4 cut(s)	285, 318, 327, 458
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	4 cut(s)	92, 171, 645, 729
SfaNI	GCATC	3 cut(s)	427, 662, 691
SfcI	CTRYAG	1 cut(s)	610
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	393
SnaBI	TACGTA	1 cut(s)	169
SphI	GCATGC	1 cut(s)	456
Sse9I	AATT	6 cut(s)	203, 211, 221, 235, 546, 625
SsiI	CCGC	4 cut(s)	98, 254, 416, 660
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	4 cut(s)	283, 316, 325, 456
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	4 cut(s)	347, 491, 579, 632
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	150
TasI	AATT	6 cut(s)	203, 211, 221, 235, 546, 625
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	2 cut(s)	22, 635
Tru1I	TTAA	2 cut(s)	381, 599
Tru9I	TTAA	2 cut(s)	381, 599
TscAI	CASTG	3 cut(s)	352, 582, 637
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	4 cut(s)	77, 171, 377, 438
TspRI	CASTG	3 cut(s)	352, 582, 637
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	2 cut(s)	203, 235
XbaI	TCTAGA	1 cut(s)	227
XceI	RCATGY	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.