Rh3CG112600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001861
Physical Location & Seq
Reverse (-)
9008981 .. 9010885
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG112600.1

Sequence Viewer

Length: 369 bp
ATGAGACTCCACAGTCCCAAAAACACCTCAACACCTTCTACCACAAACCCACCAAAAATCATGGGATTTTGGAAGCCACTCTCACTCAATCTACTCTTCCCTTCTGTTCGTCATTCTCTCATCATTCTCAACTTGCAATTCAACCCCGCCCCATCTATTACTTCATTCCCACACCCCTATAGCAGCGCCGTTACTCTCCACCCAACCAAACACAGCTCCCACGCAGACTGGGTGATGGAAAACCTTAGAAAGGATCCCGAAATTGAGCCCTCAGCAATGCGAGGTTCTCAGTCATTAATTGACTCCTTCAAGTACCACAGTCGTCAACCTGAAACCACCACCATAGACGGTGTACCCGACGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.6

Weight (kDa)

9.16

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
AciI CCGC 1 cut(s) 147
AclWI GGATC 2 cut(s) 248, 261
AfaI GTAC 2 cut(s) 314, 354
AfiI CCNNNNNNNGG 2 cut(s) 250, 362
AgsI TTSAA 2 cut(s) 142, 310
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
AlwI GGATC 2 cut(s) 248, 261
ApeKI GCWGC 1 cut(s) 183
AseI ATTAAT 1 cut(s) 296
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 244
BamHI GGATCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 270
BbvCI CCTCAGC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 195
BccI CCATC 2 cut(s) 160, 229
BceAI ACGGC 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 255
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 271
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 362
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 250, 362
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 285, 302
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 195
BslI CCNNNNNNNGG 2 cut(s) 250, 362
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 284, 301
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 2 cut(s) 248, 261
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 233
BssMI GATC 1 cut(s) 253
Bst4CI ACNGT 4 cut(s) 14, 320, 350, 362
Bst6I CTCTTC 1 cut(s) 101
BstDEI CTNAG 3 cut(s) 245, 271, 288
BstENI CCTNNNNNAGG 1 cut(s) 248
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
CfoI GCGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 313, 353
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 76, 216, 268, 366
CviKI_1 RGCY 4 cut(s) 76, 216, 268, 366
CviQI GTAC 2 cut(s) 313, 353
DdeI CTNAG 3 cut(s) 245, 271, 288
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 180, 344
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 184
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 184
HaeII RGCGCY 1 cut(s) 189
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 326
HindII GTYRAC 1 cut(s) 326
HinfI GANTC 2 cut(s) 6, 302
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 326, 353
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 2 cut(s) 326, 353
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 3 cut(s) 45, 111, 316
HpyCH4III ACNGT 4 cut(s) 14, 320, 350, 362
HpyCH4V TGCA 1 cut(s) 136
HpyF3I CTNAG 3 cut(s) 245, 271, 288
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 2 cut(s) 214, 342
Lsp1109I GCAGC 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 3 cut(s) 137, 261, 297
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 3 cut(s) 37, 275, 280
MseI TTAA 1 cut(s) 296
NdeII GATC 1 cut(s) 253
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PshBI ATTAAT 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 314, 354
RsaNI GTAC 2 cut(s) 313, 353
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 1 cut(s) 253
SchI GAGTC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 270
SetI ASST 6 cut(s) 29, 37, 218, 246, 286, 331
SfcI CTRYAG 1 cut(s) 178
SgeI CNNG 9 cut(s) 73, 145, 158, 233, 241, 269, 293, 322, 341
Sse9I AATT 3 cut(s) 137, 261, 297
SsiI CCGC 1 cut(s) 147
TaaI ACNGT 4 cut(s) 14, 320, 350, 362
TasI AATT 3 cut(s) 137, 261, 297
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 153
VspI ATTAAT 1 cut(s) 296
XagI CCTNNNNNAGG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.