Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Reverse (-)

11153040 .. 11153333

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAAAATGAGATTGCTCAAAAGAGTTGCTGCATGCCATGAGGCTCGTGTCAGTTATTGGTTGCACAACGGTCATGTTACTAATAATAATGAGAAAATGTCAAAATCATTGGGCAACTCTTTCACAATTCGTGAGATTACTGTCAGGTATCATCCACTGTCTTTGAGACACTTCTTGTTAAGCGCACACTTTAGAACTCCTCTCAATTATAGTAACTTCCAGCTGGAAAGTGCATCAGATGCAGTGTATTACGTATATAATACTTTACAAGAATGTGAGGATGCTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

97

Amino Acids

11.32

Weight (kDa)

9.03

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	9 - 78	2.7e-20	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmsI	GCATC	3 cut(s)	229, 242, 271
BsaAI	YACGTR	1 cut(s)	253
BseGI	GGATG	2 cut(s)	151, 286
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	160
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	71, 142, 159
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	151, 286
BstHHI	GCGC	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	36
BstSNI	TACGTA	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	151, 286
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	155, 249
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	185
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	3 cut(s)	33, 38, 74
CviJI	RGCY	2 cut(s)	44, 223
CviKI_1	RGCY	2 cut(s)	44, 223
Eco105I	TACGTA	1 cut(s)	253
FaeI	CATG	3 cut(s)	36, 41, 77
FaiI	YATR	6 cut(s)	34, 39, 75, 210, 256, 258
FatI	CATG	3 cut(s)	32, 37, 73
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	30
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	36, 41, 77
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	131
HpyCH4III	ACNGT	3 cut(s)	71, 142, 159
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	32, 64, 233, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	36, 41, 77
HspAI	GCGC	1 cut(s)	183
LpnPI	CCDG	3 cut(s)	130, 209, 233
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	229, 242, 271
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	76, 212
MluCI	AATT	2 cut(s)	126, 205
MnlI	CCTC	3 cut(s)	34, 210, 271
MseI	TTAA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	239
NlaIII	CATG	3 cut(s)	36, 41, 77
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	30
SetI	ASST	3 cut(s)	149, 225, 255
SfaNI	GCATC	3 cut(s)	229, 242, 271
SnaBI	TACGTA	1 cut(s)	253
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	126, 205
TaaI	ACNGT	3 cut(s)	71, 142, 159
TaiI	ACGT	1 cut(s)	255
TasI	AATT	2 cut(s)	126, 205
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	2 cut(s)	162, 249
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	162, 249
XceI	RCATGY	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.