Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013603.1

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Forward (+)

80779 .. 84823

Gene Structure 4045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013603.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgggtgattcgtgcacggtggccatggctgagacagagggagagaatcagagttggaggtggtcatggatgagacgaagggagaaaatgggagttggaggcgattttgcattgtggaagtctgcaaagcctggagagccagaatggaaaaacccttggggaccaggaaggccggggtggcacattgaatgcagtgccatgagtgctcgttatcttacatacaagtttgatattcatgttggtggtattgacttgatttttccgcatcatgaaaacgagatcgctcaaagtggtgctgcatgccaggaggcttgtgtcagttattggttgcacaacggtgatgttactaaggacaatgagaaaatgtcaaaatcatttgggaacttttccacaattcgtcagtgtgaagatgctttatctccatttcaagaagaggtccagaaggaaggcacagcaccaaatggtagaacagttaaaattcctcaagctgcccaagttaagctacggaatgagtttaagactaaaatgtctgatgactttaacacagcacccatattgaccggtgctttgcaagatgacttgaggtctataaacagttttgtgcctgatcttaaggttttgcagcaattgaaaaagaaagcttcgaacagggcaagacttactgaagaggacgtgctgcgtgcgattgaagaaagaacaacagcaagacaaaaaaaaaatgcaaggggtgatcagatcagagaagaaatggagagaaagggggttggatgtggccaaggggagtatctggagaccttgtgtcccaaaagaacaagaacagaaaacaccgccaaacgaggaagaacagaaggcatcacccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

287

Amino Acids

32.5

Weight (kDa)

8.61

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	526
AciI	CCGC	2 cut(s)	263, 828
AcoI	YGGCCR	2 cut(s)	21, 772
AcsI	RAATTY	1 cut(s)	477
AcuI	CTGAAG	1 cut(s)	684
AflII	CTTAAG	1 cut(s)	611
AgeI	ACCGGT	1 cut(s)	560
AgsI	TTSAA	4 cut(s)	188, 428, 631, 689
AhdI	GACNNNNNGTC	2 cut(s)	583, 798
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	3 cut(s)	130, 163, 303
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	3 cut(s)	488, 502, 641
AluI	AGCT	3 cut(s)	488, 502, 641
Alw21I	GWGCWC	2 cut(s)	17, 208
Alw26I	GTCTC	3 cut(s)	26, 67, 785
Alw44I	GTGCAC	1 cut(s)	13
AoxI	GGCC	3 cut(s)	21, 170, 772
ApaLI	GTGCAC	1 cut(s)	13
ApeKI	GCWGC	4 cut(s)	296, 488, 622, 676
ApoI	RAATTY	1 cut(s)	477
ArsI	GACNNNNNNTTYG	2 cut(s)	550, 582
AsiGI	ACCGGT	1 cut(s)	560
AspS9I	GGNCC	2 cut(s)	161, 436
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	4 cut(s)	17, 350, 740, 847
AsuII	TTCGAA	1 cut(s)	644
AvaII	GGWCC	2 cut(s)	161, 436
BaeGI	GKGCMC	1 cut(s)	17
BalI	TGGCCA	2 cut(s)	23, 774
Bbv12I	GWGCWC	2 cut(s)	17, 208
BbvI	GCAGC	4 cut(s)	283, 475, 634, 663
BciT130I	CCWGG	3 cut(s)	132, 165, 305
BclI	TGATCA	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	3 cut(s)	26, 67, 785
BfrI	CTTAAG	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	178
BisI	GCNGC	4 cut(s)	297, 489, 623, 677
BlsI	GCNGC	4 cut(s)	298, 490, 624, 678
Bme1390I	CCNGG	4 cut(s)	132, 165, 174, 305
Bme18I	GGWCC	2 cut(s)	161, 436
BmeRI	GACNNNNNGTC	2 cut(s)	583, 798
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	161, 436
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	4 cut(s)	132, 165, 174, 305
BmsI	GCATC	2 cut(s)	274, 400
BpmI	CTGGAG	2 cut(s)	153, 809
Bpu14I	TTCGAA	1 cut(s)	644
BpuEI	CTTGAG	2 cut(s)	468, 601
BpuMI	CCSGG	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	4 cut(s)	24, 155, 173, 775
BsaWI	WCCGGW	1 cut(s)	560
BsaXI	ACNNNNNCTCC	2 cut(s)	782, 812
Bse118I	RCCGGY	1 cut(s)	560
BseBI	CCWGG	3 cut(s)	132, 165, 305
BseDI	CCNNGG	4 cut(s)	24, 155, 173, 775
BseGI	GGATG	2 cut(s)	75, 773
BseMII	CTCAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	4 cut(s)	283, 475, 634, 663
BshFI	GGCC	3 cut(s)	23, 172, 774
BshTI	ACCGGT	1 cut(s)	560
BsiHKAI	GWGCWC	2 cut(s)	17, 208
BsiSI	CCGG	2 cut(s)	173, 561
BslFI	GGGAC	2 cut(s)	174, 786
BsmAI	GTCTC	3 cut(s)	26, 67, 785
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	174, 786
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	3 cut(s)	23, 172, 774
Bso31I	GGTCTC	1 cut(s)	785
Bsp119I	TTCGAA	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	17, 208
Bsp143I	GATC	4 cut(s)	279, 607, 730, 735
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	2 cut(s)	263, 828
BspANI	GGCC	3 cut(s)	23, 172, 774
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	162
BspT104I	TTCGAA	1 cut(s)	644
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	785
BsrFI	RCCGGY	1 cut(s)	560
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	4 cut(s)	24, 155, 173, 775
BssMI	GATC	4 cut(s)	279, 607, 730, 735
BssT1I	CCWWGG	3 cut(s)	24, 155, 775
Bst2UI	CCWGG	3 cut(s)	132, 165, 305
Bst4CI	ACNGT	4 cut(s)	19, 338, 472, 596
Bst6I	CTCTTC	2 cut(s)	426, 660
BstAFI	CTTAAG	1 cut(s)	611
BstBI	TTCGAA	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	301, 681
BstDEI	CTNAG	2 cut(s)	30, 348
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	75, 773
BstKTI	GATC	4 cut(s)	282, 610, 733, 738
BstMAI	GTCTC	3 cut(s)	26, 67, 785
BstMBI	GATC	4 cut(s)	279, 607, 730, 735
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 178, 203
BstNI	CCWGG	3 cut(s)	132, 165, 305
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	4 cut(s)	130, 163, 172, 303
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	283, 475, 634, 663
BsuRI	GGCC	3 cut(s)	23, 172, 774
BtgI	CCRYGG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	75, 773
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	199, 407
Cac8I	GCNNGC	2 cut(s)	301, 681
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	2 cut(s)	161, 436
CspAI	ACCGGT	1 cut(s)	560
CviAII	CATG	6 cut(s)	25, 66, 199, 236, 269, 300
DdeI	CTNAG	2 cut(s)	30, 348
DpnI	GATC	4 cut(s)	281, 609, 732, 737
DpnII	GATC	4 cut(s)	279, 607, 730, 735
DrdI	GACNNNNNNGTC	1 cut(s)	526
DriI	GACNNNNNGTC	2 cut(s)	583, 798
DseDI	GACNNNNNNGTC	1 cut(s)	526
EaeI	YGGCCR	2 cut(s)	21, 772
Eam1104I	CTCTTC	2 cut(s)	426, 660
Eam1105I	GACNNNNNGTC	2 cut(s)	583, 798
EarI	CTCTTC	2 cut(s)	426, 660
Eco130I	CCWWGG	3 cut(s)	24, 155, 775
Eco31I	GGTCTC	1 cut(s)	785
Eco47I	GGWCC	2 cut(s)	161, 436
Eco57I	CTGAAG	1 cut(s)	684
EcoRII	CCWGG	3 cut(s)	130, 163, 303
EcoT14I	CCWWGG	3 cut(s)	24, 155, 775
ErhI	CCWWGG	3 cut(s)	24, 155, 775
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	6 cut(s)	28, 69, 202, 239, 272, 303
FaiI	YATR	9 cut(s)	26, 67, 200, 220, 237, 270, 301, 554, 590
FaqI	GGGAC	2 cut(s)	174, 786
FatI	CATG	6 cut(s)	24, 65, 198, 235, 268, 299
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	4 cut(s)	297, 489, 623, 677
FokI	GGATG	2 cut(s)	82, 780
Fsp4HI	GCNGC	4 cut(s)	297, 489, 623, 677
GluI	GCNGC	4 cut(s)	297, 489, 623, 677
GsuI	CTGGAG	2 cut(s)	153, 809
HaeIII	GGCC	3 cut(s)	23, 172, 774
HapII	CCGG	2 cut(s)	173, 561
Hin1II	CATG	6 cut(s)	28, 69, 202, 239, 272, 303
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	2 cut(s)	8, 46
HpaII	CCGG	2 cut(s)	173, 561
HphI	GGTGA	4 cut(s)	17, 350, 740, 847
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	4 cut(s)	51, 532, 735, 740
Hpy188III	TCNNGA	4 cut(s)	269, 428, 439, 788
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	5 cut(s)	72, 162, 436, 440, 842
HpyCH4III	ACNGT	4 cut(s)	19, 338, 472, 596
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	9 cut(s)	15, 110, 125, 192, 299, 331, 571, 622, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 178, 203
HpyF3I	CTNAG	2 cut(s)	30, 348
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	6 cut(s)	28, 69, 202, 239, 272, 303
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	4 cut(s)	279, 607, 730, 735
Lsp1109I	GCAGC	4 cut(s)	283, 475, 634, 663
LweI	GCATC	2 cut(s)	274, 400
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	4 cut(s)	281, 609, 732, 737
MboI	GATC	4 cut(s)	279, 607, 730, 735
MboII	GAAGA	6 cut(s)	419, 443, 677, 701, 755, 852
MfeI	CAATTG	1 cut(s)	626
MhlI	GDGCHC	2 cut(s)	17, 208
MlsI	TGGCCA	2 cut(s)	23, 774
MluCI	AATT	3 cut(s)	393, 477, 626
MluNI	TGGCCA	2 cut(s)	23, 774
MmeI	TCCRAC	3 cut(s)	35, 76, 745
MnlI	CCTC	9 cut(s)	31, 51, 92, 301, 427, 492, 576, 661, 830
Mox20I	TGGCCA	2 cut(s)	23, 774
MscI	TGGCCA	2 cut(s)	23, 774
MseI	TTAA	5 cut(s)	474, 498, 516, 540, 612
MslI	CAYNNNNRTG	2 cut(s)	240, 336
Msp20I	TGGCCA	2 cut(s)	23, 774
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	2 cut(s)	173, 561
MspR9I	CCNGG	4 cut(s)	132, 165, 174, 305
MunI	CAATTG	1 cut(s)	626
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	3 cut(s)	132, 165, 305
MwoI	GCNNNNNNNGC	3 cut(s)	136, 178, 203
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	279, 607, 730, 735
NlaIII	CATG	6 cut(s)	28, 69, 202, 239, 272, 303
NlaIV	GGNNCC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	303
NspV	TTCGAA	1 cut(s)	644
OliI	CACNNNNGTG	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	303
PagI	TCATGA	1 cut(s)	268
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	8, 46
PinAI	ACCGGT	1 cut(s)	560
PkrI	GCNGC	4 cut(s)	298, 490, 624, 678
Psp6I	CCWGG	3 cut(s)	130, 163, 303
PspGI	CCWGG	3 cut(s)	130, 163, 303
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	161, 436
RseI	CAYNNNNRTG	2 cut(s)	240, 336
SaqAI	TTAA	5 cut(s)	474, 498, 516, 540, 612
SatI	GCNGC	4 cut(s)	297, 489, 623, 677
Sau3AI	GATC	4 cut(s)	279, 607, 730, 735
Sau96I	GGNCC	2 cut(s)	161, 436
ScrFI	CCNGG	4 cut(s)	132, 165, 174, 305
SduI	GDGCHC	2 cut(s)	17, 208
SetI	ASST	9 cut(s)	62, 438, 490, 504, 587, 618, 643, 675, 797
SfaNI	GCATC	2 cut(s)	274, 400
SfuI	TTCGAA	1 cut(s)	644
SinI	GGWCC	2 cut(s)	161, 436
SmiMI	CAYNNNNRTG	2 cut(s)	240, 336
SmlI	CTYRAG	3 cut(s)	483, 580, 611
SmoI	CTYRAG	3 cut(s)	483, 580, 611
SphI	GCATGC	1 cut(s)	303
Sse9I	AATT	3 cut(s)	393, 477, 626
SsiI	CCGC	2 cut(s)	263, 828
StyD4I	CCNGG	4 cut(s)	130, 163, 172, 303
StyI	CCWWGG	3 cut(s)	24, 155, 775
TaaI	ACNGT	4 cut(s)	19, 338, 472, 596
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	1 cut(s)	644
TasI	AATT	3 cut(s)	393, 477, 626
TfiI	GAWTC	2 cut(s)	8, 46
Tru1I	TTAA	5 cut(s)	474, 498, 516, 540, 612
Tru9I	TTAA	5 cut(s)	474, 498, 516, 540, 612
TscAI	CASTG	2 cut(s)	199, 407
TseI	GCWGC	4 cut(s)	296, 488, 622, 676
TspDTI	ATGAA	2 cut(s)	224, 285
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	2 cut(s)	199, 407
Vha464I	CTTAAG	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	161, 436
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.