Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Reverse (-)

1570556 .. 1572000

Gene Structure 1445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG025100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAATGCTCGTTATCTTACATACAAGTTTGATATTCATGGTGGTGGTATTGACTTGATTTTTCCGCATCATGAAAACGAGATCGCTCAAAGTGGTGCTGCATGCCAGGAGGCTTGTGTCAGTTATTGGTTGCACAACGATCATGTTACTAAGGATAATGAGAAAATGTCAAAATCATTTGGGAACTTTTCCACAATTCGTCAGACTTTGCAAGAGTGTGAAGATGCTTTATCTCCATTTCAAGAAGAGGTCCAGAAGGAAGGCACAGAACCAAACAGTTTTGTGCCTGATCTTAAGAAGAAGCAGCAGAAGCAAAAACAATCATCCGTAATCCAGGCCCTAGTTGAAAGTTGGAACAACGAGAGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

123

Amino Acids

14.09

Weight (kDa)

5.48

Isoelectric Point (pI)

72.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	1 - 74	2.5e-29	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	65
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	242, 347
AjnI	CCWGG	2 cut(s)	105, 333
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	98, 304
AspS9I	GGNCC	2 cut(s)	250, 337
AvaII	GGWCC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	85, 316
BciT130I	CCWGG	2 cut(s)	107, 335
BfaI	CTAG	1 cut(s)	341
BfrI	CTTAAG	1 cut(s)	293
BisI	GCNGC	2 cut(s)	99, 305
BlsI	GCNGC	2 cut(s)	100, 306
Bme1390I	CCNGG	2 cut(s)	107, 335
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	250, 337
BmrFI	CCNGG	2 cut(s)	107, 335
BmsI	GCATC	2 cut(s)	76, 214
BseBI	CCWGG	2 cut(s)	107, 335
BseGI	GGATG	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	85, 316
BshFI	GGCC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	338
Bsp143I	GATC	3 cut(s)	81, 139, 289
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	338
BspHI	TCATGA	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	293
BssMI	GATC	3 cut(s)	81, 139, 289
Bst2UI	CCWGG	2 cut(s)	107, 335
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	240
BstAFI	CTTAAG	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	323
BstKTI	GATC	3 cut(s)	84, 142, 292
BstMBI	GATC	3 cut(s)	81, 139, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	2 cut(s)	107, 335
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	105, 333
BstV1I	GCAGC	2 cut(s)	85, 316
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	323
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	250, 337
CviAII	CATG	4 cut(s)	38, 71, 102, 143
CviJI	RGCY	2 cut(s)	113, 338
CviKI_1	RGCY	2 cut(s)	113, 338
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	83, 141, 291
DpnII	GATC	3 cut(s)	81, 139, 289
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	105, 333
FaeI	CATG	4 cut(s)	41, 74, 105, 146
FaiI	YATR	5 cut(s)	22, 39, 72, 103, 144
FatI	CATG	4 cut(s)	37, 70, 101, 142
Fnu4HI	GCNGC	2 cut(s)	99, 305
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	99, 305
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	2 cut(s)	99, 305
HaeIII	GGCC	1 cut(s)	338
Hin1II	CATG	4 cut(s)	41, 74, 105, 146
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	3 cut(s)	71, 242, 253
HpyAV	CCTTC	2 cut(s)	250, 254
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	101, 133, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	41, 74, 105, 146
Kzo9I	GATC	3 cut(s)	81, 139, 289
LpnPI	CCDG	6 cut(s)	92, 119, 266, 300, 320, 347
Lsp1109I	GCAGC	2 cut(s)	85, 316
LweI	GCATC	2 cut(s)	76, 214
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	83, 141, 291
MboI	GATC	3 cut(s)	81, 139, 289
MboII	GAAGA	3 cut(s)	233, 257, 310
MluCI	AATT	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	2 cut(s)	103, 241
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	42
MspCI	CTTAAG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	107, 335
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	107, 335
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	3 cut(s)	81, 139, 289
NlaIII	CATG	4 cut(s)	41, 74, 105, 146
NspI	RCATGY	1 cut(s)	105
PaeI	GCATGC	1 cut(s)	105
PagI	TCATGA	1 cut(s)	70
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	100, 306
Psp6I	CCWGG	2 cut(s)	105, 333
PspGI	CCWGG	2 cut(s)	105, 333
PspPI	GGNCC	2 cut(s)	250, 337
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	99, 305
Sau3AI	GATC	3 cut(s)	81, 139, 289
Sau96I	GGNCC	2 cut(s)	250, 337
ScrFI	CCNGG	2 cut(s)	107, 335
SetI	ASST	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	76, 214
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	105, 333
TaaI	ACNGT	1 cut(s)	278
TasI	AATT	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	2 cut(s)	98, 304
TspDTI	ATGAA	3 cut(s)	17, 26, 87
TspGWI	ACGGA	1 cut(s)	316
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	250
XceI	RCATGY	1 cut(s)	105
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.