Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Reverse (-)

10765724 .. 10766046

Gene Structure 323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG061300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGATCATCGACAATGACTATGCCTACGTAGTTGATGGGGATGTATTCTCTGCTGTTGCGGAATTCCCAAATTATGGACAATTATCTAGACAGAAGTTGGAACATATTAGGGCGGGTGAACGAGTTTCTGTTGATTCAAGAAAGCGCAATCCTGCAGATTTTGCATTGTGGAAGTCCTGCAAAGCCTGGAGAGCCAAAATGGGACAGCGACTGGGGACCAGGAAGGCCGGGGTGGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

80

Amino Acids

9.05

Weight (kDa)

9.72

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	2 - 66	1e-14	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	2 cut(s)	59, 113
AcsI	RAATTY	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	138
AjnI	CCWGG	2 cut(s)	185, 218
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	216
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	187, 220
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	229
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	153
BglI	GCCNNNNNGGC	1 cut(s)	233
Bme1390I	CCNGG	3 cut(s)	187, 220, 229
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	3 cut(s)	187, 220, 229
BmrI	ACTGGG	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	187, 220
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	216, 229
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	216, 229
BsnI	GGCC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	59, 113
BspANI	GGCC	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	2 cut(s)	187, 220
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 191, 233
BstNI	CCWGG	2 cut(s)	187, 220
BstSCI	CCNGG	3 cut(s)	185, 218, 227
BstSFI	CTRYAG	1 cut(s)	153
BstSNI	TACGTA	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	46
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	216
CviJI	RGCY	3 cut(s)	185, 194, 227
CviKI_1	RGCY	3 cut(s)	185, 194, 227
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco105I	TACGTA	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	185, 218
FaiI	YATR	3 cut(s)	21, 75, 105
FaqI	GGGAC	2 cut(s)	216, 229
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	53
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188III	TCNNGA	2 cut(s)	87, 138
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	155, 164, 180
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 191, 233
HpySE526I	ACGT	1 cut(s)	27
HspAI	GCGC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	7 cut(s)	165, 172, 190, 197, 199, 205, 232
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	27
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MluCI	AATT	3 cut(s)	62, 70, 80
MmeI	TCCRAC	1 cut(s)	78
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	3 cut(s)	187, 220, 229
MvaI	CCWGG	2 cut(s)	187, 220
MwoI	GCNNNNNNNGC	3 cut(s)	161, 191, 233
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	185, 218
PspGI	CCWGG	2 cut(s)	185, 218
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	216
ScrFI	CCNGG	3 cut(s)	187, 220, 229
SetI	ASST	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	216
SnaBI	TACGTA	1 cut(s)	28
Sse9I	AATT	3 cut(s)	62, 70, 80
SsiI	CCGC	2 cut(s)	59, 113
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	185, 218, 227
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	9
TasI	AATT	3 cut(s)	62, 70, 80
TfiI	GAWTC	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	62
XbaI	TCTAGA	1 cut(s)	86
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.