Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Reverse (-)

18273961 .. 18274597

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1098100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTTTTTAGCATAATCCAGTGCCTTCTTCCCACCCATCAGCCATATGTTTCTGAGCACATAGAACATATCAAGGATTTGAAAACACAGATTATTAACAACGAATATGCATATCTGGTTGGCGGGGATGTAGTCTTTACTGTTGATAAATTTCCAAATTATGGCCAGTTATTTGGACAAAAATTGGAACACAATCGGGCTGGTGAACGAGTTGCTGTTGATTCAAGGAAGCGTAATCCAGCAGACTTTGCATTGTGGAAGTCTGCAAAGCCTGGTGAACCAAGTTGGGAAAGCCCTTGGGGACCTGGTAAACCTGGATGGCACATTGAATGTAGTGCAATGAGTGCACATTATATGACATTCAAGTTTAATATTCATGGCGGCTGTATTGACTTGATTTTTCCACATCATGAGAATGAGATTGCCCAAAGACTACACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

148

Amino Acids

16.89

Weight (kDa)

6.54

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	6 - 144	1.7e-53	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	161
AciI	CCGC	2 cut(s)	123, 381
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	82, 225, 329, 364
AjnI	CCWGG	3 cut(s)	271, 304, 313
Alw21I	GWGCWC	2 cut(s)	60, 349
Alw44I	GTGCAC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	345
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	215, 287
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	60, 349
BccI	CCATC	2 cut(s)	45, 312
BciT130I	CCWGG	3 cut(s)	273, 306, 315
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
Bme1390I	CCNGG	3 cut(s)	273, 306, 315
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	3 cut(s)	273, 306, 315
BsaJI	CCNNGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	3 cut(s)	19, 166, 439
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	3 cut(s)	273, 306, 315
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	2 cut(s)	133, 323
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	19, 166, 439
BseSI	GKGCMC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	60, 349
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	60, 349
BspACI	CCGC	2 cut(s)	123, 381
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	3 cut(s)	19, 166, 439
BssECI	CCNNGG	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	3 cut(s)	273, 306, 315
Bst4CI	ACNGT	1 cut(s)	142
BstAPI	GCANNNNNTGC	2 cut(s)	248, 344
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	133, 323
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 344
BstNI	CCWGG	3 cut(s)	273, 306, 315
BstSCI	CCNGG	3 cut(s)	271, 304, 313
BstSLI	GKGCMC	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	133, 323
BtsIMutI	CAGTG	1 cut(s)	26
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	302
CsiI	ACCWGGT	1 cut(s)	304
CviAII	CATG	2 cut(s)	377, 410
CviJI	RGCY	6 cut(s)	43, 165, 200, 271, 294, 384
CviKI_1	RGCY	6 cut(s)	43, 165, 200, 271, 294, 384
DdeI	CTNAG	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	3 cut(s)	271, 304, 313
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	380, 413
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	2 cut(s)	376, 409
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	2 cut(s)	140, 330
Fsp4HI	GCNGC	1 cut(s)	382
GluI	GCNGC	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	380, 413
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	215, 287
Hpy166II	GTNNAC	4 cut(s)	206, 278, 311, 347
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	4 cut(s)	206, 278, 311, 347
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	5 cut(s)	110, 251, 266, 338, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 344
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	380, 413
MabI	ACCWGGT	1 cut(s)	304
MboII	GAAGA	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	60, 349
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	3 cut(s)	149, 157, 182
MluNI	TGGCCA	1 cut(s)	165
Mox20I	TGGCCA	1 cut(s)	165
Mph1103I	ATGCAT	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	2 cut(s)	96, 369
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	165
MspR9I	CCNGG	3 cut(s)	273, 306, 315
MvaI	CCWGG	3 cut(s)	273, 306, 315
MwoI	GCNNNNNNNGC	2 cut(s)	248, 344
NdeI	CATATG	1 cut(s)	46
NlaIII	CATG	2 cut(s)	380, 413
NlaIV	GGNNCC	1 cut(s)	303
NsiI	ATGCAT	1 cut(s)	112
PagI	TCATGA	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	271, 304, 313
PspGI	CCWGG	3 cut(s)	271, 304, 313
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	96, 369
SatI	GCNGC	1 cut(s)	382
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	273, 306, 315
SduI	GDGCHC	2 cut(s)	60, 349
SetI	ASST	2 cut(s)	307, 316
SexAI	ACCWGGT	1 cut(s)	304
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	3 cut(s)	149, 157, 182
SsiI	CCGC	2 cut(s)	123, 381
SspI	AATATT	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	271, 304, 313
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	142
TasI	AATT	3 cut(s)	149, 157, 182
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	96, 369
Tru9I	TTAA	2 cut(s)	96, 369
TscAI	CASTG	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.