Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Forward (+)

12664589 .. 12664819

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCCGAGTTCAGGCTCTTCAAGCCCCTTGTTCCCGGCCAGGTCAGCATTTACGTCTGTGGCGTCACCGCCTACGCTCTCAGCCACATCGGCCACGCCCGCGCCGCGGTTAATTTTGACGTCCTCTACCGATACTTGGAGGAGCTGGGTTATAAGGTCACATATGTGAGGAACTTCACTGATGTTGATGACAAGATAATTCGTCAAGGAAGATCCAATAAATATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

77

Amino Acids

8.78

Weight (kDa)

9.37

Isoelectric Point (pI)

22.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	7 - 74	2.8e-27	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AatII	GACGTC	1 cut(s)	123
AccII	CGCG	2 cut(s)	102, 107
AciI	CCGC	4 cut(s)	69, 100, 105, 107
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	3 cut(s)	3, 37, 91
AcyI	GRCGYC	2 cut(s)	63, 120
AfiI	CCNNNNNNNGG	3 cut(s)	12, 106, 136
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	39
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	3 cut(s)	3, 37, 91
AspLEI	GCGC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	2 cut(s)	36, 41
BmrFI	CCNGG	2 cut(s)	36, 41
BpuMI	CCSGG	1 cut(s)	36
BsaHI	GRCGYC	2 cut(s)	63, 120
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 106, 136
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	12, 106, 136
BseMII	CTCAG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	2 cut(s)	102, 107
BshFI	GGCC	3 cut(s)	5, 39, 93
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	3 cut(s)	12, 106, 136
BsnI	GGCC	3 cut(s)	5, 39, 93
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	4 cut(s)	69, 100, 105, 107
BspANI	GGCC	3 cut(s)	5, 39, 93
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	102, 107
BspPI	GGATC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	212
BssNI	GRCGYC	2 cut(s)	63, 120
Bst2UI	CCWGG	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	2 cut(s)	63, 120
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	2 cut(s)	102, 107
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 45, 90, 99, 104
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	34, 39
BstUI	CGCG	2 cut(s)	102, 107
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	3 cut(s)	5, 39, 93
BtgI	CCRYGG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	104
Cfr42I	CCGCGG	1 cut(s)	108
CseI	GACGC	1 cut(s)	52
CviJI	RGCY	7 cut(s)	5, 16, 25, 39, 84, 93, 145
CviKI_1	RGCY	7 cut(s)	5, 16, 25, 39, 84, 93, 145
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
EaeI	YGGCCR	3 cut(s)	3, 37, 91
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	39
FaiI	YATR	4 cut(s)	153, 163, 165, 225
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	5, 39, 93
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	2 cut(s)	63, 120
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	54, 120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 45, 90, 99, 104
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	54, 120
Hsp92I	GRCGYC	2 cut(s)	63, 120
HspAI	GCGC	1 cut(s)	102
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	212
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	4 cut(s)	26, 49, 53, 131
MaeII	ACGT	2 cut(s)	54, 120
MaeIII	GTNAC	2 cut(s)	64, 157
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	2 cut(s)	10, 222
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	2 cut(s)	112, 198
MnlI	CCTC	3 cut(s)	133, 134, 162
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	36, 41
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	2 cut(s)	102, 107
MwoI	GCNNNNNNNGC	5 cut(s)	22, 45, 90, 99, 104
NciI	CCSGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	1 cut(s)	212
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	64, 157
OliI	CACNNNNGTG	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	106
PsiI	TTATAA	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	164
SacII	CCGCGG	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	36, 41
SetI	ASST	5 cut(s)	45, 57, 123, 147, 159
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	112, 198
SsiI	CCGC	4 cut(s)	69, 100, 105, 107
StyD4I	CCNGG	2 cut(s)	34, 39
TaiI	ACGT	2 cut(s)	57, 123
TasI	AATT	2 cut(s)	112, 198
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	2 cut(s)	64, 157
Tsp45I	GTSAC	2 cut(s)	64, 157
TspRI	CASTG	1 cut(s)	184
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.