Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Forward (+)

5384593 .. 5385122

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1076600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTTATATATTATGTCTTTGTGATGATTATTAACAACGAATATGCATATGTGGTTGGCGGGGATGTAGTCTTTGCTGTTGATGAATTTCCAAATTATGGCCAGTTATCTGGACAAAAATTGGAACACAATCGGGCTGGTGAACGAGTTGTTGTTGATTCAAGGAAGCGTAATCCAGCAGACTTTGCATTGTGGAAGTCTGCAAAGCCTGGTGAGCCAAGTTGGGAAAGCCCTTGGGGACCTGGTAGACCTGGATGGCACATTGAATGTAGTGCAATGAGTGCACATTATATGACATTCAAGTTTGATATTCGTGGCGGTGGTATTGACTTGATTTTTCCACATCATGAGAATGAGGTTGCCCAGAGACTACACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

127

Amino Acids

14.38

Weight (kDa)

6.04

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	9 - 123	9.6e-50	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	247
AciI	CCGC	2 cut(s)	60, 318
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	162, 266, 301
AjnI	CCWGG	3 cut(s)	208, 241, 250
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	361
Alw44I	GTGCAC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	100
ApaLI	GTGCAC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	152, 224
AvaII	GGWCC	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	286
BccI	CCATC	1 cut(s)	249
BciT130I	CCWGG	3 cut(s)	210, 243, 252
BcoDI	GTCTC	1 cut(s)	361
Bme1390I	CCNGG	3 cut(s)	210, 243, 252
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	3 cut(s)	210, 243, 252
BsaJI	CCNNGG	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	103, 376
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	3 cut(s)	210, 243, 252
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	2 cut(s)	70, 260
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	103, 376
BseSI	GKGCMC	1 cut(s)	286
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	286
BspACI	CCGC	2 cut(s)	60, 318
BspANI	GGCC	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	103, 376
BssECI	CCNNGG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	233
Bst2UI	CCWGG	3 cut(s)	210, 243, 252
BstAPI	GCANNNNNTGC	2 cut(s)	185, 281
BstF5I	GGATG	2 cut(s)	70, 260
BstMAI	GTCTC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 214, 281
BstNI	CCWGG	3 cut(s)	210, 243, 252
BstSCI	CCNGG	3 cut(s)	208, 241, 250
BstSLI	GKGCMC	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	70, 260
CciI	TCATGA	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	239
CsiI	ACCWGGT	1 cut(s)	241
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	5 cut(s)	102, 137, 208, 217, 231
CviKI_1	RGCY	5 cut(s)	102, 137, 208, 217, 231
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	208, 241, 250
EcoT14I	CCWWGG	1 cut(s)	233
EcoT22I	ATGCAT	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	1 cut(s)	350
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	1 cut(s)	346
FauI	CCCGC	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	247
FokI	GGATG	2 cut(s)	77, 267
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	350
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	2 cut(s)	152, 224
Hpy166II	GTNNAC	3 cut(s)	143, 248, 284
Hpy188III	TCNNGA	2 cut(s)	111, 347
Hpy8I	GTNNAC	3 cut(s)	143, 248, 284
HpyCH4V	TGCA	5 cut(s)	47, 188, 203, 275, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 214, 281
Hsp92II	CATG	1 cut(s)	350
MabI	ACCWGGT	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	86, 94, 119
MluNI	TGGCCA	1 cut(s)	102
MnlI	CCTC	1 cut(s)	349
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	210, 243, 252
MvaI	CCWGG	3 cut(s)	210, 243, 252
MwoI	GCNNNNNNNGC	3 cut(s)	185, 214, 281
NdeI	CATATG	1 cut(s)	49
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	49
PagI	TCATGA	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	3 cut(s)	208, 241, 250
PspGI	CCWGG	3 cut(s)	208, 241, 250
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	239
PspPPI	RGGWCCY	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	3 cut(s)	210, 243, 252
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	3 cut(s)	244, 253, 360
SexAI	ACCWGGT	1 cut(s)	241
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	86, 94, 119
SsiI	CCGC	2 cut(s)	60, 318
StyD4I	CCNGG	3 cut(s)	208, 241, 250
StyI	CCWWGG	1 cut(s)	233
TasI	AATT	3 cut(s)	86, 94, 119
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	99
Van91I	CCANNNNNTGG	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.