Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Reverse (-)

21567021 .. 21568787

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1183300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 138 bp

ATGTACGTTTGTGGAATTGCCGCATGTGATCTCAGCCATCTTGACCATGCTCGTGCCGCCATCAATTCCGATGTCGTCTTCAGGCATATTTGCGTCTTTAGCGGCGTTGATGTTGAATTGTGTAAAAAAGGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

46

Amino Acids

4.9

Weight (kDa)

6.37

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	1 - 41	1e-06	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	21, 57, 102
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	116
BauI	CACGAG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	70
BccI	CCATC	2 cut(s)	45, 68
BisI	GCNGC	3 cut(s)	21, 57, 103
BlsI	GCNGC	3 cut(s)	22, 58, 104
BpiI	GAAGAC	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	21, 57, 102
BspCNI	CTCAG	1 cut(s)	45
BssMI	GATC	1 cut(s)	28
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	32
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 99
BstNSI	RCATGY	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	70
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	24, 47
CviJI	RGCY	1 cut(s)	36
CviKI_1	RGCY	1 cut(s)	36
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	64
FaeI	CATG	2 cut(s)	27, 50
FaiI	YATR	3 cut(s)	25, 48, 87
FatI	CATG	2 cut(s)	23, 46
Fnu4HI	GCNGC	3 cut(s)	21, 57, 103
Fsp4HI	GCNGC	3 cut(s)	21, 57, 103
FspEI	CC	9 cut(s)	34, 50, 59, 67, 70, 73, 82, 87, 114
GluI	GCNGC	3 cut(s)	21, 57, 103
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	2 cut(s)	27, 50
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 99
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	27, 50
Kzo9I	GATC	1 cut(s)	28
LpnPI	CCDG	1 cut(s)	67
MaeII	ACGT	1 cut(s)	6
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	70
MluCI	AATT	3 cut(s)	15, 64, 116
MslI	CAYNNNNRTG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	56, 99
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	27, 50
NspI	RCATGY	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	22, 58, 104
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	3 cut(s)	21, 57, 103
Sau3AI	GATC	1 cut(s)	28
SetI	ASST	1 cut(s)	9
SgeI	CNNG	6 cut(s)	36, 53, 59, 63, 65, 94
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	3 cut(s)	15, 64, 116
SsiI	CCGC	3 cut(s)	21, 57, 102
TaiI	ACGT	1 cut(s)	9
TasI	AATT	3 cut(s)	15, 64, 116
TauI	GCSGC	3 cut(s)	23, 59, 105
XceI	RCATGY	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.