Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Reverse (-)

61543704 .. 61548099

Gene Structure 4396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG358200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCCGAATTTAGGGTTTACAACTCGATGACGCAGCAGAAGGAGGTCTTCAAGCCCAACGTTCCCGGCGAGGTCAGTATGTACGTCTGCGGCGTCACCGCCTACGATTTCAGCCACATCGGCCACGCCCGCGCCGCCGTCAACTTTGATGTCCTCTTCAGATACTTAACGGAGCTGGGTTATAAGGTCACATACGTGAGGAACTTTACCGATGTTGATGACAAGATAATTCATAAAGCAAATGAGATTGGGGAAGATCCATTAAGTTTAAGTAATCGTTTTTGTCAAGAATATCTCAATGACATGGGAGATCTCCAATGCCTCACTCCAACCTATCAGCCGCGTGTTTCTGATCACATGGAACAGATAATAGATATGATAAAACAGATCATCAACAATGACTATGCCTACGTAGTTGATGGAGATGTATTCTTTGCTGTTGAGAAATTCCCAAATTATGGGCAGTTATCTGGACAAAAGTTGGAACATATTAGGGCGGGTGAACGAGTTTCTGTTGATTCAAGAAAACGCAATCCTGCAGACTTTGCTTTGTGGAAGTCTGCAAAGCCTGGAGAGCCAAGTTGGGACAGCCCTTGGGGACTAGGAAGGCCGGGGTGGCACATAGAATGCAGTGCCATGAGTGCTCATTATCTTACGTTCAAGTTTGATATTCACGGTGGTGGTATTGACTTGATTTTTCCACATCATGAAAACGAGATTGCTCAAAGTGGTGCTGCATACCAGGAGGGCTGTGTCAGTTATTGGTTGCACAACGGTCATGTTACTAATAATAATGAGAAAATGTCAAAATCATTGGGAAACTTTTTTACAATTCGTGAGGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

282

Amino Acids

32.18

Weight (kDa)

5.61

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	17 - 281	1.9e-119	tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g	PF09334	38 - 147	4.8e-06	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccII	CGCG	2 cut(s)	132, 343
AciI	CCGC	6 cut(s)	90, 99, 130, 135, 341, 497
AclI	AACGTT	1 cut(s)	60
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	2 cut(s)	3, 121
AcsI	RAATTY	2 cut(s)	8, 446
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	12, 458
AgsI	TTSAA	3 cut(s)	52, 522, 661
AjnI	CCWGG	2 cut(s)	568, 741
AleI	CACNNNNGTG	2 cut(s)	194, 678
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw21I	GWGCWC	1 cut(s)	646
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	3 cut(s)	3, 121, 608
ApeKI	GCWGC	2 cut(s)	34, 734
ApoI	RAATTY	2 cut(s)	8, 446
AspLEI	GCGC	1 cut(s)	134
AsuC2I	CCSGG	2 cut(s)	66, 612
AsuHPI	GGTGA	2 cut(s)	88, 512
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	2 cut(s)	46, 721
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	570, 743
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	66, 612
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	537
BglI	GCCNNNNNGGC	2 cut(s)	120, 616
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	5 cut(s)	35, 91, 135, 341, 735
BlsI	GCNGC	5 cut(s)	36, 92, 136, 342, 736
Bme1390I	CCNGG	4 cut(s)	66, 570, 612, 743
BmrFI	CCNGG	4 cut(s)	66, 570, 612, 743
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	591
BpuMI	CCSGG	2 cut(s)	66, 612
BsaAI	YACGTR	2 cut(s)	196, 412
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	593, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 458
BseBI	CCWGG	2 cut(s)	570, 743
BseDI	CCNNGG	2 cut(s)	593, 611
BseLI	CCNNNNNNNGG	2 cut(s)	12, 458
BseXI	GCAGC	2 cut(s)	46, 721
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	2 cut(s)	132, 343
BshFI	GGCC	3 cut(s)	5, 123, 610
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	2 cut(s)	66, 611
BslFI	GGGAC	2 cut(s)	599, 612
BslI	CCNNNNNNNGG	2 cut(s)	12, 458
BsmFI	GGGAC	2 cut(s)	599, 612
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	3 cut(s)	5, 123, 610
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	4 cut(s)	256, 310, 352, 387
BspACI	CCGC	6 cut(s)	90, 99, 130, 135, 341, 497
BspANI	GGCC	3 cut(s)	5, 123, 610
BspFNI	CGCG	2 cut(s)	132, 343
BspHI	TCATGA	1 cut(s)	706
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	593, 611
BssMI	GATC	4 cut(s)	256, 310, 352, 387
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	2 cut(s)	570, 743
Bst4CI	ACNGT	2 cut(s)	677, 776
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	2 cut(s)	196, 412
BstC8I	GCNNGC	1 cut(s)	130
BstFNI	CGCG	2 cut(s)	132, 343
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	4 cut(s)	259, 313, 355, 390
BstMBI	GATC	4 cut(s)	256, 310, 352, 387
BstMWI	GCNNNNNNNGC	7 cut(s)	120, 129, 134, 545, 574, 616, 641
BstNI	CCWGG	2 cut(s)	570, 743
BstSCI	CCNGG	4 cut(s)	64, 568, 610, 741
BstSFI	CTRYAG	1 cut(s)	537
BstSNI	TACGTA	1 cut(s)	412
BstUI	CGCG	2 cut(s)	132, 343
BstV1I	GCAGC	2 cut(s)	46, 721
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	256, 310
BstYI	RGATCY	2 cut(s)	256, 310
BsuRI	GGCC	3 cut(s)	5, 123, 610
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	130
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	134
CseI	GACGC	2 cut(s)	40, 82
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	5 cut(s)	304, 358, 637, 707, 779
CviQI	GTAC	1 cut(s)	82
DpnI	GATC	4 cut(s)	258, 312, 354, 389
DpnII	GATC	4 cut(s)	256, 310, 352, 387
EaeI	YGGCCR	2 cut(s)	3, 121
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco105I	TACGTA	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	568, 741
EcoT14I	CCWWGG	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	5 cut(s)	307, 361, 640, 710, 782
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	2 cut(s)	599, 612
FatI	CATG	5 cut(s)	303, 357, 636, 706, 778
FauI	CCCGC	2 cut(s)	137, 490
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	5 cut(s)	35, 91, 135, 341, 735
Fsp4HI	GCNGC	5 cut(s)	35, 91, 135, 341, 735
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	5 cut(s)	35, 91, 135, 341, 735
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	3 cut(s)	5, 123, 610
HapII	CCGG	2 cut(s)	66, 611
HgaI	GACGC	2 cut(s)	40, 82
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	307, 361, 640, 710, 782
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	2 cut(s)	66, 611
HphI	GGTGA	2 cut(s)	88, 512
Hpy166II	GTNNAC	4 cut(s)	19, 142, 503, 844
Hpy188I	TCNGA	2 cut(s)	161, 352
Hpy188III	TCNNGA	5 cut(s)	287, 471, 522, 707, 836
Hpy8I	GTNNAC	4 cut(s)	19, 142, 503, 844
HpyAV	CCTTC	2 cut(s)	34, 600
HpyCH4III	ACNGT	2 cut(s)	677, 776
HpyCH4IV	ACGT	5 cut(s)	60, 84, 195, 411, 656
HpyCH4V	TGCA	5 cut(s)	539, 563, 630, 737, 769
HpyF10VI	GCNNNNNNNGC	7 cut(s)	120, 129, 134, 545, 574, 616, 641
HpySE526I	ACGT	5 cut(s)	60, 84, 195, 411, 656
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	307, 361, 640, 710, 782
HspAI	GCGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	256, 310, 352, 387
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	9 cut(s)	79, 161, 456, 549, 555, 582, 624, 728, 755
Lsp1109I	GCAGC	2 cut(s)	46, 721
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	5 cut(s)	60, 84, 195, 411, 656
MaeIII	GTNAC	3 cut(s)	94, 187, 781
MalI	GATC	4 cut(s)	258, 312, 354, 389
MboI	GATC	4 cut(s)	256, 310, 352, 387
MboII	GAAGA	3 cut(s)	40, 148, 266
MflI	RGATCY	2 cut(s)	256, 310
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	5 cut(s)	8, 228, 446, 454, 831
MmeI	TCCRAC	2 cut(s)	353, 462
MnlI	CCTC	7 cut(s)	37, 64, 164, 192, 332, 739, 832
MseI	TTAA	3 cut(s)	167, 263, 269
MslI	CAYNNNNRTG	2 cut(s)	194, 678
MspI	CCGG	2 cut(s)	66, 611
MspR9I	CCNGG	4 cut(s)	66, 570, 612, 743
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	2 cut(s)	570, 743
MvnI	CGCG	2 cut(s)	132, 343
MwoI	GCNNNNNNNGC	7 cut(s)	120, 129, 134, 545, 574, 616, 641
NciI	CCSGG	2 cut(s)	66, 612
NdeII	GATC	4 cut(s)	256, 310, 352, 387
NlaIII	CATG	5 cut(s)	307, 361, 640, 710, 782
NmuCI	GTSAC	2 cut(s)	94, 187
OliI	CACNNNNGTG	2 cut(s)	194, 678
PagI	TCATGA	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 90
PctI	GAATGC	1 cut(s)	632
PfeI	GAWTC	1 cut(s)	518
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	36, 92, 136, 342, 736
Ppu21I	YACGTR	2 cut(s)	196, 412
PsiI	TTATAA	1 cut(s)	183
Psp1406I	AACGTT	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	568, 741
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	2 cut(s)	568, 741
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	2 cut(s)	256, 310
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	2 cut(s)	194, 678
SaqAI	TTAA	3 cut(s)	167, 263, 269
SatI	GCNGC	5 cut(s)	35, 91, 135, 341, 735
Sau3AI	GATC	4 cut(s)	256, 310, 352, 387
ScrFI	CCNGG	4 cut(s)	66, 570, 612, 743
SduI	GDGCHC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	2 cut(s)	194, 678
SnaBI	TACGTA	1 cut(s)	412
Sse9I	AATT	5 cut(s)	8, 228, 446, 454, 831
SsiI	CCGC	6 cut(s)	90, 99, 130, 135, 341, 497
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	4 cut(s)	64, 568, 610, 741
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	2 cut(s)	677, 776
TaiI	ACGT	5 cut(s)	63, 87, 198, 414, 659
TaqI	TCGA	1 cut(s)	26
TasI	AATT	5 cut(s)	8, 228, 446, 454, 831
TauI	GCSGC	3 cut(s)	93, 137, 343
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	3 cut(s)	167, 263, 269
Tru9I	TTAA	3 cut(s)	167, 263, 269
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	2 cut(s)	94, 187
TseI	GCWGC	2 cut(s)	34, 734
Tsp45I	GTSAC	2 cut(s)	94, 187
TspDTI	ATGAA	2 cut(s)	221, 723
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	637
Van91I	CCANNNNNTGG	1 cut(s)	458
XapI	RAATTY	2 cut(s)	8, 446
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.