Rmu_sc0000633.1_g000010

cysteine--tRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000633.1
OG0001861
Physical Location & Seq
Forward (+)
26323 .. 26777
455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000633.1_g000010.1.cds

Sequence Viewer

Length: 285 bp
atgggcactggaagacctggttggcatatcgagtgcagtgccatgagtactgcttatctgggttactcttttgacatacatggtgaagggatggaccttttgtttcccccacatgagaatgaaattgctcagagttgtgctgcttgtataacccctctgtggaagcacgggcttcaacaacgcattagtctctccttccctttcgcgcgcttcaacctcgtctctccttctctttcgcgcttcagcctcgtctctccactctcgatcgcgcatcatcctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000741 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006417 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009559 GO:0009561 GO:0009570 GO:0009889 GO:0009987 GO:0010197 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0010941 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019222 GO:0019538 GO:0019752 GO:0030154 GO:0030554 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034248 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042407 GO:0043038 GO:0043039 GO:0043043 GO:0043067 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061024 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
DALR_2 tRNA-synt_1e tRNA-synt_1g

Protein Analysis

94

Amino Acids

10.37

Weight (kDa)

6.56

Isoelectric Point (pI)

76.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 206, 208, 238, 269
AcuI CTGAAG 1 cut(s) 226
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 2 cut(s) 176, 214
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 1 cut(s) 36
Alw26I GTCTC 3 cut(s) 194, 226, 256
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 4 cut(s) 208, 210, 240, 271
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 3 cut(s) 194, 226, 256
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 96, 274
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 13
BsePI GCGCGC 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 4 cut(s) 206, 208, 238, 269
Bsh1285I CGRYCG 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 194, 226, 256
BsmBI CGTCTC 2 cut(s) 226, 256
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 4 cut(s) 206, 208, 238, 269
BsrI ACTGG 1 cut(s) 13
BssHII GCGCGC 1 cut(s) 206
BssMI GATC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 96, 274
BstFNI CGCG 4 cut(s) 206, 208, 238, 269
BstHHI GCGC 4 cut(s) 208, 210, 240, 271
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 3 cut(s) 194, 226, 256
BstMBI GATC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 267
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 4 cut(s) 206, 208, 238, 269
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 19
BtsCI GGATG 2 cut(s) 96, 274
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 6, 43
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 4 cut(s) 208, 210, 240, 271
Cfr13I GGNCC 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 16
Csp6I GTAC 1 cut(s) 48
CviAII CATG 3 cut(s) 43, 80, 113
CviJI RGCY 2 cut(s) 172, 246
CviKI_1 RGCY 2 cut(s) 172, 246
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 16
Esp3I CGTCTC 2 cut(s) 226, 256
FaeI CATG 3 cut(s) 46, 83, 116
FaiI YATR 6 cut(s) 27, 44, 77, 81, 114, 149
FatI CATG 3 cut(s) 42, 79, 112
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 2 cut(s) 103, 261
Fsp4HI GCNGC 1 cut(s) 141
GlaI GCGC 4 cut(s) 207, 209, 239, 270
GluI GCNGC 1 cut(s) 141
HhaI GCGC 4 cut(s) 208, 210, 240, 271
Hin1II CATG 3 cut(s) 46, 83, 116
Hin6I GCGC 4 cut(s) 206, 208, 238, 269
HinP1I GCGC 4 cut(s) 206, 208, 238, 269
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 262
HpyAV CCTTC 3 cut(s) 80, 205, 237
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 3 cut(s) 46, 83, 116
HspAI GCGC 4 cut(s) 206, 208, 238, 269
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 3 cut(s) 3, 30, 44
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 280
MabI ACCWGGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 62
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 123
MnlI CCTC 3 cut(s) 165, 227, 257
MslI CAYNNNNRTG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MvnI CGCG 4 cut(s) 206, 208, 238, 269
NdeII GATC 1 cut(s) 264
NlaIII CATG 3 cut(s) 46, 83, 116
PauI GCGCGC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 142
Ple19I CGATCG 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspPI GGNCC 1 cut(s) 94
PteI GCGCGC 1 cut(s) 206
PvuI CGATCG 1 cut(s) 267
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 117
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 19, 99, 219
SexAI ACCWGGT 1 cut(s) 16
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 16
TaqI TCGA 2 cut(s) 30, 263
TasI AATT 1 cut(s) 123
TatI WGTACW 1 cut(s) 47
TscAI CASTG 2 cut(s) 13, 43
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 2 cut(s) 13, 43
VpaK11BI GGWCC 1 cut(s) 94
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.